IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.02   STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
857	 24.87	-2	855289..855477	+	62	24213557	-	LA0857	-	hypothetical protein
858	 41.01	+1	855676..856899	+	407	24213558	-	LA0858	-	Fimh-like protein
859	 27.87	-1	856917..857099	-	60	24213559	-	LA0859	-	hypothetical protein
860	 27.08	-1	857765..858004	+	79	24213560	-	LA0860	-	hypothetical protein
861	 37.78	0	857994..858398	+	134	24213561	-	LA0861	-	anti-sigma factor antagonist
862	 42.25	+1	858755..859270	-	171	24213562	-	LA0862	-	thiol peroxidase
863	 38.77	0	859949..861088	+	379	24213563	ilvB1	LA0863	-	acetolactate synthase large subunit
864	 39.67	0	861130..861618	+	162	24213564	ilvA	LA0864	-	acetolactate synthase
865	 31.11	0	861666..861980	+	104	24213565	-	LA0865	-	hypothetical protein
866	 34.77	0	863227..864753	-	508	24213566	-	LA0866	-	hypothetical protein
867	 23.03	-2	864772..864936	+	54	24213567	-	LA0867	-	hypothetical protein
868	 30.67	0	865773..865922	-	49	24213568	-	LA0868	-	hypothetical protein
869	 37.89	0	865933..867423	+	496	24213569	-	LA0869	-	aldehyde dehydrogenase
870	 28.07	-1	867981..868151	-	56	24213570	-	LA0870	-	hypothetical protein
871	 32.41	0	868177..868284	+	35	24213571	-	LA0871	-	hypothetical protein
872	 35.55	0	868300..870966	-	888	24213572	colA	LA0872	-	collagenase
873	 31.84	0	872503..873774	+	423	24213573	-	LA0873	-	leucine-rich repeat-containing protein
874	 30.30	0	873985..874116	-	43	24213574	-	LA0874	-	hypothetical protein
875	 34.12	0	874541..875179	-	212	24213575	-	LA0875	-	hypothetical protein
876	 31.67	0	875403..875522	-	39	24213576	-	LA0877	-	hypothetical protein
877	 33.89	0	875499..876041	+	180	24213577	sigX	LA0876	-	RNA polymerase ECF-type sigma factor
878	 31.53	0	876052..877104	+	350	24213578	dshA	LA0878	-	DshA protein
879	 37.37	0	877278..877748	-	156	24213579	-	LA0879	-	hypothetical protein
880	 28.83	-1	877820..877930	+	36	24213580	-	LA0880	-	hypothetical protein
881	 25.44	-1	878222..878335	-	37	24213581	-	LA0881	-	hypothetical protein
882	 31.62	0	878683..879033	+	116	24213582	-	LA0882	-	hypothetical protein
883	 34.24	0	879087..879527	+	146	24213583	-	LA0883	-	hypothetical protein
884	 37.82	0	880340..881878	-	512	24213584	NuoN	LA0884	-	NADH dehydrogenase I, N subunit
885	 38.25	0	881875..883563	-	562	24213585	NuoM	LA0885	-	NADH dehydrogenase I, M subunit
886	 42.46	+1	883565..885526	-	653	24213586	NuoL	LA0886	-	NADH dehydrogenase I chain L
887	 43.30	+1	885520..885840	-	106	24213587	nuoK	LA0887	-	NADH dehydrogenase I, K subunit
888	 42.31	+1	885837..886538	-	233	24213588	NuoJ	LA0888	-	NADH dehydrogenase I chain J
889	 41.59	+1	886552..887592	-	346	24213589	NuoH	LA0889	-	NADH dehydrogenase I chain H
890	 44.82	+2	887589..888920	-	443	24213590	NuoF	LA0890	-	NADH dehydrogenase I, F subunit
891	 40.79	+1	888936..889418	-	160	24213591	NuoE	LA0891	-	NADH dehydrogenase I chain E
892	 43.02	+1	889415..890632	-	405	24213592	NuoD	LA0892	-	NADH dehydrogenase I, D subunit
893	 35.75	0	890634..891170	-	178	24213593	NuoC	LA0893	-	NADH dehydrogenase I, C subunit
894	 47.06	+2	891167..891727	-	186	24213594	NuoB	LA0894	-	NADH dehydrogenase I chain B
895	 40.23	+1	891718..892152	-	144	24213595	NuoA	LA0895	-	NADH dehydrogenase I, A subunit
896	 31.75	0	892173..892298	+	41	24213596	-	LA0896	-	hypothetical protein
897	 35.71	0	892378..892545	-	55	24213597	-	LA0897	-	hypothetical protein
898	 35.82	0	892717..893118	+	133	24213598	-	LA0898	-	hypothetical protein
899	 42.37	+1	893131..893595	+	154	24213599	-	LA0899	-	MaoC family protein
900	 37.50	0	893626..894081	+	151	24213600	-	LA0900	-	MarR family transcriptional regulator
901	 28.83	-1	894918..895028	+	36	24213601	-	LA0901	-	hypothetical protein
902	 21.62	-2	895059..895169	-	36	24213602	-	LA0902	-	hypothetical protein
903	 35.05	0	895625..897256	+	543	24213603	-	LA0903	-	hypothetical protein
904	 18.70	-2	897731..897853	+	40	24213604	-	LA0904	-	hypothetical protein
905	 35.97	0	897962..898756	+	264	24213605	-	LA0905	-	hypothetical protein
906	 32.14	0	899331..899750	-	139	24213606	-	LA0906	-	hypothetical protein
907	 34.19	0	899922..900038	+	38	24213607	-	LA0907	-	hypothetical protein
908	 33.21	0	900149..900943	-	264	24213608	-	LA0908	-	hypothetical protein
909	 37.36	0	901076..901522	+	148	24213609	mgsA	LA0909	-	methylglyoxal synthase
910	 27.35	-1	902071..902187	-	38	24213610	-	LA0911	-	hypothetical protein
911	 33.33	0	902171..902773	+	200	24213611	-	LA0910	-	hypothetical protein
912	 35.04	0	902770..904767	-	665	24213612	-	LA0912	-	TPR repeat-containing protein
913	 36.34	0	904764..906794	-	676	24213613	-	LA0913	-	NHL repeat-containing protein
914	 27.01	-1	907534..908118	-	194	24213614	-	LA0914	-	hypothetical protein
915	 35.24	0	909020..909961	-	313	24213615	-	LA0915	-	histone deacetylase family protein
916	 32.92	0	910393..911598	+	401	24213616	-	LA0916	-	hypothetical protein
917	 35.48	0	912094..912186	-	30	24213617	-	LA0917	-	hypothetical protein
918	 35.33	0	912698..913498	-	266	24213618	ech2	LA0918	-	enoyl-CoA hydratase
919	 36.93	0	913498..914025	-	175	24213619	-	LA0919	-	hypothetical protein
920	 34.42	0	914659..915945	+	428	24213620	-	LA0920	-	hypothetical protein
921	 35.51	0	916820..916957	-	45	24213621	-	LA0922	-	hypothetical protein
922	 36.73	0	916884..917030	+	48	24213622	-	LA0921	-	hypothetical protein
923	 41.73	+1	917182..917598	-	138	24213623	-	LA0923	-	transposase
924	 37.62	0	917615..917824	-	69	24213624	-	LA0924	-	transposase
925	 36.78	0	917943..918203	-	86	24213625	-	LA0925	-	transposase
926	 37.41	0	918227..918373	-	48	24213626	-	LA0926	-	hypothetical protein
927	 34.46	0	918803..920044	-	413	24213627	-	LA0927	-	hypothetical protein
928	 39.53	0	920748..920876	-	42	24213628	-	LA0928	-	hypothetical protein
929	 33.62	0	920932..921636	-	234	24213629	-	LA0929	-	haloacid dehalogenase-like hydrolase
930	 37.98	0	921642..923039	-	465	24213630	-	LA0930	-	sugar and other transporter
931	 30.56	0	923036..923143	-	35	24213631	-	LA0931	-	hypothetical protein
932	 33.44	0	923278..924216	+	312	24213632	-	LA0932	-	alpha/beta fold family hydrolase/acetyltransferase
933	 23.15	-2	925767..925874	+	35	24213633	-	LA0933	-	hypothetical protein
934	 39.80	0	925932..927848	+	638	24213634	-	LA0934	-	hypothetical protein
935	 33.99	0	929033..930100	-	355	24213635	-	LA0935	-	hypothetical protein
936	 31.33	0	930217..930615	-	132	24213636	-	LA0936	-	hypothetical protein
937	 33.33	0	930617..930850	-	77	24213637	-	LA0937	-	hypothetical protein
938	 36.11	0	931489..932100	-	203	24213638	-	LA0938	-	hypothetical protein
939	 35.38	0	932102..933856	-	584	24213639	-	LA0939	-	hypothetical protein
940	 35.03	0	933847..935025	-	392	24213640	-	LA0940	-	hypothetical protein
941	 42.33	+1	935202..935690	+	162	24213641	-	LA0941	-	hypothetical protein
942	 41.50	+1	935692..937074	+	460	24213642	nusA	LA0942	-	transcription elongation factor NusA
943	 44.31	+1	937088..939730	+	880	24213643	infB	LA0943	-	translation initiation factor IF-2
944	 42.37	+1	939740..940093	+	117	24213644	rbfA1	LA0944	-	ribosome binding factor A
945	 36.99	0	940050..940979	+	309	161484955	truB	LA0945	-	tRNA pseudouridine synthase B
946	 32.58	0	941031..941297	+	88	161484954	rpsO	LA0946	-	30S ribosomal protein S15
947	 39.58	0	941309..943405	+	698	24213647	-	LA0947	-	polynucleotide phosphorylase/polyadenylase
948	 35.82	0	943424..944710	+	428	24213648	-	LA0948	-	zinc protease
949	 33.33	0	944738..944872	+	44	24213649	-	LA0949	-	hypothetical protein
950	 28.75	-1	945479..945718	+	79	24213650	-	LA0950	-	hypothetical protein
951	 29.98	-1	945989..946852	+	287	24213651	-	LA0951	-	hypothetical protein
952	 34.02	0	946804..947532	+	242	24213652	-	LA0952	-	rhomboid family protein
953	 37.41	0	948258..948404	-	48	24213653	-	LA0953	-	hypothetical protein
954	 38.24	0	948414..949739	+	441	24213654	-	LA0954	-	hypothetical protein
955	 31.91	0	949824..949964	-	46	24213655	-	LA0955	-	hypothetical protein
956	 41.09	+1	950162..954658	+	1498	24213656	gltB1	LA0956	-	glutamate synthase [NADPH] large chain precursor
35.02	MEAN

4.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.