IslandPathversion 1.0

IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.86 STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
990	 39.38	0	1059197..1060684	+	495	116618164	-	LEUM_1062	-	hypothetical protein
991	 32.94	-1	1060851..1061864	-	337	116618165	-	LEUM_1063	-	LacI family transcription regulator
992	 35.72	0	1062077..1064128	+	683	116618166	-	LEUM_1064	-	Beta-galactosidase
993	 35.62	0	1064144..1066063	+	639	116618167	-	LEUM_1065	-	Na+/lactose symporter related transporter
994	 37.61	0	1066085..1067323	+	412	116618168	-	LEUM_1066	-	arabinogalactan endo-1,4-beta-galactosidase
995	 38.77	0	1067453..1068961	+	502	116618169	-	LEUM_1067	-	galactose-1-phosphate uridylyltransferase
996	 44.58	+2	1068968..1069972	+	334	116618170	-	LEUM_1068	-	UDP-galactose 4-epimerase
997	 35.77	0	1069995..1071185	+	396	116618171	-	LEUM_1069	-	galactokinase
998	 37.80	0	1071492..1072901	+	469	116618172	-	LEUM_1070	-	transposase
999	 30.69	-2	1073079..1074551	+	490	116618173	-	LEUM_1071	-	hypothetical protein
1000	 26.39	-2	1074551..1074910	+	119	116618174	-	LEUM_1072	-	hypothetical protein
1001	 30.69	-2	1075603..1078026	+	807	116618175	-	LEUM_1073	-	HATPase_c domain-containing protein
1002	 30.18	-2	1078019..1079002	+	327	116618176	-	LEUM_1074	-	signal transduction protein
1003	 31.08	-2	1079091..1080023	+	310	116618177	-	LEUM_1075	-	hypothetical protein
1004	 28.38	-2	1080027..1081580	+	517	116618178	-	LEUM_1076	-	ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
1005	 38.88	0	1082739..1084073	+	444	116618179	-	LEUM_1077	-	major facilitator superfamily permease
1006	 35.89	0	1084114..1084779	+	221	116618180	-	LEUM_1078	-	flavodoxin
1007	 37.65	0	1084822..1085655	+	277	116618181	-	LEUM_1079	-	peptidase
1008	 36.81	0	1085802..1086434	+	210	116618182	-	LEUM_1080	-	saccharopine dehydrogenase related protein
1009	 38.64	0	1086531..1087208	+	225	116618183	-	LEUM_1081	-	flavodoxin
1010	 34.83	0	1087212..1088480	+	422	116618184	-	LEUM_1082	-	ferric reductase
1011	 39.49	0	1088660..1089649	+	329	116618185	-	LEUM_1083	-	aryl-alcohol dehydrogenase
1012	 38.48	0	1089682..1090128	+	148	116618186	-	LEUM_1084	-	double-stranded beta-helix-like protein
1013	 40.88	0	1090121..1090438	+	105	116618187	-	LEUM_1085	-	gamma-carboxymuconolactone decarboxylase subunit-like protein
1014	 41.13	0	1090507..1091250	+	247	116618188	-	LEUM_1086	-	Short-chain alcohol dehydrogenase of unknown specificity
1015	 35.87	0	1091295..1092161	+	288	116618189	-	LEUM_1087	-	aldo/keto reductase
1016	 40.05	0	1092329..1093207	+	292	116618190	-	LEUM_1088	-	aldo/keto reductase
1017	 34.37	-1	1093240..1093626	+	128	116618191	-	LEUM_1089	-	MerR family transcriptional regulator
1018	 41.86	+1	1093779..1095185	+	468	116618192	-	LEUM_1090	-	NAD-dependent aldehyde dehydrogenase
1019	 31.39	-1	1095274..1096149	+	291	116618193	-	LEUM_1091	-	alpha/beta hydrolase superfamily protein
1020	 37.90	0	1096395..1096613	+	72	116618194	-	LEUM_1092	-	hypothetical protein
1021	 36.19	0	1096955..1097059	+	34	116618195	-	LEUM_1093	-	holin-like toxin
1022	 41.35	+1	1097286..1098608	+	440	116618196	-	LEUM_1094	-	nucleotidyltransferase/DNA polymerase for DNA repair
1023	 39.30	0	1098601..1098969	+	122	116618197	-	LEUM_1095	-	hypothetical protein
1024	 31.76	-1	1098966..1099220	+	84	116618198	-	LEUM_1096	-	hypothetical protein
1025	 35.83	0	1099237..1099557	+	106	116618199	-	LEUM_1097	-	pyrophosphatase
1026	 33.71	-1	1099677..1099940	-	87	116618200	-	LEUM_1098	-	hypothetical protein
1027	 38.58	0	1099953..1100276	-	107	116618201	-	LEUM_1099	-	hypothetical protein
1028	 40.69	0	1100257..1100487	-	76	116618202	-	LEUM_1100	-	hypothetical protein
1029	 46.67	+2	1100505..1100714	+	69	116618203	-	LEUM_1101	-	hypothetical protein
1030	 37.96	0	1100804..1100911	-	35	116618204	-	LEUM_1102	-	hypothetical protein
1031	 37.44	0	1100934..1101152	-	72	116618205	-	LEUM_1103	-	hypothetical protein
1032	 35.90	0	1101298..1101375	-	25	116618206	-	LEUM_1104	-	hypothetical protein
1033	 35.14	0	1101368..1101811	-	147	116618207	-	LEUM_1105	-	hypothetical protein
1034	 37.25	0	1101792..1102148	-	118	116618208	-	LEUM_1106	-	hypothetical protein
1035	 29.80	-2	1102666..1103259	+	197	116618209	-	LEUM_1107	-	hypothetical protein
1036	 38.95	0	1103695..1103961	+	88	116618210	-	LEUM_1108	-	hypothetical protein
1037	 41.93	+1	1103948..1106215	+	755	116618211	-	LEUM_1109	-	hypothetical protein
1038	 42.03	+1	1106229..1106711	+	160	116618212	-	LEUM_1110	-	hypothetical protein
1039	 40.44	0	1106708..1108606	+	632	116618213	-	LEUM_1111	-	ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
1040	 40.71	0	1108593..1111613	+	1006	116618214	-	LEUM_1112	-	Type IV secretory pathway, VirD4 component
1041	 41.94	+1	1111610..1113712	+	700	116618215	-	LEUM_1113	-	hypothetical protein
1042	 36.24	0	1113775..1114290	+	171	116618216	-	LEUM_1114	-	hypothetical protein
1043	 38.30	0	1114346..1114627	-	93	116618217	-	LEUM_1115	-	hypothetical protein
1044	 36.41	0	1114627..1115406	-	259	116618218	-	LEUM_1116	-	chromosome partitioning ATPase
1045	 38.79	0	1115777..1116106	+	109	116618219	-	LEUM_1117	-	hypothetical protein
1046	 38.84	0	1116106..1116759	+	217	116618220	-	LEUM_1118	-	hypothetical protein
1047	 41.41	+1	1116762..1118717	+	651	116618221	-	LEUM_1119	-	Type IV secretory pathway, VirB4 component
1048	 37.95	0	1118719..1118913	+	64	116618222	-	LEUM_1120	-	hypothetical protein
1049	 39.67	0	1120180..1120605	+	141	116618223	-	LEUM_1122	-	Thiol-disulfide isomerase and thioredoxin
1050	 38.17	0	1120608..1121165	+	185	116618224	-	LEUM_1123	-	hypothetical protein
1051	 40.20	0	1121168..1121764	+	198	116618225	-	LEUM_1124	-	hypothetical protein
1052	 32.37	-1	1121928..1122551	+	207	116618226	-	LEUM_1125	-	peptidase E
1053	 44.36	+1	1122714..1123103	+	129	116618227	-	LEUM_1126	-	hypothetical protein
1054	 42.87	+1	1123119..1125257	+	712	116618228	-	LEUM_1127	-	hypothetical protein
1055	 41.61	+1	1125268..1126149	+	293	116618229	-	LEUM_1128	-	sortase (surface protein transpeptidase)
1056	 41.41	+1	1126215..1128233	+	672	116618230	-	LEUM_1129	-	hypothetical protein
1057	 41.18	0	1128845..1129762	+	305	116618231	-	LEUM_1130	-	IS30 family transposase
1058	 39.77	0	1129916..1130941	+	341	116618232	-	LEUM_1131	-	IS30 family transposase
1059	 34.60	0	1131353..1131826	-	157	116618233	-	LEUM_1132	-	NUDIX family hydrolase
1060	 41.18	0	1131969..1132886	+	305	116618234	-	LEUM_1133	-	IS30 family transposase
1061	 31.81	-1	1133039..1133431	+	130	116618235	-	LEUM_1134	-	histidinol phosphatase related phosphatase
1062	 32.74	-1	1133474..1133812	-	112	116618236	-	LEUM_1135	-	hypothetical protein
1063	 35.28	0	1133865..1134479	-	204	116618237	-	LEUM_1136	-	permease, cadmium resistance protein
1064	 38.16	0	1134612..1135025	-	137	116618238	-	LEUM_1137	-	cytidine deaminase
1065	 36.83	0	1135246..1135674	+	142	116618239	-	LEUM_1138	-	diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
1066	 35.78	0	1135780..1136187	+	135	116618240	-	LEUM_1139	-	hypothetical protein
1067	 32.56	-1	1136179..1136955	-	258	116618241	-	LEUM_1140	-	AraC family transcriptional regulator
1068	 33.18	-1	1137032..1137664	-	210	116618242	-	LEUM_1141	-	DNA-binding response regulator
1069	 34.90	0	1137669..1138877	-	402	116618243	-	LEUM_1142	-	Signal transduction histidine kinase
1070	 39.20	0	1138955..1141069	-	704	116618244	-	LEUM_1143	-	hypothetical protein
1071	 36.36	0	1141214..1141675	+	153	116618245	-	LEUM_1144	-	acetyltransferase
1072	 39.61	0	1141718..1143088	-	456	116618246	-	LEUM_1145	-	FAD/FMN-containing dehydrogenase
1073	 37.92	0	1143115..1144314	-	399	116618247	-	LEUM_1146	-	major facilitator superfamily permease
1074	 32.16	-1	1144433..1145368	-	311	116618248	-	LEUM_1147	-	AraC family transcriptional regulator
1075	 39.90	0	1145378..1146139	-	253	116618249	-	LEUM_1148	-	Short-chain alcohol dehydrogenase
1076	 34.12	-1	1146245..1147387	-	380	116618250	-	LEUM_1149	-	acyltransferase
1077	 35.88	0	1147371..1148900	-	509	116618251	-	LEUM_1150	-	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
1078	 35.91	0	1148920..1149888	-	322	116618252	-	LEUM_1151	-	ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component
1079	 38.87	0	1149885..1150607	-	240	116618253	-	LEUM_1152	-	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
1080	 34.36	-1	1150612..1151388	-	258	116618254	-	LEUM_1153	-	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
1081	 35.75	0	1151586..1152785	-	399	116618255	-	LEUM_1154	-	acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase-like protein
1082	 38.87	0	1154042..1154818	-	258	116618256	thiG	LEUM_1156	-	thiazole synthase
1083	 38.73	0	1154840..1155487	-	215	116618257	-	LEUM_1157	-	thiamine biosynthesis protein ThiF
1084	 32.83	-1	1155498..1155695	-	65	116618258	-	LEUM_1158	-	sulfur transfer protein for thiamine biosynthesis
1085	 38.65	0	1155722..1156360	-	212	116618259	-	LEUM_1159	-	thiamine monophosphate synthase
1086	 40.14	0	1156732..1157613	-	293	116618260	-	LEUM_1160	-	3-dehydroquinate dehydratase
1087	 35.32	0	1157610..1158164	-	184	116618261	-	LEUM_1161	-	hypothetical protein
1088	 39.33	0	1158168..1158968	-	266	116618262	-	LEUM_1162	-	shikimate kinase / chorismate mutase
1089	 36.97	0	1158976..1159827	-	283	116618263	-	LEUM_1163	-	prephenate dehydrogenase
37.86	MEAN

3.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.