IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 36.46 STD DEV: 3.21
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome II, complete sequence - 1..350181
264 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
135	 36.73	0	165851..166321	+	156	45655721	-	LIC20139	-	hypothetical protein
136	 38.86	0	166318..167928	+	536	45655722	-	LIC20140	-	putative permease
137	 41.33	+1	168370..169257	+	295	45655723	htpX	LIC20141	-	heat shock protein HtpX
138	 40.07	+1	169778..170311	+	177	45655724	apt	LIC20142	-	adenine phosphoribosyltransferase
139	 36.44	0	170349..171863	+	504	45655725	htrA1	LIC20143	-	HtrA1
140	 35.23	0	171878..173461	+	527	45655726	-	LIC20144	-	HtrA1-like protein
141	 33.90	0	174822..176054	-	410	45655727	-	LIC20145	-	hypothetical protein
142	 32.89	-1	176051..177628	-	525	45655728	-	LIC20146	-	hypothetical protein
143	 39.95	+1	177625..178017	-	130	45655729	-	LIC20147	-	FUR family transcriptional regulator
144	 36.73	0	179702..180379	+	225	45655730	hol	LIC20148	-	heme oxygenase
145	 36.81	0	180354..181562	+	402	45655731	-	LIC20149	-	multidrug-efflux transporter
146	 42.14	+1	181966..182283	-	105	45655732	-	LIC20150	-	hypothetical protein
147	 36.94	0	183184..185316	-	710	45655733	-	LIC20151	-	tonB-dependent outer membrane receptor
148	 39.89	+1	185295..185996	-	233	45655734	-	LIC20152	-	hypothetical protein
149	 39.72	+1	186021..186599	-	192	45655735	-	LIC20153	-	hypothetical protein
150	 31.96	-1	187071..187796	+	241	45655736	-	LIC20154	-	lipoprotein
151	 33.33	0	187809..188582	-	257	45655737	-	LIC20155	-	hypothetical protein
152	 35.29	0	189000..189305	-	101	45655738	-	LIC20156	-	hypothetical protein
153	 36.50	0	189410..190765	-	451	45655739	-	LIC20157	-	hypothetical protein
154	 37.58	0	191023..192645	-	540	45655740	lonA	LIC20158	-	ATP-dependent protease
155	 35.13	0	192671..193729	-	352	45655741	queA	LIC20159	-	S-adenosylmethionine--tRNA ribosyltransferase-isomerase
156	 31.54	-1	193976..195370	+	464	45655742	-	LIC20160	-	hypothetical protein
157	 36.13	0	195390..196532	+	380	45655743	-	LIC20161	-	mannosyltransferase
158	 32.81	-1	196537..197109	+	190	45655744	-	LIC20162	-	hypothetical protein
159	 32.76	-1	197539..198927	+	462	45655745	-	LIC20163	-	hypothetical protein
160	 33.55	0	198999..200411	+	470	45655746	-	LIC20164	-	alginate O-acetyltransferase
161	 34.71	0	200426..201586	+	386	45655747	-	LIC20165	-	hypothetical protein
162	 34.33	0	201583..202980	+	465	45655748	-	LIC20166	-	alginate O-acetyltransferase
163	 34.55	0	202987..204057	+	356	45655749	-	LIC20167	-	hypothetical protein
164	 33.91	0	204054..204398	+	114	45655750	-	LIC20168	-	hypothetical protein
165	 31.16	-1	205175..205588	-	137	45655751	-	LIC20169	-	ExbD/TolR biopolymer transport protein
166	 34.66	0	205585..206112	-	175	45655752	-	LIC20170	-	MotA/TolQ/ExbB proton channel family protein
167	 34.93	0	206725..207474	+	249	45655753	ubiE	LIC20171	-	ubiquinone/menaquinone biosynthesis methyltransferase
168	 40.11	+1	207557..209710	+	717	45655754	-	LIC20172	-	lipoprotein
169	 34.70	0	209755..211146	+	463	45655755	-	LIC20173	-	hypothetical protein
170	 36.48	0	211129..213228	-	699	45655756	-	LIC20174	-	hypothetical protein
171	 38.63	0	214536..214988	-	150	45655757	dksA	LIC20175	-	dnaK suppressor
172	 40.29	+1	217270..219324	+	684	45655758	-	LIC20176	-	lipoprotein
173	 35.39	0	219425..219958	+	177	45655759	-	LIC20177	-	FimH-like protein
174	 28.62	-2	221026..222297	+	423	45655760	-	LIC20178	-	DNA binding protein
175	 27.36	-2	224207..224608	-	133	45655761	-	LIC20179	-	hypothetical protein
176	 34.32	0	226084..227802	-	572	45655762	-	LIC20180	-	response regulator
177	 35.35	0	228268..229953	-	561	45655763	-	LIC20181	-	GGDEF family protein
178	 35.75	0	230245..231819	-	524	45655764	-	LIC20182	-	GGDEF family protein
179	 32.58	-1	232351..234876	+	841	45655765	-	LIC20183	-	histidine kinase sensor protein
180	 32.05	-1	235359..236060	-	233	45655767	-	LIC20185	-	hypothetical protein
181	 41.42	+1	236103..236510	-	135	45655768	-	LIC20186	-	hypothetical protein
182	 37.01	0	236793..237797	-	334	45655769	-	LIC20187	-	hypothetical protein
183	 38.30	0	238678..240066	-	462	45655770	-	LIC20188	-	sodium/solute symporter family protein
184	 32.80	-1	240473..240844	+	123	45655771	-	LIC20189	-	hypothetical protein
185	 30.04	-1	241108..242565	+	485	45655772	-	LIC20190	-	hypothetical protein
186	 37.81	0	243091..245055	-	654	45655773	-	LIC20191	-	hypothetical protein
187	 39.93	+1	245183..246061	-	292	45655774	-	LIC20192	-	hypothetical protein
188	 40.93	+1	248366..249655	+	429	45655775	-	LIC20195	-	4-hydroxybutyrate CoA transferase
189	 39.11	0	249924..250442	+	172	45655776	-	LIC20196	-	hypothetical protein
190	 39.08	0	250455..252854	+	799	45655777	-	LIC20197	-	cysteine protease
191	 34.52	0	253515..254867	-	450	45655778	-	LIC20198	-	hypothetical protein
192	 38.41	0	254973..256391	-	472	45655779	galU	LIC20199	-	UTP-glucose-1-phosphate uridyltransferase
193	 35.56	0	256379..256828	-	149	45655780	-	LIC20200	-	hypothetical protein
194	 33.01	-1	256838..257755	+	305	45655781	-	LIC20201	-	hypothetical protein
195	 38.43	0	258538..259656	+	372	45655782	-	LIC20202	-	hypothetical protein
196	 38.07	0	260224..261174	-	316	45655783	yocS	LIC20203	-	bile acid Na+ symporter
197	 37.93	0	262066..263217	-	383	45655784	csdB	LIC20204	-	cysteine desulfurase
198	 38.74	0	263228..264097	-	289	45655785	-	LIC20205	-	hypothetical protein
199	 36.04	0	264160..264786	-	208	45655786	-	LIC20206	-	cytoplasmic membrane protein
200	 35.47	0	264874..265854	+	326	45655787	-	LIC20207	-	major facilitator superfamily permease
201	 41.25	+1	265946..267826	+	626	45655788	-	LIC20208	-	methylmalonyl-COA mutase small subunit
202	 43.97	+2	267823..270021	+	732	45655789	mcmA	LIC20209	-	methylmalonyl-CoA mutase
203	 39.77	+1	270034..271089	+	351	45655790	-	LIC20210	-	arginine/ornithine transport system ATPase
204	 37.30	0	272181..272558	+	125	45655791	-	LIC20211	-	hypothetical protein
205	 37.68	0	272715..273404	+	229	45655792	-	LIC20212	-	hypothetical protein
206	 34.44	0	273406..273855	+	149	45655793	-	LIC20213	-	hypothetical protein
207	 39.61	0	273993..276524	+	843	45655794	-	LIC20214	-	hypothetical protein
208	 37.40	0	276524..277039	+	171	45655795	-	LIC20215	-	hypothetical protein
209	 38.21	0	277118..277732	+	204	45655796	exbB	LIC20216	-	ExbB
210	 43.21	+2	277821..278225	+	134	45655797	exbD	LIC20217	-	hypothetical protein
211	 38.86	0	278235..278885	+	216	45655798	-	LIC20218	-	hypothetical protein
212	 33.84	0	280058..280852	+	264	45655799	-	LIC20219	-	hypothetical protein
213	 41.44	+1	280864..282516	+	550	45655800	gltB	LIC20220	-	glutamate synthase
214	 31.82	-1	282852..283580	+	242	45655801	-	LIC20221	-	hypothetical protein
215	 38.78	0	283577..284017	+	146	45655802	-	LIC20222	-	hypothetical protein
216	 38.43	0	284151..284582	+	143	45655803	-	LIC20223	-	hypothetical protein
217	 34.10	0	285266..287353	+	695	45655804	-	LIC20224	-	histidine kinase sensor protein
218	 40.06	+1	287357..288055	-	232	45655805	-	LIC20225	-	3-oxoacyl-[acyl-carrier protein] reductase
219	 40.13	+1	288068..288817	-	249	45655806	-	LIC20226	-	aldolase class II
220	 37.83	0	288819..289352	-	177	45655807	ard	LIC20227	-	acireductone dioxygenase enzyme ARD and ARD'
221	 38.00	0	291797..292696	+	299	45655808	pstS	LIC20229	-	phosphate ABC transporter periplasmic phosphate-binding protein
222	 38.98	0	292771..293868	+	365	45655809	kamA	LIC20230	-	L-lysine 2, 3-aminomutase
223	 33.33	0	293843..294481	+	212	45655810	-	LIC20231	-	hypothetical protein
224	 34.11	0	294735..295508	+	257	45655811	-	LIC20232	-	hypothetical protein
225	 32.73	-1	296538..297032	-	164	45655812	-	LIC20233	-	cytoplasmic membrane protein
226	 36.38	0	297462..297920	-	152	45655813	-	LIC20234	-	cytoplasmic membrane protein
227	 40.02	+1	301783..302649	-	288	45655814	speH	LIC20238	-	S-adenosylmethionine decarboxylase like protein
228	 43.41	+2	302749..303135	-	128	45655815	speD	LIC20239	-	S-adenosylmethionine decarboxylase proenzyme
229	 36.28	0	303602..304144	-	180	45655816	-	LIC20240	-	hypothetical protein
230	 38.97	0	304174..305343	+	389	45655817	alr	LIC20241	-	alanine racemase
231	 33.51	0	305394..306539	+	381	45655818	-	LIC20242	-	putative acyltransferase
232	 32.79	-1	306560..307471	+	303	45655819	-	LIC20243	-	hypothetical protein
233	 33.84	0	307468..308259	+	263	45655820	-	LIC20244	-	hypothetical protein
234	 30.76	-1	309214..309873	-	219	45655821	-	LIC20245	-	hypothetical protein
36.46	MEAN

3.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.