IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
484	 33.23	0	477404..478360	+	318	24213184	-	LA0484	-	hypothetical protein
485	 26.85	-1	479075..479182	+	35	24213185	-	LA0485	-	hypothetical protein
486	 26.09	-1	479216..479353	-	45	24213186	-	LA0486	-	hypothetical protein
487	 28.16	-1	479750..479923	+	57	24213187	-	LA0487	-	hypothetical protein
488	 33.41	0	479892..481193	-	433	24213188	pcrA1	LA0488	-	ATP-dependent DNA helicase pcrA
489	 36.87	0	481684..482757	-	357	24213189	-	LA0489	-	transposase
490	 42.59	+1	483008..483115	+	35	24213190	-	LA0490	-	hypothetical protein
491	 25.17	-2	483351..483497	+	48	24213191	-	LA0491	-	hypothetical protein
492	 40.05	+1	484261..485361	+	366	24213192	lipL36	LA0492	-	lipL36 protein
493	 50.00	+2	486371..486484	+	37	24213193	-	LA0493	-	hypothetical protein
494	 36.06	0	486687..487382	-	231	24213194	-	LA0494	-	hypothetical protein
495	 31.55	0	489009..489401	+	130	24213195	-	LA0495	-	hypothetical protein
496	 36.97	0	489931..490287	+	118	24213196	-	LA0496	-	hypothetical protein
497	 23.21	-2	490695..490862	-	55	24213197	-	LA0497	-	hypothetical protein
498	 37.95	0	490959..491630	-	223	24213198	motB1	LA0498	-	chemotaxis motB protein
499	 31.91	0	491620..491760	-	46	24213199	-	LA0499	-	hypothetical protein
500	 32.74	0	491761..492438	+	225	24213200	-	LA0500	-	hypothetical protein
501	 30.59	0	492599..492817	-	72	24213201	-	LA0501	-	hypothetical protein
502	 35.15	0	493227..494324	+	365	24213202	desA	LA0502	-	Fatty acid desaturase
503	 36.07	0	495409..496503	-	364	24213203	dinP	LA0503	-	DNA damage-inducible protein
504	 32.54	0	496525..497280	-	251	24213204	comF	LA0504	-	late competence protein comFC-like protein
505	 40.96	+1	497374..498474	-	366	24213205	-	LA0505	-	glycosyl hydrolase
506	 33.92	0	498559..499236	+	225	24213206	-	LA0506	-	hypothetical protein
507	 26.83	-1	499246..499368	-	40	24213207	-	LA0507	-	hypothetical protein
508	 30.61	0	499825..499971	-	48	24213208	-	LA0508	-	hypothetical protein
509	 44.24	+1	500337..500831	+	164	24213209	-	LA0509	-	hypothetical protein
510	 23.91	-2	501209..501346	-	45	24213210	-	LA0510	-	hypothetical protein
511	 31.31	0	501538..501834	+	98	24213211	-	LA0511	-	transcriptional regulator
512	 24.04	-2	502279..502461	-	60	24213212	-	LA0513	-	hypothetical protein
513	 39.00	0	502451..503473	+	340	24213213	lpxD1	LA0512	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
514	 36.70	0	504378..505268	+	296	24213214	-	LA0514	-	hypothetical protein
515	 38.58	0	505532..506770	+	412	24213215	-	LA0515	-	pyridine nucleotide-disulphide oxidoreductase
516	 29.73	-1	506907..507017	-	36	24213216	-	LA0516	-	hypothetical protein
517	 34.52	0	507005..507340	-	111	24213217	-	LA0517	-	hypothetical protein
518	 33.33	0	507337..507615	-	92	24213218	-	LA0518	-	hypothetical protein
519	 30.48	0	507748..507852	+	34	24213219	-	LA0519	-	hypothetical protein
520	 38.51	0	508318..508761	-	147	24213220	-	LA0520	-	hypothetical protein
521	 26.67	-1	508825..508944	-	39	24213221	-	LA0521	-	hypothetical protein
522	 37.11	0	509194..509643	-	149	24213222	-	LA0522	-	MarR family transcriptional regulator
523	 33.99	0	509738..510964	+	408	24213223	-	LA0523	-	hypothetical protein
524	 34.21	0	511781..513262	+	493	24213224	lat1	LA0524	-	amino acid transporter
525	 30.99	0	513286..513669	+	127	24213225	-	LA0525	-	hypothetical protein
526	 30.72	0	514941..515093	+	50	24213226	-	LA0526	-	hypothetical protein
527	 34.57	0	519055..519297	-	80	24213227	-	LA0528	-	hypothetical protein
528	 33.33	0	519278..519433	+	51	24213228	-	LA0527	-	hypothetical protein
529	 22.01	-2	519686..519844	+	52	24213229	-	LA0529	-	hypothetical protein
530	 34.43	0	520226..521506	-	426	24213230	-	LA0530	-	hypothetical protein
531	 27.62	-1	522206..522310	+	34	24213231	-	LA0531	-	hypothetical protein
532	 30.44	0	523242..524141	+	299	24213232	-	LA0532	-	hypothetical protein
533	 35.77	0	525038..526147	+	369	24213233	-	LA0533	-	DegT/DnrJ/EryC2/StrS family protein
534	 35.03	0	527414..528004	+	196	24213234	-	LA0534	-	hypothetical protein
535	 33.65	0	528555..529508	-	317	24213235	-	LA0535	-	hypothetical protein
536	 32.94	0	529556..530575	+	339	24213236	-	LA0536	-	hypothetical protein
537	 33.91	0	531188..531877	-	229	24213237	-	LA0537	-	haloacid dehalogenase-like hydrolase
538	 40.14	+1	531977..532681	+	234	24213238	-	LA0538	-	ThiJ/PfpI family protein
539	 27.67	-1	532671..532829	-	52	24213239	-	LA0539	-	hypothetical protein
540	 28.47	-1	533806..534237	-	143	24213240	-	LA0540	-	hypothetical protein
541	 33.06	0	534342..534710	-	122	24213241	-	LA0541	-	hypothetical protein
542	 29.91	-1	534716..534832	+	38	24213242	-	LA0542	-	hypothetical protein
543	 35.07	0	535017..536339	-	440	24213243	-	LA0543	-	hypothetical protein
544	 33.33	0	536808..537983	-	391	24213244	-	LA0544	-	hypothetical protein
545	 26.13	-1	537996..538106	-	36	24213245	-	LA0545	-	hypothetical protein
546	 38.84	0	538108..540633	+	841	24213246	-	LA0546	-	hypothetical protein
547	 37.99	0	541191..541877	-	228	24213247	-	LA0547	-	hypothetical protein
548	 35.91	0	542037..542501	+	154	24213248	-	LA0548	-	hypothetical protein
549	 34.66	0	542501..543028	+	175	24213249	-	LA0549	-	hypothetical protein
550	 40.43	+1	544692..548003	+	1103	24213250	-	LA0550	-	NolG efflux transporter
551	 37.06	0	549062..549625	+	187	24213251	hisI	LA0551	-	phosphoribosyl-AMP cyclohydrolase
552	 36.18	0	549674..550690	+	338	24213252	-	LA0552	-	hypothetical protein
553	 36.51	0	551323..551448	+	41	24213253	-	LA0553	-	hypothetical protein
554	 32.95	0	551866..552123	+	85	24213254	-	LA0554	-	hypothetical protein
555	 32.28	0	552354..552542	+	62	24213255	-	LA0555	-	hypothetical protein
556	 30.32	0	552594..553157	-	187	24213256	-	LA0556	-	hypothetical protein
557	 32.46	0	553226..555616	-	796	24213257	-	LA0557	-	NADH dehydrogenase subunit 2
558	 35.06	0	556101..556853	+	250	24213258	-	LA0558	-	lipoprotein
559	 41.38	+1	557074..558129	-	351	24213259	-	LA0559	-	hypothetical protein
560	 42.89	+1	558482..560155	+	557	24213260	-	LA0560	-	Acyl-CoA dehydrogenase
561	 36.78	0	561278..562351	+	357	24213261	-	LA0561	-	transposase
562	 28.16	-1	562637..563119	+	160	24213262	-	LA0562	-	hypothetical protein
563	 38.66	0	563305..564693	-	462	24213263	-	LA0563	-	hypothetical protein
564	 32.15	0	564940..565446	+	168	24213264	-	LA0564	-	hypothetical protein
565	 38.31	0	565819..567063	-	414	24213265	cyaA3	LA0565	-	adenylate cyclase
566	 38.55	0	567852..569441	+	529	24213266	-	LA0566	-	short-chain dehydrogenase
567	 36.96	0	570261..570398	+	45	24213267	-	LA0567	-	hypothetical protein
568	 39.73	0	570430..571851	-	473	24213268	-	LA0568	-	hypothetical protein
569	 39.75	0	572120..574348	+	742	24213269	-	LA0569	-	hypothetical protein
570	 35.97	0	574385..575257	+	290	24213270	-	LA0570	-	hypothetical protein
571	 33.83	0	575264..576472	+	402	24213271	-	LA0571	-	hypothetical protein
572	 35.79	0	576485..579010	+	841	24213272	-	LA0572	-	hypothetical protein
573	 31.92	0	579117..579470	+	117	24213273	-	LA0573	-	hypothetical protein
574	 35.50	0	579723..580367	+	214	24213274	-	LA0574	-	dedA protein
575	 38.00	0	580408..581415	+	335	24213275	-	LA0575	-	hypothetical protein
576	 33.60	0	581690..582829	-	379	24213276	-	LA0576	-	hypothetical protein
577	 31.11	0	583195..583329	+	44	24213277	-	LA0577	-	hypothetical protein
578	 33.56	0	583552..584001	+	149	24213278	-	LA0578	-	hypothetical protein
579	 36.04	0	584016..586268	+	750	24213279	icfA	LA0579	-	carbonic anhydrase
580	 35.98	0	586865..587242	+	125	24213280	-	LA0580	-	hypothetical protein
581	 30.95	0	587261..587386	-	41	24213281	-	LA0582	-	hypothetical protein
582	 33.62	0	587366..588745	+	459	24213282	-	LA0581	-	outer membrane efflux protein
583	 37.41	0	588711..591827	+	1038	24213283	czcA1	LA0583	-	cation efflux system protein CZCA
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.