IslandPath Analysis: Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.86   STD DEV: 3.35
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome - 1..2038396
1970 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
54	 40.55	0	61511..62632	+	373	116617228	-	LEUM_0074	-	ABC-type uncharacterized transport system, permease component
55	 42.74	+1	62634..63590	+	318	116617229	-	LEUM_0075	-	ABC transporter permease
56	 40.00	0	63630..64544	-	304	116617230	-	LEUM_0076	-	malate dehydrogenase (NAD)
57	 39.15	0	64660..65415	-	251	116617231	-	LEUM_0077	-	ABC-type uncharacterized transport system, ATPase component
58	 39.33	0	65408..66307	-	299	116617232	-	LEUM_0078	-	ribose/xylose/arabinose/galactoside ABC-type transporter permease
59	 41.09	0	66304..67308	-	334	116617233	-	LEUM_0079	-	ABC-type uncharacterized transport system, periplasmic component
60	 34.86	0	67775..68362	+	195	116617234	-	LEUM_0080	-	XRE family transcriptional regulator
61	 36.31	0	68420..69157	+	245	116617235	-	LEUM_0081	-	Short-chain alcohol dehydrogenase
62	 34.92	0	69273..69398	+	41	116617236	-	LEUM_0082	-	hypothetical protein
63	 32.67	-1	70221..71570	-	449	116617237	-	LEUM_0083	-	lactococcin A ABC transporter permease protein
64	 36.08	0	71588..73735	-	715	116617238	-	LEUM_0084	-	bacteriocin-processing peptidase
65	 37.85	0	73966..74142	+	58	116617239	-	LEUM_0085	-	hypothetical protein
66	 43.21	+1	74173..74334	+	53	116617240	-	LEUM_0086	-	hypothetical protein
67	 29.08	-2	74331..74636	+	101	116617241	-	LEUM_0087	-	hypothetical protein
68	 28.99	-2	74793..74930	+	45	116617242	-	LEUM_0088	-	hypothetical protein
69	 41.11	0	74945..75124	+	59	116617243	-	LEUM_0089	-	hypothetical protein
70	 39.55	0	75286..75462	+	58	116617244	-	LEUM_0090	-	hypothetical protein
71	 38.01	0	75747..75917	+	56	116617245	-	LEUM_0091	-	hypothetical protein
72	 30.52	-2	75923..76135	+	70	116617246	-	LEUM_0092	-	hypothetical protein
73	 33.20	-1	76407..77132	-	241	116617247	-	LEUM_0093	-	response regulator
74	 32.11	-1	77138..78448	-	436	116617248	-	LEUM_0094	-	signal transduction protein
75	 32.50	-1	78626..78745	+	39	116617249	-	LEUM_0095	-	hypothetical protein
76	 38.81	0	78901..79704	+	267	116617250	-	LEUM_0096	-	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
77	 35.45	0	79688..80254	+	188	116617251	-	LEUM_0097	-	hypothetical protein
78	 41.63	+1	80451..81848	+	465	116617252	-	LEUM_0098	-	fumarate reductase, flavoprotein subunit
79	 35.24	0	82029..82919	+	296	116617253	-	LEUM_0099	-	XRE-family DNA-binding domain-containing protein
80	 35.39	0	82926..83654	+	242	116617254	-	LEUM_0100	-	hypothetical protein
81	 40.51	0	83851..85953	+	700	116617255	-	LEUM_0101	-	glycosyltransferase
82	 36.22	0	85974..86978	+	334	116617256	-	LEUM_0102	-	glycosyltransferase-like protein
83	 30.64	-2	87061..87543	+	160	116617257	-	LEUM_0103	-	GtcA family membrane protein
84	 41.58	+1	87724..89094	+	456	116617258	-	LEUM_0104	-	NAD(FAD)-dependent dehydrogenase
85	 37.04	0	89182..89721	-	179	116617259	-	LEUM_0105	-	periplasmic/secreted protein
86	 39.15	0	90826..91908	+	360	116617260	-	LEUM_0107	-	glutathione S-transferase
87	 38.58	0	91883..93217	+	444	116617261	-	LEUM_0108	-	propionate catabolism protein
88	 34.23	-1	93239..93796	+	185	116617262	-	LEUM_0109	-	acetyltransferase
89	 35.28	0	93811..94479	+	222	116617263	-	LEUM_0110	-	ABC-type amino acid transport system, permease component
90	 36.52	0	94494..95246	+	250	116617264	-	LEUM_0111	-	ABC-type polar amino acid transport system, ATPase component
91	 36.52	0	95281..96096	+	271	116617265	-	LEUM_0112	-	ABC-type amino acid transport system, periplasmic component
92	 40.45	0	96122..97288	+	388	116617266	-	LEUM_0113	-	metal-dependent amidase/aminoacylase/carboxypeptidase
93	 37.78	0	97303..97617	+	104	116617267	-	LEUM_0114	-	thioredoxin
94	 38.42	0	98013..98759	+	248	116617268	-	LEUM_0115	-	metal-dependent hydrolase
95	 36.86	0	98761..100092	+	443	116617269	-	LEUM_0116	-	amino acid transporter
96	 39.12	0	100143..100919	+	258	116617270	-	LEUM_0117	-	acetoin reductase
97	 36.00	0	100967..101830	+	287	116617271	-	LEUM_0118	-	ABC-type metal ion transport system, periplasmic component/surface antigen
98	 36.07	0	101869..102525	+	218	116617272	-	LEUM_0119	-	ABC-type amino acid transport system, permease component
99	 33.48	-1	102506..103186	+	226	116617273	-	LEUM_0120	-	ABC-type amino acid transport system, permease component
100	 36.03	0	103179..103919	+	246	116617274	-	LEUM_0121	-	ABC-type polar amino acid transport system, ATPase component
101	 35.82	0	103980..104825	+	281	116617275	-	LEUM_0122	-	amino acid ABC transporter periplasmic protein
102	 39.39	0	104881..106002	+	373	116617276	solA	LEUM_0123	-	N-methyltryptophan oxidase
103	 41.35	+1	106151..106549	+	132	116617277	-	LEUM_0124	-	camphor resistance protein CrcB
104	 43.95	+1	106546..106884	+	112	116617278	-	LEUM_0125	-	camphor resistance protein CrcB
105	 40.93	0	106928..107809	+	293	116617279	-	LEUM_0126	-	hypothetical protein
106	 41.63	+1	107893..108531	+	212	116617280	-	LEUM_0127	-	hemolysin III-like protein
107	 40.14	0	108674..110128	+	484	116617281	-	LEUM_0128	-	D-xylose proton-symporter
108	 39.49	0	110334..111503	+	389	116617282	-	LEUM_0129	-	transcriptional regulator/sugar kinase, xylose operon regulator
109	 38.23	0	111678..113024	+	448	116617283	-	LEUM_0130	-	xylose isomerase
110	 40.87	0	113171..114682	+	503	116617284	-	LEUM_0131	-	xylulokinase
111	 36.96	0	115011..115892	+	293	116617285	-	LEUM_0133	-	undecaprenyl pyrophosphate phosphatase
112	 38.76	0	116440..117471	+	343	116617286	-	LEUM_0134	-	uroporphyrinogen-III decarboxylase
113	 36.93	0	117464..118465	+	333	116617287	-	LEUM_0135	-	uroporphyrinogen-III decarboxylase
114	 38.10	0	118481..119341	+	286	116617288	-	LEUM_0136	-	ABC-type amino acid transport systems, periplasmic component
115	 38.59	0	119365..120087	+	240	116617289	-	LEUM_0137	-	ABC-type amino acid transport permease component
116	 36.15	0	120084..120794	+	236	116617290	-	LEUM_0138	-	ABC-type amino acid transport permease component
117	 37.55	0	120805..121587	+	260	116617291	-	LEUM_0139	-	ABC-type polar amino acid transport system, ATPase component
118	 41.40	+1	121706..123217	+	503	116617292	-	LEUM_0140	-	peptide chain release factor 3
119	 38.31	0	123307..123849	+	180	116617293	-	LEUM_0141	-	hypothetical protein
120	 37.28	0	124136..124693	+	185	116617294	-	LEUM_0142	-	hypothetical protein
121	 41.06	0	124732..125559	+	275	116617295	-	LEUM_0143	-	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
122	 40.06	0	125576..126259	-	227	116617296	-	LEUM_0144	-	hypothetical protein
123	 40.54	0	126386..127162	+	258	116617297	-	LEUM_0145	-	acetoin reductase
124	 41.07	0	127389..130091	+	900	116617298	-	LEUM_0146	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
125	 41.38	+1	130124..131614	-	496	116617299	-	LEUM_0147	-	tRNA (uracil-5-)-methyltransferase related enzyme
126	 37.97	0	131686..132849	-	387	116617300	-	LEUM_0148	-	hypothetical protein
127	 36.00	0	133123..133347	+	74	116617301	-	LEUM_0149	-	hypothetical protein
128	 43.05	+1	133404..135554	+	716	116617302	-	LEUM_0150	-	ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
129	 35.85	0	135662..136654	+	330	116617303	-	LEUM_0151	-	hypothetical protein
130	 39.40	0	136666..137604	+	312	116617304	-	LEUM_0152	-	ADP-ribose pyrophosphatase with uncharacterized conserved domain
131	 40.39	0	137636..139066	-	476	116617305	-	LEUM_0153	-	fumarase
132	 42.50	+1	139184..139870	-	228	116617306	-	LEUM_0154	-	ribose-5-phosphate isomerase
133	 38.65	0	139867..140148	-	93	116617307	-	LEUM_0155	-	acetyltransferase
134	 38.70	0	140381..140920	+	179	116617308	-	LEUM_0156	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
135	 41.97	+1	141112..142338	+	408	116617309	-	LEUM_0157	-	DNA repair protein RadA
136	 38.40	0	142341..142715	+	124	116617310	-	LEUM_0158	-	hypothetical protein
137	 37.13	0	142761..143999	-	412	116617311	-	LEUM_0159	-	hypothetical protein
138	 35.20	0	144134..144721	+	195	116617312	-	LEUM_0160	-	transcriptional regulator
139	 41.22	+1	144820..146316	+	498	116617313	-	LEUM_0161	-	glutamyl-tRNA synthetase
140	 39.94	0	146458..147864	+	468	116617314	-	LEUM_0162	-	cysteinyl-tRNA synthetase
141	 40.37	0	155266..156573	+	435	116617315	-	LEUM_0182	-	seryl-tRNA synthetase
142	 39.72	0	156709..159120	+	803	116617316	-	LEUM_0183	-	protein translocase subunit secA
143	 40.57	0	159171..160289	+	372	116617317	-	LEUM_0184	-	peptide chain release factor 2
144	 40.59	0	160435..162915	+	826	116617318	-	LEUM_0185	-	ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
145	 33.79	-1	162920..163579	-	219	116617319	-	LEUM_0186	-	Type II secretory pathway, prepilin signal peptidase PulO
146	 43.72	+1	163832..164245	+	137	116617320	rpsL	LEUM_0187	-	30S ribosomal protein S12
147	 42.89	+1	164261..164731	+	156	116617321	-	LEUM_0188	-	30S ribosomal protein S7
148	 42.09	+1	164892..167003	+	703	116617322	-	LEUM_0189	-	translation elongation factor 2 (EF-2/EF-G)
149	 38.11	0	167094..168287	+	397	116617323	-	LEUM_0190	-	cyanate permease
150	 36.95	0	168368..169474	+	368	116617324	-	LEUM_0191	-	ABC-type spermidine/putrescine transport systems, ATPase component
151	 37.97	0	169464..170282	+	272	116617325	-	LEUM_0192	-	spermidine/putrescine ABC transporter permease protein
152	 36.46	0	170296..171126	+	276	116617326	-	LEUM_0193	-	spermidine/putrescine ABC transporter permease protein
153	 34.91	0	171128..172207	+	359	116617327	-	LEUM_0194	-	spermidine/putrescine-binding periplasmic protein
37.86	MEAN

3.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.