IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1251	 41.00	0	1317628..1317888	+	86	116618425	-	LEUM_1328	-	small membrane protein
1252	 34.17	-1	1318221..1318340	-	39	116618426	-	LEUM_1329	-	hypothetical protein
1253	 30.05	-2	1318406..1318618	+	70	116618427	-	LEUM_1330	-	hypothetical protein
1254	 27.93	-2	1318720..1318830	-	36	116618428	-	LEUM_1331	-	hypothetical protein
1255	 36.11	0	1318957..1319100	+	47	116618429	-	LEUM_1332	-	hypothetical protein
1256	 36.61	0	1319820..1320338	+	172	116618430	-	LEUM_1334	-	hypothetical protein
1257	 37.27	0	1320517..1321050	+	177	116618431	-	LEUM_1335	-	sortase related acyltransferase
1258	 35.02	0	1321145..1322035	+	296	116618432	-	LEUM_1336	-	permease
1259	 39.03	0	1322231..1322950	+	239	116618433	-	LEUM_1337	-	hypothetical protein
1260	 38.63	0	1323065..1323385	-	106	116618434	-	LEUM_1338	-	membrane transporter
1261	 32.09	-1	1323428..1325116	-	562	116618435	-	LEUM_1339	-	hypothetical protein
1262	 28.17	-2	1325486..1325698	+	70	116618436	-	LEUM_1340	-	hypothetical protein
1263	 40.99	0	1326008..1327849	-	613	116618437	-	LEUM_1342	-	stress response membrane GTPase
1264	 37.77	0	1327911..1328699	-	262	116618438	-	LEUM_1343	-	fructose-1 6-bisphosphatase
1265	 32.97	-1	1328696..1328968	-	90	116618439	-	LEUM_1344	-	hypothetical protein
1266	 40.07	0	1329024..1329602	+	192	116618440	def	LEUM_1345	-	peptide deformylase
1267	 43.22	+1	1329652..1330551	-	299	116618441	-	LEUM_1346	-	DnaJ-like molecular chaperone
1268	 41.07	0	1330615..1332462	-	615	116618442	-	LEUM_1347	-	molecular chaperone
1269	 38.42	0	1332549..1333118	-	189	116618443	-	LEUM_1348	-	molecular chaperone GrpE (heat shock protein)
1270	 40.25	0	1333135..1334160	-	341	116618444	-	LEUM_1349	-	heat-inducible transcription repressor HrcA
1271	 39.85	0	1334282..1335232	-	316	116618445	-	LEUM_1350	-	riboflavin kinase / FMN adenylyltransferase
1272	 37.95	0	1335229..1336137	-	302	116618446	-	LEUM_1351	-	pseudouridine synthase
1273	 40.93	0	1336115..1336654	-	179	116618447	-	LEUM_1352	-	phosphotransferase system IIA component
1274	 39.12	0	1336657..1337832	-	391	116618448	-	LEUM_1353	-	L-aspartate aminotransferase
1275	 39.27	0	1337928..1338281	-	117	116618449	-	LEUM_1354	-	ribosome-binding factor A
1276	 42.75	+1	1338354..1340858	-	834	116618450	-	LEUM_1355	-	translation initiation factor 2
1277	 35.51	0	1340859..1341179	-	106	116618451	-	LEUM_1356	-	50S ribosomal protein L7AE
1278	 39.86	0	1341169..1341444	-	91	116618452	-	LEUM_1357	-	nucleic-acid-binding protein implicated in transcription termination
1279	 41.17	0	1341519..1342616	-	365	116618453	-	LEUM_1358	-	transcription elongation factor
1280	 36.90	0	1342641..1343117	-	158	116618454	-	LEUM_1359	-	hypothetical protein
1281	 46.30	+2	1343411..1343680	-	89	116618455	-	LEUM_1360	-	SSU ribosomal protein S14P
1282	 40.67	0	1343680..1343829	-	49	116618456	-	LEUM_1361	-	50S ribosomal protein L33P
1283	 39.29	0	1343995..1344900	-	301	116618457	-	LEUM_1362	-	inorganic pyrophosphatase/exopolyphosphatase
1284	 38.38	0	1344947..1347385	-	812	116618458	-	LEUM_1363	-	DNA topoisomerase IV subunit A
1285	 41.67	+1	1347528..1349591	-	687	116618459	-	LEUM_1364	-	DNA topoisomerase IV subunit B
1286	 38.05	0	1349769..1350383	+	204	116618460	-	LEUM_1365	-	acyl-phosphate glycerol-3-phosphate acyltransferase
1287	 38.00	0	1350377..1350826	-	149	116618461	-	LEUM_1366	-	D-tyrosyl-tRNA deacylase
1288	 40.07	0	1350987..1353182	-	731	116618462	-	LEUM_1367	-	guanosine polyphosphate pyrophosphohydrolase/synthetase
1289	 39.70	0	1353540..1354748	+	402	116618463	-	LEUM_1368	-	major facilitator superfamily permease
1290	 36.30	0	1354769..1355071	-	100	116618464	-	LEUM_1369	-	hypothetical protein
1291	 39.37	0	1355064..1357565	-	833	116618465	-	LEUM_1370	-	carbamoyl-phosphate synthase large subunit
1292	 41.57	+1	1357546..1358625	-	359	116618466	-	LEUM_1371	-	carbamoyl-phosphate synthase small subunit
1293	 39.20	0	1358751..1359278	-	175	116618467	-	LEUM_1372	-	pyrimidine operon attenuation protein/uracil phosphoribosyltransferase
1294	 39.51	0	1359268..1360206	-	312	116618468	-	LEUM_1373	-	ribosomal large subunit pseudouridine synthase D
1295	 35.38	0	1360196..1360585	-	129	116618469	-	LEUM_1374	-	hypothetical protein
1296	 36.46	0	1360770..1361153	+	127	116618470	-	LEUM_1375	-	RNase HI
1297	 40.91	0	1361174..1361701	-	175	116618471	-	LEUM_1376	-	acetyltransferase
1298	 38.99	0	1361760..1362962	-	400	116618472	-	LEUM_1377	-	aromatic amino acid aminotransferase
1299	 40.12	0	1363115..1364248	-	377	116618473	-	LEUM_1378	-	N6-adenine-specific DNA methylase
1300	 30.08	-2	1364307..1364552	+	81	116618474	-	LEUM_1379	-	hypothetical protein
1301	 41.04	0	1364553..1365188	-	211	116618475	-	LEUM_1380	-	DNA replication protein DnaD
1302	 39.60	0	1365297..1366604	-	435	116618476	-	LEUM_1381	-	asparaginyl-tRNA synthetase
1303	 38.69	0	1366612..1367805	-	397	116618477	-	LEUM_1382	-	aminotransferase
1304	 35.80	0	1367820..1368347	-	175	116618478	-	LEUM_1383	-	hypothetical protein
1305	 35.67	0	1368419..1370812	-	797	116618479	-	LEUM_1384	-	Rad3-related DNA helicase
1306	 40.09	0	1370974..1371906	+	310	116618480	-	LEUM_1385	-	mevalonate kinase
1307	 41.08	0	1371903..1372844	+	313	116618481	-	LEUM_1386	-	diphosphomevalonate decarboxylase
1308	 40.29	0	1372837..1373856	+	339	116618482	-	LEUM_1387	-	phosphomevalonate kinase
1309	 39.79	0	1373858..1374910	+	350	116618483	-	LEUM_1388	-	isopentenyl pyrophosphate isomerase
1310	 38.48	0	1374927..1375490	-	187	116618484	-	LEUM_1389	-	hypoxanthine phosphoribosyltransferase
1311	 42.13	+1	1375487..1376782	-	431	116618485	-	LEUM_1390	-	adenylosuccinate lyase
1312	 40.00	0	1376775..1377539	-	254	116618486	-	LEUM_1391	-	formate/nitrate transporter
1313	 38.61	0	1377715..1378434	-	239	116618487	-	LEUM_1392	-	glycerol uptake facilitator related permease (major Intrinsic protein family)
1314	 37.31	0	1378648..1379100	+	150	116618488	-	LEUM_1393	-	flavodoxin
1315	 32.61	-1	1379112..1379528	-	138	116618489	-	LEUM_1394	-	GtcA family membrane protein
1316	 37.87	0	1379572..1380474	-	300	116618490	-	LEUM_1395	-	glycosyltransferase
1317	 35.40	0	1380485..1381357	-	290	116618491	-	LEUM_1396	-	fucose 4-O-acetylase related acetyltransferase
1318	 36.16	0	1381359..1383266	-	635	116618492	-	LEUM_1397	-	phosphoglycerol transferase/alkaline phosphatase superfamily protein
1319	 33.45	-1	1383361..1385130	-	589	116618493	-	LEUM_1398	-	hypothetical protein
1320	 34.98	0	1385114..1387057	-	647	116618494	-	LEUM_1399	-	hypothetical protein
1321	 36.48	0	1387020..1387973	-	317	116618495	-	LEUM_1400	-	glycosyltransferase-like protein
1322	 37.32	0	1387983..1388936	-	317	116618496	-	LEUM_1401	-	glycosyltransferase-like protein
1323	 37.11	0	1388982..1390172	-	396	116618497	-	LEUM_1402	-	UDP-galactopyranose mutase
1324	 37.09	0	1390172..1390942	-	256	116618498	-	LEUM_1403	-	lipopolysaccharide biosynthesis glycosyltransferase
1325	 36.67	0	1390939..1392315	-	458	116618499	-	LEUM_1404	-	hypothetical protein
1326	 38.76	0	1392325..1392951	-	208	116618500	-	LEUM_1405	-	capsular polysaccharide biosynthesis protein
1327	 35.25	0	1392969..1393595	-	208	116618501	-	LEUM_1406	-	lipopolysaccharide synthesis sugar transferase
1328	 36.51	0	1393661..1395106	-	481	116618502	-	LEUM_1407	-	PST family polysaccharide transporter
1329	 33.93	-1	1395203..1396714	-	503	116618503	-	LEUM_1408	-	sucrose-6-phosphate hydrolase
1330	 40.10	0	1396823..1399852	-	1009	116618504	-	LEUM_1409	-	hypothetical protein
1331	 39.28	0	1400249..1403326	-	1025	116618505	-	LEUM_1410	-	hypothetical protein
1332	 39.22	0	1403464..1406472	-	1002	116618506	-	LEUM_1411	-	hypothetical protein
1333	 34.40	-1	1406628..1407659	-	343	116618507	-	LEUM_1412	-	polysaccharide biosynthesis protein (putative)
1334	 39.65	0	1407720..1409033	-	437	116618508	-	LEUM_1413	-	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
1335	 36.86	0	1409079..1409588	-	169	116618509	-	LEUM_1414	-	lipoprotein
1336	 32.54	-1	1409693..1410700	-	335	116618510	-	LEUM_1415	-	hypothetical protein
1337	 32.00	-1	1410823..1411872	-	349	116618511	-	LEUM_1416	-	cell surface protein
1338	 36.54	0	1411901..1412680	-	259	116618512	-	LEUM_1417	-	cell surface protein
1339	 38.35	0	1412673..1413071	-	132	116618513	-	LEUM_1418	-	hypothetical protein
1340	 35.29	0	1413080..1414612	-	510	116618514	-	LEUM_1419	-	hypothetical protein
1341	 46.43	+2	1414997..1415836	-	279	116618515	-	LEUM_1420	-	dTDP-4-dehydrorhamnose reductase
1342	 42.00	+1	1415885..1416922	-	345	116618516	-	LEUM_1421	-	dTDP-glucose 4,6-dehydratase
1343	 40.91	0	1416936..1417529	-	197	116618517	-	LEUM_1422	-	dTDP-4-dehydrorhamnose 3,5-epimerase related enzyme
1344	 40.18	0	1417539..1418414	-	291	116618518	-	LEUM_1423	-	glucose-1-phosphate thymidylyltransferase
1345	 37.82	0	1418467..1419624	-	385	116618519	-	LEUM_1424	-	glycosyltransferase-like protein
1346	 27.80	-2	1420556..1421965	-	469	116618520	-	LEUM_1425	-	polysaccharide transporter
1347	 29.69	-2	1421958..1423001	-	347	116618521	-	LEUM_1426	-	exopolysaccharide biosynthesis protein
1348	 29.29	-2	1423023..1424111	-	362	116618522	-	LEUM_1427	-	hypothetical protein
1349	 30.25	-2	1424140..1425111	-	323	116618523	-	LEUM_1428	-	glycosyltransferase-like protein
1350	 31.50	-1	1425108..1426034	-	308	116618524	-	LEUM_1429	-	lipopolysaccharide biosynthesis glycosyltransferase
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.