IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1142	 38.89	0	1214525..1214794	-	89	116618316	-	LEUM_1216	-	hypothetical protein
1143	 39.64	0	1214849..1216054	-	401	116618317	-	LEUM_1217	-	phosphopantothenoylcysteine decarboxylase / phosphopantothenate-cysteine ligase
1144	 36.75	0	1216125..1216622	-	165	116618318	-	LEUM_1218	-	hypothetical protein
1145	 40.20	0	1216619..1217434	-	271	116618319	-	LEUM_1219	-	membrane protease family stomatin/prohibitin-like protein
1146	 37.36	0	1217446..1217793	-	115	116618320	-	LEUM_1220	-	hypothetical protein
1147	 39.71	0	1217898..1218101	-	67	116618321	-	LEUM_1221	-	hypothetical protein
1148	 33.33	-1	1219144..1219662	-	172	116618322	-	LEUM_1222	-	hypothetical protein
1149	 42.59	+1	1219650..1219703	-	17	116618323	-	LEUM_1223	-	hypothetical protein
1150	 33.33	-1	1220231..1220449	+	72	116618324	-	LEUM_1224	-	hypothetical protein
1151	 39.85	0	1220775..1221434	-	219	116618325	-	LEUM_1225	-	S-adenosylmethionine-dependent methyltransferase
1152	 37.61	0	1221447..1222733	-	428	116618326	-	LEUM_1226	-	ABC transporter permease
1153	 37.11	0	1222723..1223463	-	246	116618327	-	LEUM_1227	-	ABC-type multidrug transport system, ATPase component
1154	 38.06	0	1223626..1224048	+	140	116618328	-	LEUM_1228	-	diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
1155	 29.22	-2	1224083..1224325	+	80	116618329	-	LEUM_1229	-	hypothetical protein
1156	 37.53	0	1224381..1225310	+	309	116618330	-	LEUM_1230	-	parvulin-like peptidyl-prolyl isomerase
1157	 37.48	0	1225390..1226595	-	401	116618331	-	LEUM_1231	-	major facilitator superfamily permease
1158	 37.33	0	1226607..1227806	-	399	116618332	-	LEUM_1232	-	aminotransferase
1159	 37.81	0	1227819..1228757	-	312	116618333	-	LEUM_1233	-	lactate dehydrogenase related dehydrogenase
1160	 39.28	0	1228776..1229498	-	240	116618334	-	LEUM_1234	-	ABC-type polar amino acid transport system, ATPase component
1161	 39.24	0	1229491..1230150	-	219	116618335	-	LEUM_1235	-	ABC-type amino acid transport system, pemease component
1162	 34.41	-1	1230162..1230998	-	278	116618336	-	LEUM_1236	-	ABC-type amino acid transport system, periplasmic component
1163	 37.43	0	1231001..1232197	-	398	116618337	-	LEUM_1237	-	cystathionine gamma-synthase
1164	 34.33	-1	1232519..1233424	+	301	116618338	-	LEUM_1238	-	LysR family transcriptional regulator
1165	 39.16	0	1233704..1234441	-	245	116618339	fabG	LEUM_1239	-	3-ketoacyl-(acyl-carrier-protein) reductase
1166	 38.35	0	1234438..1234995	-	185	116618340	-	LEUM_1240	-	hypothetical protein
1167	 40.88	0	1235069..1236367	-	432	116618341	-	LEUM_1241	-	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
1168	 32.12	-1	1238515..1239336	-	273	116618342	-	LEUM_1243	-	AraC-like transcriptional regulator
1169	 38.01	0	1239361..1241499	-	712	116618343	-	LEUM_1244	-	alpha-xylosidase YicI
1170	 37.46	0	1241519..1242922	-	467	116618344	-	LEUM_1245	-	Na+/xyloside symporter related transporter
1171	 35.14	0	1243467..1243910	+	147	116618345	-	LEUM_1246	-	hypothetical protein
1172	 37.09	0	1243903..1244115	+	70	116618346	-	LEUM_1247	-	hypothetical protein
1173	 36.07	0	1244126..1244344	+	72	116618347	-	LEUM_1248	-	hypothetical protein
1174	 42.46	+1	1244629..1244913	-	94	116618348	-	LEUM_1249	-	hypothetical protein
1175	 38.89	0	1244912..1245235	+	107	116618349	-	LEUM_1250	-	hypothetical protein
1176	 34.50	-1	1245248..1245505	+	85	116618350	-	LEUM_1251	-	hypothetical protein
1177	 34.75	0	1246246..1248501	-	751	116618351	-	LEUM_1252	-	subtilisin-like serine protease
1178	 32.47	-1	1248494..1249540	-	348	116618352	-	LEUM_1253	-	ATPase of the AAA+ class
1179	 37.94	0	1249919..1250548	+	209	116618353	-	LEUM_1254	-	hypothetical protein
1180	 33.33	-1	1250598..1250840	-	80	116618354	-	LEUM_1255	-	hypothetical protein
1181	 37.24	0	1250852..1251619	-	255	116618355	-	LEUM_1256	-	hypothetical protein
1182	 40.08	0	1251638..1252348	-	236	116618356	-	LEUM_1257	-	hypothetical protein
1183	 31.75	-1	1252332..1252646	-	104	116618357	-	LEUM_1258	-	hypothetical protein
1184	 37.39	0	1252636..1253349	-	237	116618358	-	LEUM_1259	-	hypothetical protein
1185	 30.72	-2	1253367..1253672	-	101	116618359	-	LEUM_1260	-	hypothetical protein
1186	 36.59	0	1253662..1254459	-	265	116618360	-	LEUM_1261	-	DNA-entry nuclease
1187	 34.00	-1	1254554..1254853	-	99	116618361	-	LEUM_1262	-	hypothetical protein
1188	 36.33	0	1255062..1256030	-	322	116618362	-	LEUM_1263	-	hypothetical protein
1189	 36.50	0	1256036..1256446	-	136	116618363	-	LEUM_1264	-	single-stranded DNA-binding protein
1190	 34.47	-1	1256436..1256786	-	116	116618364	-	LEUM_1265	-	hypothetical protein
1191	 35.21	0	1256764..1257030	-	88	116618365	-	LEUM_1266	-	hypothetical protein
1192	 34.29	-1	1257057..1257998	-	313	116618366	-	LEUM_1267	-	hypothetical protein
1193	 34.74	0	1258010..1258222	-	70	116618367	-	LEUM_1268	-	XRE family transcriptional regulator
1194	 30.95	-2	1258464..1258757	-	97	116618368	-	LEUM_1269	-	hypothetical protein
1195	 40.45	0	1258779..1259621	-	280	116618369	-	LEUM_1270	-	phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID
1196	 42.25	+1	1259623..1260486	-	287	116618370	-	LEUM_1271	-	phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC
1197	 37.98	0	1260512..1261006	-	164	116618371	-	LEUM_1272	-	phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB
1198	 39.35	0	1261022..1261453	-	143	116618372	-	LEUM_1273	-	phosphotransferase system, mannose/fructose-specific component IIA
1199	 32.29	-1	1261636..1262211	-	191	116618373	-	LEUM_1274	-	transcriptional regulator
1200	 33.60	-1	1262354..1263490	+	378	116618374	-	LEUM_1275	-	alpha/beta fold family hydrolase
1201	 36.11	0	1263593..1263736	+	47	116618375	-	LEUM_1276	-	hypothetical protein
1202	 37.72	0	1263777..1264643	-	288	116618376	-	LEUM_1277	-	Rossmann fold nucleotide-binding protein for DNA uptake
1203	 37.75	0	1264698..1266575	-	625	116618377	-	LEUM_1278	-	ABC transporter ATPase
1204	 39.30	0	1266669..1267607	+	312	116618378	-	LEUM_1279	-	dihydroorotate dehydrogenase 1A
1205	 38.58	0	1267636..1268892	-	418	116618379	-	LEUM_1280	-	acetate kinase
1206	 37.85	0	1269049..1269912	+	287	116618380	-	LEUM_1281	-	N-acetylmuramoyl-L-alanine amidase
1207	 32.33	-1	1269912..1270211	+	99	116618381	-	LEUM_1282	-	hypothetical protein
1208	 39.08	0	1270271..1272463	-	730	116618382	-	LEUM_1283	-	transcriptional accessory protein
1209	 39.81	0	1272586..1273017	-	143	116618383	-	LEUM_1284	-	UspA family nucleotide-binding protein
1210	 30.40	-2	1273359..1273835	-	158	116618384	-	LEUM_1285	-	large-conductance mechanosensitive channel
1211	 41.94	+1	1273996..1276284	-	762	116618385	-	LEUM_1286	-	hypothetical protein
1212	 39.67	0	1276716..1277630	+	304	116618386	-	LEUM_1287	-	cystathionine beta-synthase (acetylserine-dependent)
1213	 38.95	0	1277641..1278780	+	379	116618387	-	LEUM_1288	-	cystathionine gamma-lyase
1214	 44.04	+1	1278794..1279288	+	164	116618388	-	LEUM_1289	-	Serine acetyltransferase
1215	 42.39	+1	1279546..1279821	-	91	116618389	-	LEUM_1290	-	nucleoid protein Hbs
1216	 39.82	0	1279995..1281305	-	436	116618390	-	LEUM_1291	-	GTPase
1217	 42.32	+1	1281380..1282570	-	396	116618391	-	LEUM_1292	-	SSU ribosomal protein S1P
1218	 38.22	0	1282665..1283339	-	224	116618392	-	LEUM_1293	-	cytidylate kinase
1219	 39.61	0	1283357..1283914	-	185	116618393	-	LEUM_1294	-	LysM domain-containing protein
1220	 36.04	0	1283988..1284578	-	196	116618394	-	LEUM_1295	-	hypothetical protein
1221	 42.67	+1	1284842..1285591	-	249	116618395	-	LEUM_1296	-	ribosomal large subunit pseudouridine synthase B
1222	 37.00	0	1285584..1286183	-	199	116618396	-	LEUM_1297	-	condensin subunit ScpB
1223	 37.32	0	1286176..1286853	-	225	116618397	-	LEUM_1298	-	condensin subunit ScpA
1224	 35.47	0	1286919..1287293	-	124	116618398	-	LEUM_1299	-	riboflavin biosynthesis acetyltransferase RibT
1225	 37.02	0	1287299..1288192	-	297	116618399	-	LEUM_1300	-	tyrosine recombinase XerD subunit
1226	 38.89	0	1288192..1289055	-	287	116618400	-	LEUM_1301	-	RNA-binding protein
1227	 37.81	0	1289144..1289590	-	148	116618401	-	LEUM_1302	-	GatB/YqeY domain-containing protein
1228	 43.55	+1	1289673..1289858	-	61	116618402	-	LEUM_1303	-	SSU ribosomal protein S21P
1229	 38.34	0	1289995..1290993	-	332	116618403	-	LEUM_1304	-	major facilitator superfamily permease
1230	 36.76	0	1291404..1292951	+	515	116618404	-	LEUM_1306	-	CdaR family transcriptional regulator
1231	 38.73	0	1293053..1294459	+	468	116618405	-	LEUM_1307	-	gamma-aminobutyrate permease related permease
1232	 42.10	+1	1294516..1295382	-	288	116618406	-	LEUM_1308	-	hypothetical protein
1233	 41.05	0	1295484..1297259	-	591	116618407	-	LEUM_1309	-	aspartyl-tRNA synthetase
1234	 39.78	0	1297256..1298557	-	433	116618408	-	LEUM_1310	-	histidyl-tRNA synthetase
1235	 39.26	0	1298966..1299961	-	331	116618409	-	LEUM_1311	-	aldose 1-epimerase
1236	 35.91	0	1300135..1301064	+	309	116618410	-	LEUM_1312	-	AraC family transcriptional regulator
1237	 38.53	0	1301061..1302233	-	390	116618411	-	LEUM_1313	-	galactokinase
1238	 38.22	0	1302262..1303674	-	470	116618412	-	LEUM_1314	-	Na+/xyloside symporter related transporter
1239	 37.60	0	1303869..1304876	-	335	116618413	-	LEUM_1315	-	aryl-alcohol dehydrogenase
1240	 38.25	0	1304869..1307979	-	1036	116618414	lacZ	LEUM_1316	-	beta-D-galactosidase
1241	 40.34	0	1308203..1309558	+	451	116618415	-	LEUM_1317	-	hypothetical protein
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.