IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1055	 41.61	+1	1125268..1126149	+	293	116618229	-	LEUM_1128	-	sortase (surface protein transpeptidase)
1056	 41.41	+1	1126215..1128233	+	672	116618230	-	LEUM_1129	-	hypothetical protein
1057	 41.18	0	1128845..1129762	+	305	116618231	-	LEUM_1130	-	IS30 family transposase
1058	 39.77	0	1129916..1130941	+	341	116618232	-	LEUM_1131	-	IS30 family transposase
1059	 34.60	0	1131353..1131826	-	157	116618233	-	LEUM_1132	-	NUDIX family hydrolase
1060	 41.18	0	1131969..1132886	+	305	116618234	-	LEUM_1133	-	IS30 family transposase
1061	 31.81	-1	1133039..1133431	+	130	116618235	-	LEUM_1134	-	histidinol phosphatase related phosphatase
1062	 32.74	-1	1133474..1133812	-	112	116618236	-	LEUM_1135	-	hypothetical protein
1063	 35.28	0	1133865..1134479	-	204	116618237	-	LEUM_1136	-	permease, cadmium resistance protein
1064	 38.16	0	1134612..1135025	-	137	116618238	-	LEUM_1137	-	cytidine deaminase
1065	 36.83	0	1135246..1135674	+	142	116618239	-	LEUM_1138	-	diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
1066	 35.78	0	1135780..1136187	+	135	116618240	-	LEUM_1139	-	hypothetical protein
1067	 32.56	-1	1136179..1136955	-	258	116618241	-	LEUM_1140	-	AraC family transcriptional regulator
1068	 33.18	-1	1137032..1137664	-	210	116618242	-	LEUM_1141	-	DNA-binding response regulator
1069	 34.90	0	1137669..1138877	-	402	116618243	-	LEUM_1142	-	Signal transduction histidine kinase
1070	 39.20	0	1138955..1141069	-	704	116618244	-	LEUM_1143	-	hypothetical protein
1071	 36.36	0	1141214..1141675	+	153	116618245	-	LEUM_1144	-	acetyltransferase
1072	 39.61	0	1141718..1143088	-	456	116618246	-	LEUM_1145	-	FAD/FMN-containing dehydrogenase
1073	 37.92	0	1143115..1144314	-	399	116618247	-	LEUM_1146	-	major facilitator superfamily permease
1074	 32.16	-1	1144433..1145368	-	311	116618248	-	LEUM_1147	-	AraC family transcriptional regulator
1075	 39.90	0	1145378..1146139	-	253	116618249	-	LEUM_1148	-	Short-chain alcohol dehydrogenase
1076	 34.12	-1	1146245..1147387	-	380	116618250	-	LEUM_1149	-	acyltransferase
1077	 35.88	0	1147371..1148900	-	509	116618251	-	LEUM_1150	-	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
1078	 35.91	0	1148920..1149888	-	322	116618252	-	LEUM_1151	-	ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component
1079	 38.87	0	1149885..1150607	-	240	116618253	-	LEUM_1152	-	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
1080	 34.36	-1	1150612..1151388	-	258	116618254	-	LEUM_1153	-	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
1081	 35.75	0	1151586..1152785	-	399	116618255	-	LEUM_1154	-	acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase-like protein
1082	 38.87	0	1154042..1154818	-	258	116618256	thiG	LEUM_1156	-	thiazole synthase
1083	 38.73	0	1154840..1155487	-	215	116618257	-	LEUM_1157	-	thiamine biosynthesis protein ThiF
1084	 32.83	-1	1155498..1155695	-	65	116618258	-	LEUM_1158	-	sulfur transfer protein for thiamine biosynthesis
1085	 38.65	0	1155722..1156360	-	212	116618259	-	LEUM_1159	-	thiamine monophosphate synthase
1086	 40.14	0	1156732..1157613	-	293	116618260	-	LEUM_1160	-	3-dehydroquinate dehydratase
1087	 35.32	0	1157610..1158164	-	184	116618261	-	LEUM_1161	-	hypothetical protein
1088	 39.33	0	1158168..1158968	-	266	116618262	-	LEUM_1162	-	shikimate kinase / chorismate mutase
1089	 36.97	0	1158976..1159827	-	283	116618263	-	LEUM_1163	-	prephenate dehydrogenase
1090	 41.92	+1	1159824..1161128	-	434	116618264	-	LEUM_1164	-	3-phosphoshikimate 1-carboxyvinyltransferase
1091	 42.07	+1	1161175..1162353	-	392	116618265	-	LEUM_1165	-	chorismate synthase
1092	 39.44	0	1162355..1163419	-	354	116618266	-	LEUM_1166	-	3-dehydroquinate synthase
1093	 42.40	+1	1163416..1164408	-	330	116618267	-	LEUM_1167	-	3-deoxy-D-arabinoheptulosonate-7-phosphate synthase
1094	 41.58	+1	1164413..1165237	-	274	116618268	-	LEUM_1168	-	shikimate dehydrogenase
1095	 42.80	+1	1165234..1167156	-	640	116618269	-	LEUM_1169	-	transketolase
1096	 38.74	0	1167538..1168110	-	190	116618270	-	LEUM_1170	-	anthranilate synthase, component II
1097	 39.19	0	1168107..1169471	-	454	116618271	-	LEUM_1171	-	anthranilate synthase component I
1098	 37.97	0	1169458..1170234	-	258	116618272	-	LEUM_1172	-	tryptophan synthase, alpha chain
1099	 38.02	0	1170231..1170806	-	191	116618273	-	LEUM_1173	-	phosphoribosylanthranilate isomerase
1100	 37.77	0	1170803..1171591	-	262	116618274	-	LEUM_1174	-	indole-3-glycerol phosphate synthase
1101	 41.72	+1	1171588..1172613	-	341	116618275	-	LEUM_1175	-	anthranilate phosphoribosyltransferase
1102	 40.32	0	1172606..1173793	-	395	116618276	-	LEUM_1176	-	tryptophan synthase subunit beta
1103	 39.25	0	1174228..1175106	-	292	116618277	-	LEUM_1177	-	galactose mutarotase-like protein
1104	 33.78	-1	1175171..1176073	-	300	116618278	-	LEUM_1178	-	tyrosine recombinase XerC subunit
1105	 34.47	-1	1176215..1176655	+	146	116618279	-	LEUM_1179	-	hypothetical protein
1106	 41.15	0	1176689..1178032	-	447	116618280	-	LEUM_1180	-	hypothetical protein
1107	 36.20	0	1178086..1178364	-	92	116618281	-	LEUM_1181	-	hypothetical protein
1108	 40.99	0	1178590..1179033	-	147	116618282	-	LEUM_1182	-	purine deoxyribosyltransferase
1109	 34.12	-1	1179300..1179935	+	211	116618283	-	LEUM_1183	-	hypothetical protein
1110	 36.96	0	1179963..1181120	-	385	116618284	-	LEUM_1184	-	hydroxymethylglutaryl-CoA synthase
1111	 38.08	0	1181256..1182878	-	540	116618285	-	LEUM_1185	-	ABC transporter ATPase
1112	 34.93	0	1183042..1183479	-	145	116618286	-	LEUM_1186	-	hypothetical protein
1113	 38.89	0	1183528..1184265	-	245	116618287	-	LEUM_1187	-	hypothetical protein
1114	 40.74	0	1184265..1185155	-	296	116618288	-	LEUM_1188	-	50S ribosomal protein L11P methyltransferase
1115	 40.99	0	1185142..1186212	-	356	116618289	-	LEUM_1189	-	NADPH:quinone reductase related Zn-dependent oxidoreductase
1116	 37.50	0	1186209..1187000	-	263	116618290	-	LEUM_1190	-	hypothetical protein
1117	 41.98	+1	1186984..1188846	-	620	116618291	-	LEUM_1191	-	GTP-binding protein LepA
1118	 39.03	0	1188966..1190018	-	350	116618292	-	LEUM_1192	-	dehydrogenase
1119	 39.89	0	1190062..1192119	-	685	116618293	-	LEUM_1193	-	glycyl-tRNA synthetase, beta subunit
1120	 39.81	0	1192157..1193098	-	313	116618294	glyQ	LEUM_1194	-	glycyl-tRNA synthetase subunit alpha
1121	 36.75	0	1193376..1194488	-	370	116618295	-	LEUM_1195	-	hypothetical protein
1122	 39.56	0	1194571..1195116	-	181	116618296	-	LEUM_1196	-	ribosome recycling factor
1123	 42.29	+1	1195116..1195841	-	241	116618297	-	LEUM_1197	-	uridylate kinase
1124	 40.87	0	1195988..1196863	-	291	116618298	-	LEUM_1198	-	translation elongation factor Ts (EF-Ts)
1125	 40.54	0	1196973..1197749	-	258	116618299	-	LEUM_1199	-	SSU ribosomal protein S2P
1126	 35.53	0	1197895..1198167	-	90	116618300	-	LEUM_1200	-	URI-like endonuclease
1127	 39.08	0	1198164..1198928	-	254	116618301	-	LEUM_1201	-	O-methyltransferase
1128	 38.81	0	1198988..1199626	+	212	116618302	-	LEUM_1202	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1129	 35.02	0	1199637..1199873	-	78	116618303	-	LEUM_1203	-	hypothetical protein
1130	 38.34	0	1200123..1200761	+	212	116618304	-	LEUM_1204	-	XRE family transcriptional regulator
1131	 39.65	0	1200801..1201433	-	210	116618305	-	LEUM_1205	-	orotate phosphoribosyltransferase
1132	 39.37	0	1201434..1202129	-	231	116618306	-	LEUM_1206	-	orotidine-5'-phosphate decarboxylase
1133	 40.91	0	1202174..1205353	-	1059	116618307	-	LEUM_1207	-	carbamoyl-phosphate synthase large subunit
1134	 41.53	+1	1205346..1206431	-	361	116618308	-	LEUM_1208	-	carbamoyl-phosphate synthase small subunit
1135	 40.61	0	1206428..1207705	-	425	116618309	-	LEUM_1209	-	dihydroorotase
1136	 38.26	0	1207710..1208603	-	297	116618310	-	LEUM_1210	-	aspartate carbamoyltransferase catalytic subunit
1137	 37.02	0	1208781..1209404	-	207	116618311	-	LEUM_1211	-	Signal peptidase I
1138	 36.16	0	1209465..1209818	-	117	116618312	-	LEUM_1212	-	hypothetical protein
1139	 38.19	0	1209907..1211967	-	686	116618313	-	LEUM_1213	-	membrane carboxypeptidase (penicillin-binding protein)
1140	 38.43	0	1211971..1212441	-	156	116618314	-	LEUM_1214	-	ArgR family transcriptional regulator
1141	 39.07	0	1212554..1214245	-	563	116618315	-	LEUM_1215	-	arginyl-tRNA synthetase
1142	 38.89	0	1214525..1214794	-	89	116618316	-	LEUM_1216	-	hypothetical protein
1143	 39.64	0	1214849..1216054	-	401	116618317	-	LEUM_1217	-	phosphopantothenoylcysteine decarboxylase / phosphopantothenate-cysteine ligase
1144	 36.75	0	1216125..1216622	-	165	116618318	-	LEUM_1218	-	hypothetical protein
1145	 40.20	0	1216619..1217434	-	271	116618319	-	LEUM_1219	-	membrane protease family stomatin/prohibitin-like protein
1146	 37.36	0	1217446..1217793	-	115	116618320	-	LEUM_1220	-	hypothetical protein
1147	 39.71	0	1217898..1218101	-	67	116618321	-	LEUM_1221	-	hypothetical protein
1148	 33.33	-1	1219144..1219662	-	172	116618322	-	LEUM_1222	-	hypothetical protein
1149	 42.59	+1	1219650..1219703	-	17	116618323	-	LEUM_1223	-	hypothetical protein
1150	 33.33	-1	1220231..1220449	+	72	116618324	-	LEUM_1224	-	hypothetical protein
1151	 39.85	0	1220775..1221434	-	219	116618325	-	LEUM_1225	-	S-adenosylmethionine-dependent methyltransferase
1152	 37.61	0	1221447..1222733	-	428	116618326	-	LEUM_1226	-	ABC transporter permease
1153	 37.11	0	1222723..1223463	-	246	116618327	-	LEUM_1227	-	ABC-type multidrug transport system, ATPase component
1154	 38.06	0	1223626..1224048	+	140	116618328	-	LEUM_1228	-	diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.