IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.02   STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
672	 34.81	0	673637..673771	+	44	24213372	-	LA0672	-	hypothetical protein
673	 34.64	0	674465..676066	-	533	24213373	spsF	LA0673	-	spore coat polysaccharide biosynthesis protein spsF-like protein
674	 34.69	0	676038..677582	-	514	24213374	-	LA0674	-	hypothetical protein
675	 38.02	0	677632..678720	-	362	24213375	-	LA0675	-	hypothetical protein
676	 37.88	0	678908..680995	-	695	24213376	-	LA0676	-	methyl-accepting chemotaxis protein mcpC
677	 21.97	-2	681052..681183	-	43	24213377	-	LA0677	-	hypothetical protein
678	 38.48	0	681902..683980	-	692	24213378	-	LA0678	-	methyl-accepting chemotaxis protein mcpB
679	 25.00	-2	684345..684452	+	35	24213379	-	LA0679	-	hypothetical protein
680	 36.74	0	684507..684917	+	136	24213380	-	LA0680	-	hypothetical protein
681	 31.29	0	685156..685302	-	48	24213381	-	LA0681	-	hypothetical protein
682	 31.88	0	685813..686019	-	68	24213382	-	LA0682	-	hypothetical protein
683	 38.98	0	686357..686533	-	58	24213383	-	LA0683	-	hypothetical protein
684	 32.55	0	686537..687301	-	254	24213384	-	LA0684	-	hypothetical protein
685	 32.23	0	687555..687827	-	90	24213385	-	LA0685	-	hypothetical protein
686	 39.63	0	688127..689047	-	306	24213386	-	LA0686	-	hypothetical protein
687	 34.56	0	689050..690765	-	571	24213387	-	LA0687	-	hypothetical protein
688	 37.16	0	690762..691466	-	234	24213388	-	LA0688	-	hypothetical protein
689	 32.16	0	691466..692569	-	367	24213389	-	LA0689	-	DNA repair helicase
690	 32.89	0	692570..693703	-	377	24213390	-	LA0690	-	DEAD/DEAH box helicase
691	 26.50	-1	694763..694879	+	38	24213391	-	LA0691	-	hypothetical protein
692	 23.93	-2	695995..696111	+	38	24213392	-	LA0692	-	hypothetical protein
693	 41.87	+1	696201..697418	-	405	24213393	lysC	LA0693	-	aspartate kinase
694	 38.54	0	697599..699404	+	601	24213394	-	LA0694	-	Na+/glucose symporter
695	 36.93	0	700810..701532	+	240	24213395	-	LA0695	-	hypothetical protein
696	 35.14	0	701600..703534	-	644	24213396	-	LA0696	-	hypothetical protein
697	 38.31	0	703542..704666	-	374	24213397	-	LA0697	-	hypothetical protein
698	 16.67	-2	704663..704788	-	41	24213398	-	LA0698	-	hypothetical protein
699	 35.99	0	704819..707116	-	765	24213399	-	LA0699	-	hypothetical protein
700	 39.53	0	707314..708426	-	370	24213400	-	LA0700	-	hypothetical protein
701	 37.15	0	708833..711658	-	941	24213401	-	LA0701	-	leucine-rich repeat-containing protein
702	 36.87	0	711909..712982	+	357	24213402	-	LA0702	-	transposase
703	 36.62	0	712975..715044	-	689	24213403	-	LA0703	-	molybdate metabolism regulator
704	 24.64	-2	715509..715646	-	45	24213404	-	LA0704	-	hypothetical protein
705	 33.33	0	715657..716160	+	167	24213405	-	LA0705	-	leucine-rich repeat-containing protein
706	 35.77	0	717341..720253	+	970	24213406	-	LA0706	-	hypothetical protein
707	 33.88	0	720468..721382	-	304	24213407	-	LA0707	-	hypothetical protein
708	 21.67	-2	721620..721739	+	39	24213408	-	LA0708	-	hypothetical protein
709	 42.99	+1	722546..731971	+	3141	24213409	-	LA0709	-	hypothetical protein
710	 39.46	0	731984..732652	+	222	24213410	-	LA0710	-	hypothetical protein
711	 42.55	+1	732840..733859	+	339	24213411	-	LA0711	-	hypothetical protein
712	 36.59	0	733840..734484	+	214	24213412	-	LA0712	-	lipoprotein
713	 41.47	+1	734684..737362	+	892	24213413	-	LA0713	-	hypothetical protein
714	 40.97	+1	737314..738138	+	274	24213414	-	LA0714	-	hypothetical protein
715	 37.92	0	738344..738910	+	188	24213415	-	LA0715	-	lipoprotein
716	 39.30	0	739314..739715	-	133	24213416	-	LA0716	-	transposase
717	 35.37	0	739777..740070	-	97	24213417	-	LA0717	-	hypothetical protein
718	 32.43	0	740143..740697	+	184	24213418	-	LA0718	-	hypothetical protein
719	 34.78	0	741238..741996	-	252	24213419	-	LA0719	-	hypothetical protein
720	 40.93	+1	742037..742786	+	249	24213420	-	LA0720	-	hypothetical protein
721	 34.29	0	742858..742962	+	34	24213421	-	LA0721	-	hypothetical protein
722	 32.64	0	743674..743817	+	47	24213422	-	LA0722	-	hypothetical protein
723	 37.10	0	743789..744319	+	176	24213423	ruvC	LA0723	-	Holliday junction resolvasome endonuclease subunit
724	 37.84	0	744761..744871	+	36	24213424	-	LA0724	-	hypothetical protein
725	 26.67	-1	745162..745266	-	34	24213425	-	LA0725	-	hypothetical protein
726	 33.22	0	745967..748531	+	854	24213426	-	LA0726	-	sulfatase
727	 39.96	+1	748658..751978	+	1106	24213427	carB	LA0727	-	carbamoyl phosphate synthase large subunit
728	 35.33	0	753043..753594	+	183	24213428	-	LA0728	-	hypothetical protein
729	 35.24	0	753971..754075	-	34	24213429	-	LA0729	-	hypothetical protein
730	 32.99	0	754350..755216	+	288	24213430	-	LA0730	-	hypothetical protein
731	 27.65	-1	755750..756013	-	87	24213431	-	LA0732	-	hypothetical protein
732	 25.71	-1	755988..756092	+	34	24213432	-	LA0731	-	hypothetical protein
733	 20.45	-2	756239..756370	-	43	24213433	-	LA0733	-	hypothetical protein
734	 36.78	0	756386..756937	+	183	24213434	-	LA0734	-	hypothetical protein
735	 33.50	0	756942..758168	+	408	24213435	-	LA0735	-	hypothetical protein
736	 40.46	+1	758831..760696	+	621	24213436	fusA2	LA0736	-	elongation factor G
737	 43.62	+1	760747..761952	+	401	24213437	-	LA0737	-	elongation factor Tu
738	 41.10	+1	761967..762275	+	102	24213438	rpsJ	LA0738	-	30S ribosomal protein S10
739	 45.25	+2	762287..762907	+	206	24213439	rplC	LA0739	-	50S ribosomal protein L3
740	 38.99	0	762925..763560	+	211	24213440	rplD	LA0740	-	50S ribosomal protein L4
741	 39.37	0	763557..763871	+	104	24213441	rplW	LA0741	-	50S ribosomal protein L23
742	 44.29	+1	763875..764714	+	279	24213442	rplB	LA0742	-	50S ribosomal protein L2
743	 37.59	0	764723..765004	+	93	24213443	rpsS	LA0743	-	30S ribosomal protein S19
744	 40.84	+1	765004..765336	+	110	24213444	rplV	LA0744	-	50S ribosomal protein L22
745	 39.68	0	765349..766026	+	225	24213445	rpsC	LA0745	-	30S ribosomal protein S3
746	 43.24	+1	766049..766462	+	137	24213446	rplP	LA0746	-	50S ribosomal protein L16
747	 35.44	0	766459..766743	+	94	24213447	rpmC	LA0747	-	50S ribosomal protein L29
748	 36.67	0	766753..767022	+	89	24213448	rpsQ	LA0748	-	30S ribosomal protein S17
749	 42.49	+1	767024..767416	+	130	24213449	rplN	LA0749	-	50S ribosomal protein L14
750	 34.72	0	767416..767775	+	119	24213450	rplX	LA0750	-	50S ribosomal protein L24
751	 40.44	+1	767779..768327	+	182	24213451	rplE	LA0751	-	50S ribosomal protein L5
752	 44.62	+1	768347..768532	+	61	24213452	rpsN	LA0752	-	30S ribosomal protein S14
753	 38.56	0	768552..768953	+	133	24213453	rpsH	LA0753	-	30S ribosomal protein S8
754	 38.52	0	768980..769519	+	179	24213454	rplF	LA0754	-	50S ribosomal protein L6
755	 42.55	+1	769523..769891	+	122	24213455	rplR	LA0755	-	50S ribosomal protein L18
756	 41.76	+1	769854..770399	+	181	24213456	rpsE	LA0756	-	30S ribosomal protein S5
757	 36.67	0	770412..770591	+	59	24213457	rpmD	LA0757	-	50S ribosomal protein L30
758	 41.62	+1	770607..771149	+	180	24213458	rplO	LA0758	-	50S ribosomal protein L15
759	 38.68	0	771164..772546	+	460	24213459	secY	LA0759	-	preprotein translocase subunit SecY
760	 41.13	+1	772554..773117	+	187	24213460	-	LA0760	-	adenylate kinase
761	 42.92	+1	773120..773338	+	72	24213461	infA	LA0761	-	translation initiation factor IF-1
762	 40.21	+1	773464..773841	+	125	24213462	rpsM	LA0762	-	30S ribosomal protein S13
763	 44.53	+1	773844..774254	+	136	24213463	rpsK	LA0763	-	30S ribosomal protein S11
764	 40.54	+1	774266..774889	+	207	24213464	rpsD	LA0764	-	30S ribosomal protein S4
765	 39.98	+1	774912..775889	+	325	24213465	rpoA	LA0765	-	DNA-directed RNA polymerase subunit alpha
766	 33.91	0	775891..776406	+	171	24213466	rplQ	LA0766	-	50S ribosomal protein L17
767	 31.78	0	777130..777258	-	42	24213467	-	LA0767	-	hypothetical protein
768	 26.67	-1	777524..777628	+	34	24213468	-	LA0768	-	hypothetical protein
769	 38.33	0	777688..779607	-	639	24213469	-	LA0769	-	hypothetical protein
770	 21.05	-2	779955..780068	-	37	24213470	-	LA0770	-	hypothetical protein
771	 22.36	-2	780041..780286	-	81	24213471	-	LA0771	-	hypothetical protein
35.02	MEAN

4.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.