IslandPath Analysis: Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 36.46   STD DEV: 3.21
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome II, complete sequence - 1..350181
264 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
48	 33.54	0	52134..52613	+	159	45655634	-	LIC20051	-	hypothetical protein
49	 37.71	0	52991..53812	+	273	45655635	scd	LIC20052	-	fatty acid desaturase
50	 33.93	0	55114..55788	+	224	45655636	-	LIC20053	-	hypothetical protein
51	 37.48	0	57065..57715	+	216	45655637	-	LIC20054	-	hypothetical protein
52	 37.33	0	58042..58917	-	291	45655638	-	LIC20055	-	hypothetical protein
53	 35.01	0	59235..59771	+	178	45655639	-	LIC20056	-	hypothetical protein
54	 40.87	+1	59901..60869	-	322	45655640	argK	LIC20057	-	LAO/AO transport system kinase
55	 41.23	+1	60877..62889	-	670	45655641	mcm2	LIC20058	-	methylmalonyl-CoA mutase
56	 33.48	0	62996..64333	+	445	45655642	-	LIC20059	-	hypothetical protein
57	 33.33	0	65464..66156	+	230	45655643	-	LIC20060	-	hypothetical protein
58	 33.05	-1	66779..67852	-	357	45655644	-	LIC20061	-	thiol-disulfide interchange like protein
59	 38.35	0	67981..68259	+	92	45655645	hisE	LIC20062	-	phosphoribosyl-ATP pyrophosphatase
60	 31.16	-1	68263..70194	+	643	45655646	-	LIC20063	-	hypothetical protein
61	 42.35	+1	70663..71427	+	254	45655647	fabG	LIC20064	-	3-oxoacyl-(acyl-carrier protein) reductase
62	 41.88	+1	71920..72153	+	77	45655648	acpP	LIC20065	-	acyl carrier protein
63	 35.08	0	72207..72950	+	247	45655649	rnC	LIC20066	-	dsRNase III
64	 37.59	0	73327..73914	+	195	45655650	-	LIC20067	-	MutT-like protein
65	 37.11	0	73911..74996	+	361	45655651	aroB	LIC20068	-	3-dehydroquinate synthase
66	 35.71	0	74996..75877	+	293	45655652	-	LIC20069	-	small conductance mechanosensitive ion channel
67	 30.08	-1	76088..76579	+	163	45655653	-	LIC20070	-	hypothetical protein
68	 39.56	0	77095..78651	+	518	45655654	-	LIC20071	-	putative FAD-dependent dehydrogenase
69	 41.67	+1	78701..79240	+	179	45655655	-	LIC20072	-	hypothetical protein
70	 37.23	0	79841..80251	-	136	45655656	-	LIC20073	-	hypothetical protein
71	 36.38	0	80308..82245	-	645	45655657	-	LIC20074	-	long-chain-fatty-acid--CoA ligase
72	 35.54	0	82407..85346	+	979	45655658	-	LIC20075	-	adenylate/guanylate cyclase
73	 39.18	0	85904..86656	-	250	45655659	-	LIC20076	-	putative S-adenosyl methionine dependent methyltransferase like protein
74	 35.01	0	86696..88126	-	476	45655660	-	LIC20077	-	polysaccharide deacetylase
75	 40.31	+1	88319..88834	-	171	45655661	-	LIC20078	-	hypothetical protein
76	 34.69	0	89587..90396	+	269	45655662	nagD	LIC20079	-	haloacid dehalogenase-like protein
77	 34.97	0	90403..90831	-	142	45655663	-	LIC20080	-	4-hydroxybenzoyl-CoA thioesterase
78	 30.40	-1	91097..91675	-	192	45655664	-	LIC20081	-	TetR family transcriptional regulator
79	 43.17	+2	92473..93489	+	338	45655665	-	LIC20082	-	ArsR family transcriptional regulator
80	 41.72	+1	93491..94801	+	436	45655666	ahcY	LIC20083	-	S-adenosyl-L-homocysteine hydrolase
81	 40.33	+1	94874..95173	+	99	45655667	-	LIC20084	-	ferredoxin
82	 40.52	+1	95220..98963	+	1247	45655668	metH	LIC20085	-	B12-dependent methionine synthase
83	 37.46	0	99071..99409	+	112	45655669	-	LIC20086	-	hypothetical protein
84	 35.37	0	99745..100677	-	310	45655670	-	LIC20087	-	outer membrane protein
85	 39.27	0	100789..102084	+	431	45655671	pfp	LIC20088	-	diphosphate--fructose-6-phosphate 1-phosphotransferase
86	 37.17	0	102283..104028	-	581	45655672	-	LIC20089	-	sigma factor regulatory protein
87	 38.98	0	104206..105090	-	294	45655673	argB	LIC20090	-	acetylglutamate kinase
88	 34.68	0	105080..105898	+	272	45655674	-	LIC20091	-	short-chain dehydrogenase
89	 34.65	0	106836..108578	-	580	45655675	-	LIC20092	-	hypothetical protein
90	 37.80	0	108571..109062	-	163	45655676	bcp	LIC20093	-	bacterioferritin comigratory protein
91	 36.22	0	109614..111380	+	588	45655677	-	LIC20094	-	adenylate/guanylate cyclase
92	 38.21	0	112543..112911	+	122	45655678	-	LIC20095	-	hypothetical protein
93	 39.62	0	112958..114055	+	365	45655679	-	LIC20096	-	hypothetical protein
94	 37.64	0	114072..114884	+	270	45655680	-	LIC20097	-	short-chain dehydrogenase
95	 35.67	0	114933..115832	-	299	45655681	-	LIC20098	-	phage-related integrase/recombinase
96	 35.56	0	115948..116487	-	179	45655682	aroK	LIC20099	-	shikimate kinase
97	 37.09	0	116484..117335	-	283	45655683	-	LIC20100	-	hypothetical protein
98	 39.31	0	117341..117892	-	183	45655684	cheD	LIC20101	-	hypothetical protein
99	 37.00	0	118019..119245	+	408	45655685	traB	LIC20102	-	pheromone shutdown protein
100	 33.16	-1	119569..120132	+	187	45655686	-	LIC20103	-	hypothetical protein
101	 33.92	0	121327..122511	-	394	45655687	-	LIC20104	-	DNA binding protein
102	 33.51	0	122757..123866	-	369	45655688	-	LIC20105	-	DNA binding protein
103	 31.53	-1	125109..126713	+	534	45655689	-	LIC20106	-	putative diguanylate phosphodiesterase
104	 26.67	-2	127559..128008	+	149	45655690	-	LIC20107	-	hypothetical protein
105	 34.34	0	128943..129341	-	132	45655691	-	LIC20108	-	anti-sigma factor antagonist
106	 31.03	-1	129352..130350	-	332	45655692	-	LIC20109	-	hypothetical protein
107	 35.67	0	130347..131804	-	485	45655693	-	LIC20110	-	hypothetical protein
108	 36.35	0	131807..133300	-	497	45655694	-	LIC20111	-	sigma factor regulatory protein
109	 32.20	-1	134914..135621	-	235	45655695	-	LIC20112	-	periplasmic protein, LipL45 homologue
110	 33.33	0	135874..136425	-	183	45655696	-	LIC20113	-	hypothetical protein
111	 35.81	0	136489..137580	-	363	45655697	-	LIC20114	-	LipL45 homologue
112	 39.46	0	137601..138122	-	173	45655698	-	LIC20115	-	RNA polymerase ECF-type sigma factor
113	 26.54	-2	140003..140650	+	215	45655699	-	LIC20117	-	hypothetical protein
114	 32.46	-1	141160..141501	-	113	45655700	-	LIC20118	-	hypothetical protein
115	 30.29	-1	142054..142677	-	207	45655701	pgmA	LIC20119	-	phosphoglycerate mutase
116	 33.12	-1	142694..143641	-	315	45655702	cobD	LIC20120	-	cobalamin biosynthesis protein
117	 33.14	-1	143645..146236	-	863	45655703	cbiP	LIC20121	-	histidinol-phosphate aminotransferase and cobyric acid synthase
118	 30.94	-1	146236..146820	-	194	45655704	cobU	LIC20122	-	cobinamide kinase
119	 36.11	0	146796..147479	-	227	45655705	-	LIC20123	-	hypothetical protein
120	 36.78	0	147476..148840	-	454	45655706	cobB	LIC20124	-	cobyrinic acid a,c-diamide synthase
121	 36.31	0	148840..149376	-	178	45655707	cobO	LIC20125	-	corrinoid ATP adenosyltransferase
122	 39.35	0	149373..150137	-	254	45655708	cobM	LIC20126	-	precorrin-4-methylase
123	 35.74	0	150151..151644	-	497	45655709	cobJ	LIC20127	-	precorrin-3 C-17 methylase
124	 36.87	0	151641..152798	-	385	45655710	cbiG	LIC20128	-	precorrin methylase
125	 37.39	0	152785..153549	-	254	45655711	cobI	LIC20129	-	precorrin-2 C-20 methlytransferase
126	 37.78	0	153546..154781	-	411	45655712	cobL	LIC20130	-	precorrin-6y methylase
127	 36.31	0	154778..155449	-	223	45655713	cobH	LIC20131	-	precorrin isomerase
128	 40.04	+1	155446..156549	-	367	45655714	cbiD	LIC20132	-	cobalt-precorrin-6A synthase
129	 34.53	0	156553..157302	-	249	45655715	-	LIC20133	-	ferredoxin-like protein
130	 33.06	-1	157308..157679	-	123	45655716	-	LIC20134	-	hypothetical protein
131	 34.19	0	157700..158869	-	389	45655717	-	LIC20135	-	ferredoxin
132	 38.28	0	161226..163349	+	707	45655718	-	LIC20136	-	hypothetical protein
133	 35.60	0	163355..163927	-	190	45655719	-	LIC20137	-	hypothetical protein
134	 38.57	0	163969..165858	+	629	45655720	capD	LIC20138	-	capsular polysaccharide biosynthesis protein
135	 36.73	0	165851..166321	+	156	45655721	-	LIC20139	-	hypothetical protein
136	 38.86	0	166318..167928	+	536	45655722	-	LIC20140	-	putative permease
137	 41.33	+1	168370..169257	+	295	45655723	htpX	LIC20141	-	heat shock protein HtpX
138	 40.07	+1	169778..170311	+	177	45655724	apt	LIC20142	-	adenine phosphoribosyltransferase
139	 36.44	0	170349..171863	+	504	45655725	htrA1	LIC20143	-	HtrA1
140	 35.23	0	171878..173461	+	527	45655726	-	LIC20144	-	HtrA1-like protein
141	 33.90	0	174822..176054	-	410	45655727	-	LIC20145	-	hypothetical protein
142	 32.89	-1	176051..177628	-	525	45655728	-	LIC20146	-	hypothetical protein
143	 39.95	+1	177625..178017	-	130	45655729	-	LIC20147	-	FUR family transcriptional regulator
144	 36.73	0	179702..180379	+	225	45655730	hol	LIC20148	-	heme oxygenase
145	 36.81	0	180354..181562	+	402	45655731	-	LIC20149	-	multidrug-efflux transporter
146	 42.14	+1	181966..182283	-	105	45655732	-	LIC20150	-	hypothetical protein
147	 36.94	0	183184..185316	-	710	45655733	-	LIC20151	-	tonB-dependent outer membrane receptor
36.46	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.