IslandPath Analysis: Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 36.46   STD DEV: 3.21
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome II, complete sequence - 1..350181
264 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
90	 37.80	0	108571..109062	-	163	45655676	bcp	LIC20093	-	bacterioferritin comigratory protein
91	 36.22	0	109614..111380	+	588	45655677	-	LIC20094	-	adenylate/guanylate cyclase
92	 38.21	0	112543..112911	+	122	45655678	-	LIC20095	-	hypothetical protein
93	 39.62	0	112958..114055	+	365	45655679	-	LIC20096	-	hypothetical protein
94	 37.64	0	114072..114884	+	270	45655680	-	LIC20097	-	short-chain dehydrogenase
95	 35.67	0	114933..115832	-	299	45655681	-	LIC20098	-	phage-related integrase/recombinase
96	 35.56	0	115948..116487	-	179	45655682	aroK	LIC20099	-	shikimate kinase
97	 37.09	0	116484..117335	-	283	45655683	-	LIC20100	-	hypothetical protein
98	 39.31	0	117341..117892	-	183	45655684	cheD	LIC20101	-	hypothetical protein
99	 37.00	0	118019..119245	+	408	45655685	traB	LIC20102	-	pheromone shutdown protein
100	 33.16	-1	119569..120132	+	187	45655686	-	LIC20103	-	hypothetical protein
101	 33.92	0	121327..122511	-	394	45655687	-	LIC20104	-	DNA binding protein
102	 33.51	0	122757..123866	-	369	45655688	-	LIC20105	-	DNA binding protein
103	 31.53	-1	125109..126713	+	534	45655689	-	LIC20106	-	putative diguanylate phosphodiesterase
104	 26.67	-2	127559..128008	+	149	45655690	-	LIC20107	-	hypothetical protein
105	 34.34	0	128943..129341	-	132	45655691	-	LIC20108	-	anti-sigma factor antagonist
106	 31.03	-1	129352..130350	-	332	45655692	-	LIC20109	-	hypothetical protein
107	 35.67	0	130347..131804	-	485	45655693	-	LIC20110	-	hypothetical protein
108	 36.35	0	131807..133300	-	497	45655694	-	LIC20111	-	sigma factor regulatory protein
109	 32.20	-1	134914..135621	-	235	45655695	-	LIC20112	-	periplasmic protein, LipL45 homologue
110	 33.33	0	135874..136425	-	183	45655696	-	LIC20113	-	hypothetical protein
111	 35.81	0	136489..137580	-	363	45655697	-	LIC20114	-	LipL45 homologue
112	 39.46	0	137601..138122	-	173	45655698	-	LIC20115	-	RNA polymerase ECF-type sigma factor
113	 26.54	-2	140003..140650	+	215	45655699	-	LIC20117	-	hypothetical protein
114	 32.46	-1	141160..141501	-	113	45655700	-	LIC20118	-	hypothetical protein
115	 30.29	-1	142054..142677	-	207	45655701	pgmA	LIC20119	-	phosphoglycerate mutase
116	 33.12	-1	142694..143641	-	315	45655702	cobD	LIC20120	-	cobalamin biosynthesis protein
117	 33.14	-1	143645..146236	-	863	45655703	cbiP	LIC20121	-	histidinol-phosphate aminotransferase and cobyric acid synthase
118	 30.94	-1	146236..146820	-	194	45655704	cobU	LIC20122	-	cobinamide kinase
119	 36.11	0	146796..147479	-	227	45655705	-	LIC20123	-	hypothetical protein
120	 36.78	0	147476..148840	-	454	45655706	cobB	LIC20124	-	cobyrinic acid a,c-diamide synthase
121	 36.31	0	148840..149376	-	178	45655707	cobO	LIC20125	-	corrinoid ATP adenosyltransferase
122	 39.35	0	149373..150137	-	254	45655708	cobM	LIC20126	-	precorrin-4-methylase
123	 35.74	0	150151..151644	-	497	45655709	cobJ	LIC20127	-	precorrin-3 C-17 methylase
124	 36.87	0	151641..152798	-	385	45655710	cbiG	LIC20128	-	precorrin methylase
125	 37.39	0	152785..153549	-	254	45655711	cobI	LIC20129	-	precorrin-2 C-20 methlytransferase
126	 37.78	0	153546..154781	-	411	45655712	cobL	LIC20130	-	precorrin-6y methylase
127	 36.31	0	154778..155449	-	223	45655713	cobH	LIC20131	-	precorrin isomerase
128	 40.04	+1	155446..156549	-	367	45655714	cbiD	LIC20132	-	cobalt-precorrin-6A synthase
129	 34.53	0	156553..157302	-	249	45655715	-	LIC20133	-	ferredoxin-like protein
130	 33.06	-1	157308..157679	-	123	45655716	-	LIC20134	-	hypothetical protein
131	 34.19	0	157700..158869	-	389	45655717	-	LIC20135	-	ferredoxin
132	 38.28	0	161226..163349	+	707	45655718	-	LIC20136	-	hypothetical protein
133	 35.60	0	163355..163927	-	190	45655719	-	LIC20137	-	hypothetical protein
134	 38.57	0	163969..165858	+	629	45655720	capD	LIC20138	-	capsular polysaccharide biosynthesis protein
135	 36.73	0	165851..166321	+	156	45655721	-	LIC20139	-	hypothetical protein
136	 38.86	0	166318..167928	+	536	45655722	-	LIC20140	-	putative permease
137	 41.33	+1	168370..169257	+	295	45655723	htpX	LIC20141	-	heat shock protein HtpX
138	 40.07	+1	169778..170311	+	177	45655724	apt	LIC20142	-	adenine phosphoribosyltransferase
139	 36.44	0	170349..171863	+	504	45655725	htrA1	LIC20143	-	HtrA1
140	 35.23	0	171878..173461	+	527	45655726	-	LIC20144	-	HtrA1-like protein
141	 33.90	0	174822..176054	-	410	45655727	-	LIC20145	-	hypothetical protein
142	 32.89	-1	176051..177628	-	525	45655728	-	LIC20146	-	hypothetical protein
143	 39.95	+1	177625..178017	-	130	45655729	-	LIC20147	-	FUR family transcriptional regulator
144	 36.73	0	179702..180379	+	225	45655730	hol	LIC20148	-	heme oxygenase
145	 36.81	0	180354..181562	+	402	45655731	-	LIC20149	-	multidrug-efflux transporter
146	 42.14	+1	181966..182283	-	105	45655732	-	LIC20150	-	hypothetical protein
147	 36.94	0	183184..185316	-	710	45655733	-	LIC20151	-	tonB-dependent outer membrane receptor
148	 39.89	+1	185295..185996	-	233	45655734	-	LIC20152	-	hypothetical protein
149	 39.72	+1	186021..186599	-	192	45655735	-	LIC20153	-	hypothetical protein
150	 31.96	-1	187071..187796	+	241	45655736	-	LIC20154	-	lipoprotein
151	 33.33	0	187809..188582	-	257	45655737	-	LIC20155	-	hypothetical protein
152	 35.29	0	189000..189305	-	101	45655738	-	LIC20156	-	hypothetical protein
153	 36.50	0	189410..190765	-	451	45655739	-	LIC20157	-	hypothetical protein
154	 37.58	0	191023..192645	-	540	45655740	lonA	LIC20158	-	ATP-dependent protease
155	 35.13	0	192671..193729	-	352	45655741	queA	LIC20159	-	S-adenosylmethionine--tRNA ribosyltransferase-isomerase
156	 31.54	-1	193976..195370	+	464	45655742	-	LIC20160	-	hypothetical protein
157	 36.13	0	195390..196532	+	380	45655743	-	LIC20161	-	mannosyltransferase
158	 32.81	-1	196537..197109	+	190	45655744	-	LIC20162	-	hypothetical protein
159	 32.76	-1	197539..198927	+	462	45655745	-	LIC20163	-	hypothetical protein
160	 33.55	0	198999..200411	+	470	45655746	-	LIC20164	-	alginate O-acetyltransferase
161	 34.71	0	200426..201586	+	386	45655747	-	LIC20165	-	hypothetical protein
162	 34.33	0	201583..202980	+	465	45655748	-	LIC20166	-	alginate O-acetyltransferase
163	 34.55	0	202987..204057	+	356	45655749	-	LIC20167	-	hypothetical protein
164	 33.91	0	204054..204398	+	114	45655750	-	LIC20168	-	hypothetical protein
165	 31.16	-1	205175..205588	-	137	45655751	-	LIC20169	-	ExbD/TolR biopolymer transport protein
166	 34.66	0	205585..206112	-	175	45655752	-	LIC20170	-	MotA/TolQ/ExbB proton channel family protein
167	 34.93	0	206725..207474	+	249	45655753	ubiE	LIC20171	-	ubiquinone/menaquinone biosynthesis methyltransferase
168	 40.11	+1	207557..209710	+	717	45655754	-	LIC20172	-	lipoprotein
169	 34.70	0	209755..211146	+	463	45655755	-	LIC20173	-	hypothetical protein
170	 36.48	0	211129..213228	-	699	45655756	-	LIC20174	-	hypothetical protein
171	 38.63	0	214536..214988	-	150	45655757	dksA	LIC20175	-	dnaK suppressor
172	 40.29	+1	217270..219324	+	684	45655758	-	LIC20176	-	lipoprotein
173	 35.39	0	219425..219958	+	177	45655759	-	LIC20177	-	FimH-like protein
174	 28.62	-2	221026..222297	+	423	45655760	-	LIC20178	-	DNA binding protein
175	 27.36	-2	224207..224608	-	133	45655761	-	LIC20179	-	hypothetical protein
176	 34.32	0	226084..227802	-	572	45655762	-	LIC20180	-	response regulator
177	 35.35	0	228268..229953	-	561	45655763	-	LIC20181	-	GGDEF family protein
178	 35.75	0	230245..231819	-	524	45655764	-	LIC20182	-	GGDEF family protein
179	 32.58	-1	232351..234876	+	841	45655765	-	LIC20183	-	histidine kinase sensor protein
180	 32.05	-1	235359..236060	-	233	45655767	-	LIC20185	-	hypothetical protein
181	 41.42	+1	236103..236510	-	135	45655768	-	LIC20186	-	hypothetical protein
182	 37.01	0	236793..237797	-	334	45655769	-	LIC20187	-	hypothetical protein
183	 38.30	0	238678..240066	-	462	45655770	-	LIC20188	-	sodium/solute symporter family protein
184	 32.80	-1	240473..240844	+	123	45655771	-	LIC20189	-	hypothetical protein
185	 30.04	-1	241108..242565	+	485	45655772	-	LIC20190	-	hypothetical protein
186	 37.81	0	243091..245055	-	654	45655773	-	LIC20191	-	hypothetical protein
187	 39.93	+1	245183..246061	-	292	45655774	-	LIC20192	-	hypothetical protein
188	 40.93	+1	248366..249655	+	429	45655775	-	LIC20195	-	4-hydroxybutyrate CoA transferase
189	 39.11	0	249924..250442	+	172	45655776	-	LIC20196	-	hypothetical protein
36.46	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.