IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
561	 36.78	0	561278..562351	+	357	24213261	-	LA0561	-	transposase
562	 28.16	-1	562637..563119	+	160	24213262	-	LA0562	-	hypothetical protein
563	 38.66	0	563305..564693	-	462	24213263	-	LA0563	-	hypothetical protein
564	 32.15	0	564940..565446	+	168	24213264	-	LA0564	-	hypothetical protein
565	 38.31	0	565819..567063	-	414	24213265	cyaA3	LA0565	-	adenylate cyclase
566	 38.55	0	567852..569441	+	529	24213266	-	LA0566	-	short-chain dehydrogenase
567	 36.96	0	570261..570398	+	45	24213267	-	LA0567	-	hypothetical protein
568	 39.73	0	570430..571851	-	473	24213268	-	LA0568	-	hypothetical protein
569	 39.75	0	572120..574348	+	742	24213269	-	LA0569	-	hypothetical protein
570	 35.97	0	574385..575257	+	290	24213270	-	LA0570	-	hypothetical protein
571	 33.83	0	575264..576472	+	402	24213271	-	LA0571	-	hypothetical protein
572	 35.79	0	576485..579010	+	841	24213272	-	LA0572	-	hypothetical protein
573	 31.92	0	579117..579470	+	117	24213273	-	LA0573	-	hypothetical protein
574	 35.50	0	579723..580367	+	214	24213274	-	LA0574	-	dedA protein
575	 38.00	0	580408..581415	+	335	24213275	-	LA0575	-	hypothetical protein
576	 33.60	0	581690..582829	-	379	24213276	-	LA0576	-	hypothetical protein
577	 31.11	0	583195..583329	+	44	24213277	-	LA0577	-	hypothetical protein
578	 33.56	0	583552..584001	+	149	24213278	-	LA0578	-	hypothetical protein
579	 36.04	0	584016..586268	+	750	24213279	icfA	LA0579	-	carbonic anhydrase
580	 35.98	0	586865..587242	+	125	24213280	-	LA0580	-	hypothetical protein
581	 30.95	0	587261..587386	-	41	24213281	-	LA0582	-	hypothetical protein
582	 33.62	0	587366..588745	+	459	24213282	-	LA0581	-	outer membrane efflux protein
583	 37.41	0	588711..591827	+	1038	24213283	czcA1	LA0583	-	cation efflux system protein CZCA
584	 45.45	+2	592285..592482	-	65	24213284	-	LA0584	-	hypothetical protein
585	 36.87	0	592733..593806	+	357	24213285	-	LA0585	-	transposase
586	 35.90	0	593854..594009	+	51	24213286	-	LA0586	-	hypothetical protein
587	 41.15	+1	594298..595218	-	306	24213287	-	LA0587	-	lactonizing lipase
588	 22.75	-2	596721..596975	+	84	24213288	-	LA0588	-	hypothetical protein
589	 40.49	+1	597157..599055	+	632	24213289	-	LA0589	-	hypothetical protein
590	 21.28	-2	599269..599409	+	46	24213290	-	LA0590	-	hypothetical protein
591	 40.23	+1	599720..600661	+	313	24213291	-	LA0591	-	hypothetical protein
592	 32.31	0	601034..601327	+	97	24213292	-	LA0592	-	hypothetical protein
593	 34.33	0	601345..601545	+	66	24213293	-	LA0593	-	heavy-metal-associated protein
594	 37.07	0	601542..603761	+	739	24213294	atc	LA0594	-	copper-transporting ATPase
595	 33.33	0	604457..605083	-	208	24213295	-	LA0595	-	glutathione S-transferase 1
596	 29.17	-1	605055..605198	-	47	24213296	-	LA0596	-	hypothetical protein
597	 32.43	0	605673..605783	+	36	24213297	-	LA0597	-	hypothetical protein
598	 34.38	0	605977..606456	-	159	24213298	-	LA0598	-	transcription regulator
599	 38.84	0	606676..607401	+	241	24213299	-	LA0599	-	two-component response regulator
600	 33.67	0	607461..608054	-	197	24213300	-	LA0600	-	peptide methionine sulfoxide reductase
601	 25.61	-1	608546..608791	+	81	24213301	-	LA0601	-	hypothetical protein
602	 37.63	0	608788..610044	+	418	24213302	-	LA0602	-	lipoprotein
603	 35.13	0	610041..610874	-	277	24213303	-	LA0603	-	Met(adenosyl) methyltransferase-like protein
604	 36.30	0	611654..611788	-	44	24213304	-	LA0604	-	hypothetical protein
605	 39.22	0	611802..612260	+	152	24213305	-	LA0605	-	SET family protein
606	 38.60	0	612278..612904	-	208	24213306	-	LA0606	-	hypothetical protein
607	 37.83	0	612936..613736	-	266	24213307	-	LA0607	-	hypothetical protein
608	 32.37	0	613990..614196	-	68	24213308	-	LA0609	-	hypothetical protein
609	 34.09	0	614183..614314	+	43	24213309	-	LA0608	-	hypothetical protein
610	 38.53	0	614420..615169	+	249	24213310	-	LA0610	-	hypothetical protein
611	 43.33	+1	615171..616400	+	409	24213311	ftsA1	LA0611	-	cell division protein ftsA
612	 41.65	+1	616419..617621	+	400	24213312	ftsZ	LA0612	-	cell division protein FtsZ
613	 34.67	0	617742..617891	-	49	24213313	-	LA0614	-	hypothetical protein
614	 32.67	0	617830..617979	+	49	24213314	-	LA0613	-	hypothetical protein
615	 33.07	0	619238..619621	-	127	24213315	-	LA0615	-	hypothetical protein
616	 38.13	0	619599..620723	-	374	24213316	lipL41	LA0616	-	outer membrane lipoprotein lipL41
617	 32.98	0	620781..621350	+	189	24213317	-	LA0617	-	hypothetical protein
618	 37.99	0	621335..622321	+	328	24213318	nadA	LA0618	-	quinolinate synthetase
619	 21.62	-2	623461..623571	+	36	24213319	-	LA0619	-	hypothetical protein
620	 39.18	0	623573..625486	-	637	24213320	-	LA0620	-	hypothetical protein
621	 25.38	-1	625811..626074	-	87	24213321	-	LA0621	-	hypothetical protein
622	 25.20	-2	627022..627144	+	40	24213322	-	LA0622	-	hypothetical protein
623	 31.48	0	627482..627589	-	35	24213323	-	LA0624	-	hypothetical protein
624	 38.89	0	627584..627745	+	53	24213324	-	LA0623	-	hypothetical protein
625	 36.66	0	627888..629783	+	631	24213325	recQ1	LA0625	-	DNA helicase RecQ
626	 51.70	+2	630162..630308	-	48	24213326	-	LA0626	-	hypothetical protein
627	 37.72	0	631011..632561	+	516	24213327	-	LA0627	-	glycosyl transferase
628	 28.17	-1	632887..633099	-	70	24213328	-	LA0628	-	hypothetical protein
629	 37.23	0	633584..633865	+	93	24213329	-	LA0629	-	hypothetical protein
630	 35.67	0	634049..635032	+	327	24213330	-	LA0630	-	ferredoxin
631	 34.46	0	635025..635909	+	294	24213331	-	LA0631	-	hypothetical protein
632	 35.82	0	635989..636471	+	160	24213332	ptsN	LA0632	-	nitrogen regulatory IIA protein
633	 34.45	0	636474..637367	+	297	24213333	-	LA0633	-	peptide transporter permease
634	 38.71	0	637364..638125	+	253	24213334	-	LA0634	-	dipeptide/oligopeptide/nickel transport systems, permease components
635	 36.43	0	638122..639705	+	527	24213335	slpM	LA0635	-	S-layer-like array protein
636	 36.78	0	640696..641769	-	357	24213336	-	LA0636	-	transposase
637	 32.48	0	643415..644707	-	430	24213337	folC	LA0637	-	FolC bifunctional protein
638	 34.29	0	644704..645645	-	313	24213338	aroE	LA0638	-	shikimate 5-dehydrogenase
639	 39.55	0	645753..646154	+	133	24213339	-	LA0639	-	hypothetical protein
640	 30.63	0	646901..647566	+	221	24213340	-	LA0640	-	hypothetical protein
641	 36.36	0	647563..647727	+	54	24213341	-	LA0641	-	hypothetical protein
642	 23.40	-2	648171..648311	-	46	24213342	-	LA0642	-	hypothetical protein
643	 35.70	0	648345..649106	-	253	24213343	-	LA0643	-	glycosyl transferase
644	 36.85	0	649107..649874	-	255	24213344	-	LA0645	-	hypothetical protein
645	 36.94	0	649801..651243	+	480	24213345	-	LA0644	-	hypothetical protein
646	 36.54	0	651240..652394	+	384	24213346	rpsA1	LA0646	-	ribosomal protein S1
647	 38.10	0	652399..652860	+	153	24213347	-	LA0647	-	rRNA methylase
648	 34.83	0	652906..653574	+	222	24213348	-	LA0648	-	hypothetical protein
649	 39.23	0	653581..655581	+	666	24213349	uvrB	LA0649	-	excinuclease ABC subunit B
650	 37.19	0	655596..656192	+	198	24213350	-	LA0650	-	rhomboid family protein
651	 39.05	0	657296..657400	-	34	24213351	-	LA0651	-	hypothetical protein
652	 44.44	+1	657413..657556	-	47	24213352	-	LA0652	-	hypothetical protein
653	 35.28	0	657711..658121	-	136	24213353	-	LA0653	-	anti-sigma factor antagonist
654	 36.13	0	658151..658864	+	237	24213354	-	LA0654	-	hypothetical protein
655	 34.99	0	658874..659599	+	241	24213355	dnaJ2	LA0655	-	molecular chaperones dnaJ
656	 37.87	0	659605..660597	+	330	24213356	manA	LA0656	-	mannose-6-phosphate isomerase
657	 36.11	0	660607..660894	+	95	24213357	-	LA0657	-	HNH family endonuclease
658	 34.19	0	661049..661165	+	38	24213358	-	LA0658	-	hypothetical protein
659	 35.71	0	661917..662252	+	111	24213359	-	LA0659	-	hypothetical protein
660	 29.46	-1	662249..662377	+	42	24213360	-	LA0660	-	hypothetical protein
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.