IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.02   STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
725	 26.67	-1	745162..745266	-	34	24213425	-	LA0725	-	hypothetical protein
726	 33.22	0	745967..748531	+	854	24213426	-	LA0726	-	sulfatase
727	 39.96	+1	748658..751978	+	1106	24213427	carB	LA0727	-	carbamoyl phosphate synthase large subunit
728	 35.33	0	753043..753594	+	183	24213428	-	LA0728	-	hypothetical protein
729	 35.24	0	753971..754075	-	34	24213429	-	LA0729	-	hypothetical protein
730	 32.99	0	754350..755216	+	288	24213430	-	LA0730	-	hypothetical protein
731	 27.65	-1	755750..756013	-	87	24213431	-	LA0732	-	hypothetical protein
732	 25.71	-1	755988..756092	+	34	24213432	-	LA0731	-	hypothetical protein
733	 20.45	-2	756239..756370	-	43	24213433	-	LA0733	-	hypothetical protein
734	 36.78	0	756386..756937	+	183	24213434	-	LA0734	-	hypothetical protein
735	 33.50	0	756942..758168	+	408	24213435	-	LA0735	-	hypothetical protein
736	 40.46	+1	758831..760696	+	621	24213436	fusA2	LA0736	-	elongation factor G
737	 43.62	+1	760747..761952	+	401	24213437	-	LA0737	-	elongation factor Tu
738	 41.10	+1	761967..762275	+	102	24213438	rpsJ	LA0738	-	30S ribosomal protein S10
739	 45.25	+2	762287..762907	+	206	24213439	rplC	LA0739	-	50S ribosomal protein L3
740	 38.99	0	762925..763560	+	211	24213440	rplD	LA0740	-	50S ribosomal protein L4
741	 39.37	0	763557..763871	+	104	24213441	rplW	LA0741	-	50S ribosomal protein L23
742	 44.29	+1	763875..764714	+	279	24213442	rplB	LA0742	-	50S ribosomal protein L2
743	 37.59	0	764723..765004	+	93	24213443	rpsS	LA0743	-	30S ribosomal protein S19
744	 40.84	+1	765004..765336	+	110	24213444	rplV	LA0744	-	50S ribosomal protein L22
745	 39.68	0	765349..766026	+	225	24213445	rpsC	LA0745	-	30S ribosomal protein S3
746	 43.24	+1	766049..766462	+	137	24213446	rplP	LA0746	-	50S ribosomal protein L16
747	 35.44	0	766459..766743	+	94	24213447	rpmC	LA0747	-	50S ribosomal protein L29
748	 36.67	0	766753..767022	+	89	24213448	rpsQ	LA0748	-	30S ribosomal protein S17
749	 42.49	+1	767024..767416	+	130	24213449	rplN	LA0749	-	50S ribosomal protein L14
750	 34.72	0	767416..767775	+	119	24213450	rplX	LA0750	-	50S ribosomal protein L24
751	 40.44	+1	767779..768327	+	182	24213451	rplE	LA0751	-	50S ribosomal protein L5
752	 44.62	+1	768347..768532	+	61	24213452	rpsN	LA0752	-	30S ribosomal protein S14
753	 38.56	0	768552..768953	+	133	24213453	rpsH	LA0753	-	30S ribosomal protein S8
754	 38.52	0	768980..769519	+	179	24213454	rplF	LA0754	-	50S ribosomal protein L6
755	 42.55	+1	769523..769891	+	122	24213455	rplR	LA0755	-	50S ribosomal protein L18
756	 41.76	+1	769854..770399	+	181	24213456	rpsE	LA0756	-	30S ribosomal protein S5
757	 36.67	0	770412..770591	+	59	24213457	rpmD	LA0757	-	50S ribosomal protein L30
758	 41.62	+1	770607..771149	+	180	24213458	rplO	LA0758	-	50S ribosomal protein L15
759	 38.68	0	771164..772546	+	460	24213459	secY	LA0759	-	preprotein translocase subunit SecY
760	 41.13	+1	772554..773117	+	187	24213460	-	LA0760	-	adenylate kinase
761	 42.92	+1	773120..773338	+	72	24213461	infA	LA0761	-	translation initiation factor IF-1
762	 40.21	+1	773464..773841	+	125	24213462	rpsM	LA0762	-	30S ribosomal protein S13
763	 44.53	+1	773844..774254	+	136	24213463	rpsK	LA0763	-	30S ribosomal protein S11
764	 40.54	+1	774266..774889	+	207	24213464	rpsD	LA0764	-	30S ribosomal protein S4
765	 39.98	+1	774912..775889	+	325	24213465	rpoA	LA0765	-	DNA-directed RNA polymerase subunit alpha
766	 33.91	0	775891..776406	+	171	24213466	rplQ	LA0766	-	50S ribosomal protein L17
767	 31.78	0	777130..777258	-	42	24213467	-	LA0767	-	hypothetical protein
768	 26.67	-1	777524..777628	+	34	24213468	-	LA0768	-	hypothetical protein
769	 38.33	0	777688..779607	-	639	24213469	-	LA0769	-	hypothetical protein
770	 21.05	-2	779955..780068	-	37	24213470	-	LA0770	-	hypothetical protein
771	 22.36	-2	780041..780286	-	81	24213471	-	LA0771	-	hypothetical protein
772	 24.11	-2	781512..781652	+	46	24213472	-	LA0772	-	hypothetical protein
773	 33.42	0	781642..782787	-	381	24213473	-	LA0773	-	hypothetical protein
774	 42.75	+1	783555..783692	+	45	24213474	-	LA0774	-	hypothetical protein
775	 36.87	0	784005..785078	+	357	24213475	-	LA0775	-	transposase
776	 40.10	+1	786377..787603	-	408	24213476	-	LA0776	-	L,L-diaminopimelate aminotransferase
777	 37.09	0	787587..787985	-	132	24213477	-	LA0777	-	hypothetical protein
778	 38.32	0	787958..788920	-	320	24213478	pyrB	LA0778	-	aspartate carbamoyltransferase catalytic subunit
779	 30.78	0	788921..790015	-	364	24213479	-	LA0779	-	fatty acid desaturase
780	 40.65	+1	790077..790199	-	40	24213480	-	LA0780	-	hypothetical protein
781	 30.10	-1	790374..790682	-	102	24213481	-	LA0781	-	hypothetical protein
782	 37.07	0	790743..791063	-	106	24213482	-	LA0782	-	hypothetical protein
783	 28.70	-1	791250..791357	+	35	24213483	-	LA0783	-	hypothetical protein
784	 34.49	0	791696..792214	+	172	24213484	-	LA0784	-	hypothetical protein
785	 39.08	0	792615..793658	+	347	24213485	-	LA0785	-	hypothetical protein
786	 36.09	0	793868..794992	-	374	24213486	-	LA0786	-	Lipid-A-disaccharide synthetase(lpxB) like protein
787	 35.09	0	794989..795843	-	284	24213487	-	LA0787	-	SpoU rRNA methylase family protein
788	 38.71	0	795810..796757	-	315	24213488	-	LA0788	-	SAM dependent methyltransferase
789	 33.16	0	796735..798510	-	591	24213489	-	LA0789	-	dihydrofolate reductase
790	 40.31	+1	798393..799682	-	429	24213490	gltA2	LA0790	-	citrate synthase
791	 35.96	0	799794..802043	-	749	24213491	-	LA0791	-	soluble lytic murein transglycosylase precursor
792	 36.23	0	802101..803414	+	437	24213492	-	LA0792	-	hypothetical protein
793	 37.08	0	803742..804275	-	177	24213493	-	LA0793	-	hypothetical protein
794	 33.33	0	804471..805016	+	181	24213494	-	LA0794	-	acetyltransferase
795	 21.93	-2	805138..805251	-	37	24213495	-	LA0796	-	hypothetical protein
796	 30.65	0	805224..805895	+	223	24213496	-	LA0795	-	hypothetical protein
797	 30.05	-1	806187..806369	+	60	24213497	-	LA0797	-	hypothetical protein
798	 37.76	0	806685..807452	+	255	24213498	-	LA0798	-	hypothetical protein
799	 39.00	0	807572..808012	+	146	24213499	-	LA0799	-	hypothetical protein
800	 40.23	+1	808070..809128	+	352	24213500	pdxA	LA0800	-	pyridoxal phosphate biosynthetic protein pdxA
801	 32.66	0	809172..809615	+	147	24213501	-	LA0801	-	hypothetical protein
802	 37.52	0	809634..810134	+	166	24213502	-	LA0802	-	TPR repeat-containing protein
803	 37.98	0	810795..811181	+	128	24213503	-	LA0803	-	hypothetical protein
804	 27.08	-1	811328..812047	-	239	24213504	-	LA0804	-	hypothetical protein
805	 25.00	-2	812152..812271	-	39	24213505	-	LA0805	-	hypothetical protein
806	 33.89	0	812521..812877	-	118	24213506	-	LA0806	-	thymidylate kinase
807	 30.56	0	813080..813223	+	47	24213507	-	LA0807	-	hypothetical protein
808	 32.85	0	813245..813868	+	207	24213508	-	LA0808	-	hypothetical protein
809	 42.93	+1	814091..815257	+	388	24213509	-	LA0809	-	serine protease DO
810	 39.86	+1	815258..816283	+	341	24213510	ruvB	LA0810	-	Holliday junction DNA helicase B
811	 41.83	+1	816258..817175	+	305	24213511	-	LA0811	-	hypothetical protein
812	 38.42	0	817172..817525	+	117	24213512	-	LA0812	-	hypothetical protein
813	 31.20	0	817522..817989	+	155	24213513	-	LA0813	-	hypothetical protein
814	 34.95	0	818173..818358	-	61	24213514	-	LA0814	-	hypothetical protein
815	 32.30	0	818394..820229	-	611	24213515	-	LA0815	-	sensory transduction histidine kinase
816	 34.90	0	820230..820931	-	233	24213516	-	LA0816	-	two-component response regulator transcriptional regulator protein
817	 34.28	0	821590..822012	-	140	24213517	-	LA0817	-	hypothetical protein
818	 36.41	0	822036..823043	-	335	24213518	-	LA0818	-	hypothetical protein
819	 43.78	+1	823139..823339	+	66	24213519	-	LA0819	-	hypothetical protein
820	 37.31	0	823309..823911	+	200	24213520	-	LA0820	-	hypothetical protein
821	 34.74	0	823908..824474	+	188	24213521	-	LA0821	-	methylase
822	 54.63	+2	824984..825091	-	35	24213522	-	LA0822	-	hypothetical protein
823	 37.50	0	825197..826108	-	303	24213523	-	LA0823	-	alpha/beta hydrolase fold
824	 37.72	0	826224..826724	-	166	24213524	-	LA0824	-	methionine sulfoxide reductase B
35.02	MEAN

4.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.