IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.02   STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
797	 30.05	-1	806187..806369	+	60	24213497	-	LA0797	-	hypothetical protein
798	 37.76	0	806685..807452	+	255	24213498	-	LA0798	-	hypothetical protein
799	 39.00	0	807572..808012	+	146	24213499	-	LA0799	-	hypothetical protein
800	 40.23	+1	808070..809128	+	352	24213500	pdxA	LA0800	-	pyridoxal phosphate biosynthetic protein pdxA
801	 32.66	0	809172..809615	+	147	24213501	-	LA0801	-	hypothetical protein
802	 37.52	0	809634..810134	+	166	24213502	-	LA0802	-	TPR repeat-containing protein
803	 37.98	0	810795..811181	+	128	24213503	-	LA0803	-	hypothetical protein
804	 27.08	-1	811328..812047	-	239	24213504	-	LA0804	-	hypothetical protein
805	 25.00	-2	812152..812271	-	39	24213505	-	LA0805	-	hypothetical protein
806	 33.89	0	812521..812877	-	118	24213506	-	LA0806	-	thymidylate kinase
807	 30.56	0	813080..813223	+	47	24213507	-	LA0807	-	hypothetical protein
808	 32.85	0	813245..813868	+	207	24213508	-	LA0808	-	hypothetical protein
809	 42.93	+1	814091..815257	+	388	24213509	-	LA0809	-	serine protease DO
810	 39.86	+1	815258..816283	+	341	24213510	ruvB	LA0810	-	Holliday junction DNA helicase B
811	 41.83	+1	816258..817175	+	305	24213511	-	LA0811	-	hypothetical protein
812	 38.42	0	817172..817525	+	117	24213512	-	LA0812	-	hypothetical protein
813	 31.20	0	817522..817989	+	155	24213513	-	LA0813	-	hypothetical protein
814	 34.95	0	818173..818358	-	61	24213514	-	LA0814	-	hypothetical protein
815	 32.30	0	818394..820229	-	611	24213515	-	LA0815	-	sensory transduction histidine kinase
816	 34.90	0	820230..820931	-	233	24213516	-	LA0816	-	two-component response regulator transcriptional regulator protein
817	 34.28	0	821590..822012	-	140	24213517	-	LA0817	-	hypothetical protein
818	 36.41	0	822036..823043	-	335	24213518	-	LA0818	-	hypothetical protein
819	 43.78	+1	823139..823339	+	66	24213519	-	LA0819	-	hypothetical protein
820	 37.31	0	823309..823911	+	200	24213520	-	LA0820	-	hypothetical protein
821	 34.74	0	823908..824474	+	188	24213521	-	LA0821	-	methylase
822	 54.63	+2	824984..825091	-	35	24213522	-	LA0822	-	hypothetical protein
823	 37.50	0	825197..826108	-	303	24213523	-	LA0823	-	alpha/beta hydrolase fold
824	 37.72	0	826224..826724	-	166	24213524	-	LA0824	-	methionine sulfoxide reductase B
825	 38.70	0	826837..827451	-	204	24213525	-	LA0825	-	TetR family transcriptional regulator
826	 36.82	0	827432..827632	-	66	24213526	-	LA0826	-	hypothetical protein
827	 37.86	0	827692..828552	+	286	24213527	-	LA0827	-	hypothetical protein
828	 42.38	+1	828589..829914	+	441	24213528	thiL2	LA0828	-	Acetyl-CoA acetyltransferase
829	 42.68	+1	829998..830489	+	163	24213529	-	LA0829	-	hypothetical protein
830	 32.50	0	830636..830755	+	39	24213530	-	LA0830	-	hypothetical protein
831	 21.48	-2	831426..831560	+	44	24213531	-	LA0831	-	hypothetical protein
832	 36.34	0	831620..832384	+	254	24213532	birA	LA0832	-	biotin--[acetyl-CoA-carboxylase] synthetase
833	 38.11	0	832386..833159	+	257	24213533	-	LA0833	-	pantothenate kinase
834	 34.92	0	833531..833656	-	41	24213534	-	LA0834	-	hypothetical protein
835	 40.24	+1	833787..835682	-	631	24213535	-	LA0835	-	hypothetical protein
836	 23.92	-2	835868..836122	-	84	24213536	-	LA0836	-	hypothetical protein
837	 30.52	0	836687..836935	+	82	24213537	-	LA0837	-	hypothetical protein
838	 34.20	0	837688..839079	-	463	24213538	murD	LA0838	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
839	 35.14	0	839162..839494	+	110	24213539	-	LA0839	-	anti-sigma factor antagonist
840	 39.00	0	839501..840259	+	252	24213540	trpC	LA0840	-	indole-3-glycerol phosphate synthase
841	 38.14	0	841347..842408	+	353	24213541	-	LA0841	-	hypothetical protein
842	 32.63	0	842439..842723	+	94	24213542	-	LA0842	-	hypothetical protein
843	 33.28	0	842693..844474	+	593	24213543	-	LA0843	-	dolichyl-phosphate-mannose-protein mannosyltransferase-family protein
844	 38.74	0	844532..844642	-	36	24213544	-	LA0844	-	hypothetical protein
845	 36.90	0	845520..846416	+	298	24213545	-	LA0845	-	hydroxymethylglutaryl-CoA lyase
846	 32.46	0	846413..847327	+	304	24213546	-	LA0846	-	hypothetical protein
847	 36.35	0	847392..848252	+	286	24213547	-	LA0847	-	hypothetical protein
848	 34.03	0	849059..849202	-	47	24213548	-	LA0849	-	hypothetical protein
849	 39.68	0	849193..849507	+	104	24213549	rplU	LA0848	-	50S ribosomal protein L21
850	 37.92	0	849504..849830	+	108	24213550	-	LA0850	-	hypothetical protein
851	 43.14	+1	849820..850074	+	84	24213551	rpmA	LA0851	-	50S ribosomal protein L27
852	 39.68	0	850189..851259	+	356	24213552	obgE	LA0852	-	GTPase ObgE
853	 38.83	0	851273..852145	+	290	24213553	proB	LA0853	-	gamma-glutamyl kinase
854	 38.37	0	852142..853392	+	416	24213554	proA	LA0854	-	gamma-glutamyl phosphate reductase
855	 30.33	0	853396..853995	+	199	24213555	nadD	LA0855	-	nicotinate-nucleotide adenylyltransferase
856	 27.04	-1	854987..855145	-	52	24213556	-	LA0856	-	hypothetical protein
857	 24.87	-2	855289..855477	+	62	24213557	-	LA0857	-	hypothetical protein
858	 41.01	+1	855676..856899	+	407	24213558	-	LA0858	-	Fimh-like protein
859	 27.87	-1	856917..857099	-	60	24213559	-	LA0859	-	hypothetical protein
860	 27.08	-1	857765..858004	+	79	24213560	-	LA0860	-	hypothetical protein
861	 37.78	0	857994..858398	+	134	24213561	-	LA0861	-	anti-sigma factor antagonist
862	 42.25	+1	858755..859270	-	171	24213562	-	LA0862	-	thiol peroxidase
863	 38.77	0	859949..861088	+	379	24213563	ilvB1	LA0863	-	acetolactate synthase large subunit
864	 39.67	0	861130..861618	+	162	24213564	ilvA	LA0864	-	acetolactate synthase
865	 31.11	0	861666..861980	+	104	24213565	-	LA0865	-	hypothetical protein
866	 34.77	0	863227..864753	-	508	24213566	-	LA0866	-	hypothetical protein
867	 23.03	-2	864772..864936	+	54	24213567	-	LA0867	-	hypothetical protein
868	 30.67	0	865773..865922	-	49	24213568	-	LA0868	-	hypothetical protein
869	 37.89	0	865933..867423	+	496	24213569	-	LA0869	-	aldehyde dehydrogenase
870	 28.07	-1	867981..868151	-	56	24213570	-	LA0870	-	hypothetical protein
871	 32.41	0	868177..868284	+	35	24213571	-	LA0871	-	hypothetical protein
872	 35.55	0	868300..870966	-	888	24213572	colA	LA0872	-	collagenase
873	 31.84	0	872503..873774	+	423	24213573	-	LA0873	-	leucine-rich repeat-containing protein
874	 30.30	0	873985..874116	-	43	24213574	-	LA0874	-	hypothetical protein
875	 34.12	0	874541..875179	-	212	24213575	-	LA0875	-	hypothetical protein
876	 31.67	0	875403..875522	-	39	24213576	-	LA0877	-	hypothetical protein
877	 33.89	0	875499..876041	+	180	24213577	sigX	LA0876	-	RNA polymerase ECF-type sigma factor
878	 31.53	0	876052..877104	+	350	24213578	dshA	LA0878	-	DshA protein
879	 37.37	0	877278..877748	-	156	24213579	-	LA0879	-	hypothetical protein
880	 28.83	-1	877820..877930	+	36	24213580	-	LA0880	-	hypothetical protein
881	 25.44	-1	878222..878335	-	37	24213581	-	LA0881	-	hypothetical protein
882	 31.62	0	878683..879033	+	116	24213582	-	LA0882	-	hypothetical protein
883	 34.24	0	879087..879527	+	146	24213583	-	LA0883	-	hypothetical protein
884	 37.82	0	880340..881878	-	512	24213584	NuoN	LA0884	-	NADH dehydrogenase I, N subunit
885	 38.25	0	881875..883563	-	562	24213585	NuoM	LA0885	-	NADH dehydrogenase I, M subunit
886	 42.46	+1	883565..885526	-	653	24213586	NuoL	LA0886	-	NADH dehydrogenase I chain L
887	 43.30	+1	885520..885840	-	106	24213587	nuoK	LA0887	-	NADH dehydrogenase I, K subunit
888	 42.31	+1	885837..886538	-	233	24213588	NuoJ	LA0888	-	NADH dehydrogenase I chain J
889	 41.59	+1	886552..887592	-	346	24213589	NuoH	LA0889	-	NADH dehydrogenase I chain H
890	 44.82	+2	887589..888920	-	443	24213590	NuoF	LA0890	-	NADH dehydrogenase I, F subunit
891	 40.79	+1	888936..889418	-	160	24213591	NuoE	LA0891	-	NADH dehydrogenase I chain E
892	 43.02	+1	889415..890632	-	405	24213592	NuoD	LA0892	-	NADH dehydrogenase I, D subunit
893	 35.75	0	890634..891170	-	178	24213593	NuoC	LA0893	-	NADH dehydrogenase I, C subunit
894	 47.06	+2	891167..891727	-	186	24213594	NuoB	LA0894	-	NADH dehydrogenase I chain B
895	 40.23	+1	891718..892152	-	144	24213595	NuoA	LA0895	-	NADH dehydrogenase I, A subunit
896	 31.75	0	892173..892298	+	41	24213596	-	LA0896	-	hypothetical protein
35.02	MEAN

4.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.