IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1219	 39.61	0	1283357..1283914	-	185	116618393	-	LEUM_1294	-	LysM domain-containing protein
1220	 36.04	0	1283988..1284578	-	196	116618394	-	LEUM_1295	-	hypothetical protein
1221	 42.67	+1	1284842..1285591	-	249	116618395	-	LEUM_1296	-	ribosomal large subunit pseudouridine synthase B
1222	 37.00	0	1285584..1286183	-	199	116618396	-	LEUM_1297	-	condensin subunit ScpB
1223	 37.32	0	1286176..1286853	-	225	116618397	-	LEUM_1298	-	condensin subunit ScpA
1224	 35.47	0	1286919..1287293	-	124	116618398	-	LEUM_1299	-	riboflavin biosynthesis acetyltransferase RibT
1225	 37.02	0	1287299..1288192	-	297	116618399	-	LEUM_1300	-	tyrosine recombinase XerD subunit
1226	 38.89	0	1288192..1289055	-	287	116618400	-	LEUM_1301	-	RNA-binding protein
1227	 37.81	0	1289144..1289590	-	148	116618401	-	LEUM_1302	-	GatB/YqeY domain-containing protein
1228	 43.55	+1	1289673..1289858	-	61	116618402	-	LEUM_1303	-	SSU ribosomal protein S21P
1229	 38.34	0	1289995..1290993	-	332	116618403	-	LEUM_1304	-	major facilitator superfamily permease
1230	 36.76	0	1291404..1292951	+	515	116618404	-	LEUM_1306	-	CdaR family transcriptional regulator
1231	 38.73	0	1293053..1294459	+	468	116618405	-	LEUM_1307	-	gamma-aminobutyrate permease related permease
1232	 42.10	+1	1294516..1295382	-	288	116618406	-	LEUM_1308	-	hypothetical protein
1233	 41.05	0	1295484..1297259	-	591	116618407	-	LEUM_1309	-	aspartyl-tRNA synthetase
1234	 39.78	0	1297256..1298557	-	433	116618408	-	LEUM_1310	-	histidyl-tRNA synthetase
1235	 39.26	0	1298966..1299961	-	331	116618409	-	LEUM_1311	-	aldose 1-epimerase
1236	 35.91	0	1300135..1301064	+	309	116618410	-	LEUM_1312	-	AraC family transcriptional regulator
1237	 38.53	0	1301061..1302233	-	390	116618411	-	LEUM_1313	-	galactokinase
1238	 38.22	0	1302262..1303674	-	470	116618412	-	LEUM_1314	-	Na+/xyloside symporter related transporter
1239	 37.60	0	1303869..1304876	-	335	116618413	-	LEUM_1315	-	aryl-alcohol dehydrogenase
1240	 38.25	0	1304869..1307979	-	1036	116618414	lacZ	LEUM_1316	-	beta-D-galactosidase
1241	 40.34	0	1308203..1309558	+	451	116618415	-	LEUM_1317	-	hypothetical protein
1242	 39.05	0	1309618..1310562	-	314	116618416	-	LEUM_1318	-	phosphoglycerate dehydrogenase-like protein
1243	 44.16	+1	1310781..1311824	+	347	116618417	-	LEUM_1319	-	branched-chain amino acid aminotransferase
1244	 34.14	-1	1312097..1312594	-	165	116618418	-	LEUM_1321	-	hypothetical protein
1245	 38.39	0	1312594..1313937	-	447	116618419	-	LEUM_1322	-	5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase
1246	 37.36	0	1314022..1314468	-	148	116618420	-	LEUM_1323	-	hypothetical protein
1247	 38.72	0	1314470..1315564	-	364	116618421	-	LEUM_1324	-	aminopeptidase P
1248	 44.65	+2	1315681..1315998	-	105	116618422	rpmA	LEUM_1325	-	50S ribosomal protein L27
1249	 41.33	+1	1316026..1316325	-	99	116618423	-	LEUM_1326	-	50S ribosomal protein L21P
1250	 38.14	0	1316510..1317091	-	193	116618424	-	LEUM_1327	-	transcriptional regulator
1251	 41.00	0	1317628..1317888	+	86	116618425	-	LEUM_1328	-	small membrane protein
1252	 34.17	-1	1318221..1318340	-	39	116618426	-	LEUM_1329	-	hypothetical protein
1253	 30.05	-2	1318406..1318618	+	70	116618427	-	LEUM_1330	-	hypothetical protein
1254	 27.93	-2	1318720..1318830	-	36	116618428	-	LEUM_1331	-	hypothetical protein
1255	 36.11	0	1318957..1319100	+	47	116618429	-	LEUM_1332	-	hypothetical protein
1256	 36.61	0	1319820..1320338	+	172	116618430	-	LEUM_1334	-	hypothetical protein
1257	 37.27	0	1320517..1321050	+	177	116618431	-	LEUM_1335	-	sortase related acyltransferase
1258	 35.02	0	1321145..1322035	+	296	116618432	-	LEUM_1336	-	permease
1259	 39.03	0	1322231..1322950	+	239	116618433	-	LEUM_1337	-	hypothetical protein
1260	 38.63	0	1323065..1323385	-	106	116618434	-	LEUM_1338	-	membrane transporter
1261	 32.09	-1	1323428..1325116	-	562	116618435	-	LEUM_1339	-	hypothetical protein
1262	 28.17	-2	1325486..1325698	+	70	116618436	-	LEUM_1340	-	hypothetical protein
1263	 40.99	0	1326008..1327849	-	613	116618437	-	LEUM_1342	-	stress response membrane GTPase
1264	 37.77	0	1327911..1328699	-	262	116618438	-	LEUM_1343	-	fructose-1 6-bisphosphatase
1265	 32.97	-1	1328696..1328968	-	90	116618439	-	LEUM_1344	-	hypothetical protein
1266	 40.07	0	1329024..1329602	+	192	116618440	def	LEUM_1345	-	peptide deformylase
1267	 43.22	+1	1329652..1330551	-	299	116618441	-	LEUM_1346	-	DnaJ-like molecular chaperone
1268	 41.07	0	1330615..1332462	-	615	116618442	-	LEUM_1347	-	molecular chaperone
1269	 38.42	0	1332549..1333118	-	189	116618443	-	LEUM_1348	-	molecular chaperone GrpE (heat shock protein)
1270	 40.25	0	1333135..1334160	-	341	116618444	-	LEUM_1349	-	heat-inducible transcription repressor HrcA
1271	 39.85	0	1334282..1335232	-	316	116618445	-	LEUM_1350	-	riboflavin kinase / FMN adenylyltransferase
1272	 37.95	0	1335229..1336137	-	302	116618446	-	LEUM_1351	-	pseudouridine synthase
1273	 40.93	0	1336115..1336654	-	179	116618447	-	LEUM_1352	-	phosphotransferase system IIA component
1274	 39.12	0	1336657..1337832	-	391	116618448	-	LEUM_1353	-	L-aspartate aminotransferase
1275	 39.27	0	1337928..1338281	-	117	116618449	-	LEUM_1354	-	ribosome-binding factor A
1276	 42.75	+1	1338354..1340858	-	834	116618450	-	LEUM_1355	-	translation initiation factor 2
1277	 35.51	0	1340859..1341179	-	106	116618451	-	LEUM_1356	-	50S ribosomal protein L7AE
1278	 39.86	0	1341169..1341444	-	91	116618452	-	LEUM_1357	-	nucleic-acid-binding protein implicated in transcription termination
1279	 41.17	0	1341519..1342616	-	365	116618453	-	LEUM_1358	-	transcription elongation factor
1280	 36.90	0	1342641..1343117	-	158	116618454	-	LEUM_1359	-	hypothetical protein
1281	 46.30	+2	1343411..1343680	-	89	116618455	-	LEUM_1360	-	SSU ribosomal protein S14P
1282	 40.67	0	1343680..1343829	-	49	116618456	-	LEUM_1361	-	50S ribosomal protein L33P
1283	 39.29	0	1343995..1344900	-	301	116618457	-	LEUM_1362	-	inorganic pyrophosphatase/exopolyphosphatase
1284	 38.38	0	1344947..1347385	-	812	116618458	-	LEUM_1363	-	DNA topoisomerase IV subunit A
1285	 41.67	+1	1347528..1349591	-	687	116618459	-	LEUM_1364	-	DNA topoisomerase IV subunit B
1286	 38.05	0	1349769..1350383	+	204	116618460	-	LEUM_1365	-	acyl-phosphate glycerol-3-phosphate acyltransferase
1287	 38.00	0	1350377..1350826	-	149	116618461	-	LEUM_1366	-	D-tyrosyl-tRNA deacylase
1288	 40.07	0	1350987..1353182	-	731	116618462	-	LEUM_1367	-	guanosine polyphosphate pyrophosphohydrolase/synthetase
1289	 39.70	0	1353540..1354748	+	402	116618463	-	LEUM_1368	-	major facilitator superfamily permease
1290	 36.30	0	1354769..1355071	-	100	116618464	-	LEUM_1369	-	hypothetical protein
1291	 39.37	0	1355064..1357565	-	833	116618465	-	LEUM_1370	-	carbamoyl-phosphate synthase large subunit
1292	 41.57	+1	1357546..1358625	-	359	116618466	-	LEUM_1371	-	carbamoyl-phosphate synthase small subunit
1293	 39.20	0	1358751..1359278	-	175	116618467	-	LEUM_1372	-	pyrimidine operon attenuation protein/uracil phosphoribosyltransferase
1294	 39.51	0	1359268..1360206	-	312	116618468	-	LEUM_1373	-	ribosomal large subunit pseudouridine synthase D
1295	 35.38	0	1360196..1360585	-	129	116618469	-	LEUM_1374	-	hypothetical protein
1296	 36.46	0	1360770..1361153	+	127	116618470	-	LEUM_1375	-	RNase HI
1297	 40.91	0	1361174..1361701	-	175	116618471	-	LEUM_1376	-	acetyltransferase
1298	 38.99	0	1361760..1362962	-	400	116618472	-	LEUM_1377	-	aromatic amino acid aminotransferase
1299	 40.12	0	1363115..1364248	-	377	116618473	-	LEUM_1378	-	N6-adenine-specific DNA methylase
1300	 30.08	-2	1364307..1364552	+	81	116618474	-	LEUM_1379	-	hypothetical protein
1301	 41.04	0	1364553..1365188	-	211	116618475	-	LEUM_1380	-	DNA replication protein DnaD
1302	 39.60	0	1365297..1366604	-	435	116618476	-	LEUM_1381	-	asparaginyl-tRNA synthetase
1303	 38.69	0	1366612..1367805	-	397	116618477	-	LEUM_1382	-	aminotransferase
1304	 35.80	0	1367820..1368347	-	175	116618478	-	LEUM_1383	-	hypothetical protein
1305	 35.67	0	1368419..1370812	-	797	116618479	-	LEUM_1384	-	Rad3-related DNA helicase
1306	 40.09	0	1370974..1371906	+	310	116618480	-	LEUM_1385	-	mevalonate kinase
1307	 41.08	0	1371903..1372844	+	313	116618481	-	LEUM_1386	-	diphosphomevalonate decarboxylase
1308	 40.29	0	1372837..1373856	+	339	116618482	-	LEUM_1387	-	phosphomevalonate kinase
1309	 39.79	0	1373858..1374910	+	350	116618483	-	LEUM_1388	-	isopentenyl pyrophosphate isomerase
1310	 38.48	0	1374927..1375490	-	187	116618484	-	LEUM_1389	-	hypoxanthine phosphoribosyltransferase
1311	 42.13	+1	1375487..1376782	-	431	116618485	-	LEUM_1390	-	adenylosuccinate lyase
1312	 40.00	0	1376775..1377539	-	254	116618486	-	LEUM_1391	-	formate/nitrate transporter
1313	 38.61	0	1377715..1378434	-	239	116618487	-	LEUM_1392	-	glycerol uptake facilitator related permease (major Intrinsic protein family)
1314	 37.31	0	1378648..1379100	+	150	116618488	-	LEUM_1393	-	flavodoxin
1315	 32.61	-1	1379112..1379528	-	138	116618489	-	LEUM_1394	-	GtcA family membrane protein
1316	 37.87	0	1379572..1380474	-	300	116618490	-	LEUM_1395	-	glycosyltransferase
1317	 35.40	0	1380485..1381357	-	290	116618491	-	LEUM_1396	-	fucose 4-O-acetylase related acetyltransferase
1318	 36.16	0	1381359..1383266	-	635	116618492	-	LEUM_1397	-	phosphoglycerol transferase/alkaline phosphatase superfamily protein
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.