IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1392	 38.47	0	1466184..1467020	-	278	116618566	-	LEUM_1472	-	hypothetical protein
1393	 39.55	0	1467101..1467631	-	176	116618567	-	LEUM_1473	-	adenine phosphoribosyltransferase
1394	 38.41	0	1467666..1469633	-	655	116618568	-	LEUM_1474	-	single-stranded DNA-specific exonuclease
1395	 39.60	0	1469620..1470576	-	318	116618569	-	LEUM_1475	-	beta-lactamase superfamily hydrolase
1396	 39.73	0	1470702..1471217	-	171	116618570	-	LEUM_1476	-	peptide methionine sulfoxide reductase
1397	 36.59	0	1471278..1472291	-	337	116618571	-	LEUM_1477	-	ketopantoate reductase
1398	 43.03	+1	1472341..1473072	-	243	116618572	-	LEUM_1478	-	tRNA (Guanine37-N1) methyltransferase
1399	 35.06	0	1473072..1473593	-	173	116618573	-	LEUM_1479	-	16S rRNA processing protein RimM
1400	 35.40	0	1473669..1474151	-	160	116618574	-	LEUM_1480	-	methylated DNA-protein cysteine methyltransferase
1401	 38.21	0	1474202..1477894	-	1230	116618575	-	LEUM_1481	-	DNA helicase/exodeoxyribonuclease V, subunit A
1402	 38.56	0	1477894..1481373	-	1159	116618576	-	LEUM_1482	-	ATP-dependent nuclease, subunit B
1403	 37.88	0	1481373..1482164	-	263	116618577	-	LEUM_1483	-	esterase
1404	 35.63	0	1482252..1484033	-	593	116618578	-	LEUM_1484	-	hypothetical protein
1405	 41.19	0	1484134..1484553	-	139	116618579	-	LEUM_1485	-	SSU ribosomal protein S16P
1406	 34.83	0	1484692..1484892	-	66	116618580	-	LEUM_1486	-	hypothetical protein
1407	 39.74	0	1485039..1487831	-	930	116618581	-	LEUM_1487	-	isoleucyl-tRNA synthetase
1408	 40.27	0	1488141..1488803	-	220	116618582	-	LEUM_1488	-	cell division initiation protein
1409	 34.96	0	1488864..1489661	-	265	116618583	-	LEUM_1489	-	cell division protein
1410	 34.47	-1	1489658..1489921	-	87	116618584	-	LEUM_1490	-	cell division membrane protein
1411	 40.44	0	1489927..1490376	-	149	116618585	-	LEUM_1491	-	cell division protein
1412	 41.97	+1	1490386..1491693	-	435	116618586	-	LEUM_1492	-	cell division protein FtsZ
1413	 39.86	0	1491717..1493048	-	443	116618587	-	LEUM_1493	-	cell division protein FtsA
1414	 34.18	-1	1493140..1493844	-	234	116618588	-	LEUM_1494	-	cell division protein FtsQ
1415	 40.48	0	1493844..1494935	-	363	116618589	-	LEUM_1495	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
1416	 38.22	0	1494946..1496295	-	449	116618590	-	LEUM_1496	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
1417	 38.32	0	1496339..1497301	-	320	116618591	-	LEUM_1497	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1418	 38.27	0	1497311..1499437	-	708	116618592	-	LEUM_1498	-	cell division protein FtsI/penicillin-binding protein 2
1419	 38.21	0	1499452..1499820	-	122	116618593	-	LEUM_1499	-	cell division protein FtsL
1420	 40.26	0	1499879..1500817	-	312	116618594	-	LEUM_1500	-	SAM-dependent methyltransferase for cell envelope biogenesis
1421	 38.43	0	1500856..1501287	-	143	116618595	-	LEUM_1501	-	hypothetical protein
1422	 35.09	0	1501439..1501780	-	113	116618596	-	LEUM_1502	-	hypothetical protein
1423	 38.16	0	1501881..1502087	+	68	116618597	-	LEUM_1503	-	hypothetical protein
1424	 39.95	0	1502135..1503841	-	568	116618598	-	LEUM_1504	-	dihydroxyacetone kinase-like protein
1425	 36.53	0	1503850..1504224	-	124	116618599	-	LEUM_1505	-	hypothetical protein
1426	 43.78	+1	1504418..1504618	-	66	116618600	-	LEUM_1506	-	50S ribosomal protein L28P
1427	 38.41	0	1504709..1505023	-	104	116618601	-	LEUM_1507	-	Thiol-disulfide isomerase and thioredoxin
1428	 35.30	0	1505013..1505672	-	219	116618602	-	LEUM_1508	-	thiamine pyrophosphokinase
1429	 40.33	0	1505672..1506328	-	218	116618603	-	LEUM_1509	-	ribulose-5-phosphate 3-epimerase
1430	 38.51	0	1506342..1507229	-	295	116618604	-	LEUM_1510	-	GTPase
1431	 38.89	0	1507281..1509206	-	641	116618605	-	LEUM_1511	-	serine/threonine kinase protein
1432	 39.59	0	1509209..1509943	-	244	116618606	-	LEUM_1512	-	Serine/threonine protein phosphatase
1433	 38.08	0	1509943..1511289	-	448	116618607	-	LEUM_1513	-	tRNA and rRNA cytosine-C5-methylase
1434	 40.37	0	1511279..1512244	-	321	116618608	-	LEUM_1514	-	methionyl-tRNA formyltransferase
1435	 41.75	+1	1512352..1514763	-	803	116618609	-	LEUM_1515	-	replication restart DNA helicase PriA
1436	 37.30	0	1514760..1515314	-	184	116618610	-	LEUM_1516	-	acetyltransferase
1437	 37.53	0	1515356..1516498	-	380	116618611	-	LEUM_1517	-	NMN adenylytransferase and ribosylnicotinamide kinase, NadR ortholog
1438	 40.89	0	1516544..1517311	-	255	116618612	-	LEUM_1518	-	nicotinamide mononucleotide transporter
1439	 40.09	0	1517414..1517857	-	147	116618613	-	LEUM_1519	-	peptide methionine sulfoxide reductase domain-containing protein
1440	 36.07	0	1517961..1518545	-	194	116618614	-	LEUM_1520	-	GTPase EngB
1441	 39.65	0	1518546..1519796	-	416	116618615	clpX	LEUM_1521	-	ATP-dependent protease ATP-binding subunit
1442	 41.67	+1	1519937..1521232	-	431	116618616	-	LEUM_1522	-	FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)
1443	 38.64	0	1521398..1522132	-	244	116618617	-	LEUM_1523	-	metal-dependent hydrolase
1444	 34.29	-1	1522341..1522445	-	34	116618618	-	LEUM_1524	-	hypothetical protein
1445	 41.60	+1	1522543..1523958	-	471	116618619	-	LEUM_1525	-	peptidase V
1446	 35.24	0	1524086..1525291	-	401	116618620	-	LEUM_1526	-	hypothetical protein
1447	 41.24	+1	1525408..1526229	+	273	116618621	-	LEUM_1527	-	sugar kinase
1448	 40.90	0	1526287..1527105	+	272	116618622	-	LEUM_1528	-	exonuclease III
1449	 36.33	0	1527141..1527674	-	177	116618623	-	LEUM_1529	-	DNA polymerase III, epsilon subunit related 3'-5' exonuclease
1450	 38.85	0	1527677..1528165	-	162	116618624	-	LEUM_1530	-	acetyltransferase
1451	 38.00	0	1528162..1528611	-	149	116618625	-	LEUM_1531	-	ATPase or kinase
1452	 32.03	-1	1528681..1529835	-	384	116618626	-	LEUM_1532	-	sortase (surface protein transpeptidase)
1453	 32.66	-1	1529828..1531015	-	395	116618627	-	LEUM_1533	-	sortase (surface protein transpeptidase)
1454	 38.18	0	1531154..1532680	-	508	116618628	-	LEUM_1534	-	hypothetical protein
1455	 32.80	-1	1532670..1533794	-	374	116618629	-	LEUM_1535	-	hypothetical protein
1456	 37.21	0	1533791..1536553	-	920	116618630	-	LEUM_1536	-	von Willebrand factor domain-containing protein
1457	 31.90	-1	1537020..1538132	+	370	116618631	-	LEUM_1537	-	AraC family transcriptional regulator
1458	 41.07	0	1538212..1538793	-	193	116618632	-	LEUM_1538	-	ribonucleoside-triphosphate reductase class III activase subunit
1459	 39.57	0	1538729..1540939	-	736	116618633	-	LEUM_1539	-	anaerobic ribonucleoside triphosphate reductase
1460	 36.45	0	1541234..1542676	+	480	116618634	-	LEUM_1540	-	nicotinate phosphoribosyltransferase
1461	 43.43	+1	1542673..1543494	+	273	116618635	nadE	LEUM_1541	-	NAD synthetase
1462	 35.81	0	1543589..1544113	-	174	116618636	-	LEUM_1542	-	hypothetical protein
1463	 35.43	0	1544130..1544798	-	222	116618637	-	LEUM_1543	-	ABC-type cobalt transport system, permease component CbiQ related transporter
1464	 34.76	0	1544795..1546198	-	467	116618638	-	LEUM_1544	-	ABC-type cobalt transport system, ATPase component
1465	 39.93	0	1546212..1546802	-	196	116618639	-	LEUM_1545	-	ABC-type cobalt transport system, membrane component
1466	 38.72	0	1547324..1548028	+	234	116618640	-	LEUM_1546	-	putative transcription activator
1467	 39.01	0	1548116..1549189	-	357	116618641	-	LEUM_1547	-	histidinol phosphate aminotransferase
1468	 32.46	-1	1549173..1549517	-	114	116618642	-	LEUM_1548	-	phosphoribosyl-ATP pyrophosphatase
1469	 39.10	0	1549541..1549939	-	132	116618643	-	LEUM_1549	-	phosphoribosyl-AMP cyclohydrolase
1470	 42.75	+1	1549936..1550700	-	254	116618644	-	LEUM_1550	-	imidazole glycerol phosphate synthase subunit hisF
1471	 37.94	0	1550697..1551413	-	238	116618645	-	LEUM_1551	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1472	 38.51	0	1551410..1552027	-	205	116618646	-	LEUM_1552	-	imidazole glycerol phosphate synthase subunit hisH
1473	 40.48	0	1552079..1552666	-	195	116618647	-	LEUM_1553	-	imidazoleglycerol-phosphate dehydratase
1474	 39.98	0	1552668..1553945	-	425	116618648	-	LEUM_1554	-	histidinol dehydrogenase
1475	 40.11	0	1553942..1555549	-	535	116618649	-	LEUM_1555	-	ATP phosphoribosyltransferase regulatory subunit / ATP phosphoribosyltransferase catalytic subunit
1476	 30.44	-2	1555928..1557034	-	368	116618650	-	LEUM_1556	-	Signal transduction diguanylate cyclase
1477	 31.28	-1	1557028..1557756	-	242	116618651	-	LEUM_1557	-	C-di-GMP-specific phosphodiesterase
1478	 33.57	-1	1557848..1558690	-	280	116618652	-	LEUM_1558	-	histidinol-phosphatase
1479	 35.32	0	1558740..1559546	-	268	116618653	-	LEUM_1559	-	HAD superfamily hydrolase
1480	 33.89	-1	1559615..1559794	-	59	116618654	-	LEUM_1560	-	hypothetical protein
1481	 40.85	0	1559794..1561269	-	491	116618655	-	LEUM_1561	-	signal recognition particle subunit FFH/SRP54 (srp54)
1482	 33.91	-1	1561312..1561656	-	114	116618656	-	LEUM_1562	-	hypothetical protein
1483	 38.83	0	1561653..1562981	-	442	116618657	-	LEUM_1563	-	signal recognition particle-docking protein FtsY
1484	 37.77	0	1563051..1566608	-	1185	116618658	-	LEUM_1564	-	condensin subunit Smc
1485	 38.40	0	1566605..1567315	-	236	116618659	-	LEUM_1565	-	dsRNA-specific ribonuclease
1486	 39.40	0	1567427..1568794	-	455	116618660	-	LEUM_1566	-	phosphoglucosamine mutase
1487	 39.80	0	1568798..1569895	-	365	116618661	-	LEUM_1567	-	hypothetical protein
1488	 37.83	0	1569892..1570713	-	273	116618662	-	LEUM_1568	-	hypothetical protein
1489	 38.87	0	1570720..1572816	-	698	116618663	-	LEUM_1569	-	NhaP-type Na+/H+ and K+/H+ antiporter
1490	 40.96	0	1572820..1573698	-	292	116618664	-	LEUM_1570	-	UDP-N-acetylmuramate dehydrogenase
1491	 43.00	+1	1573889..1574302	-	137	116618665	-	LEUM_1571	-	nucleoside diphosphate kinase
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.