IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
439	 39.06	0	436339..437997	-	552	24213139	pmgI	LA0439	-	phosphoglyceromutase
440	 30.00	-1	438260..438379	+	39	24213140	-	LA0440	-	hypothetical protein
441	 33.83	0	438376..440394	+	672	24213141	-	LA0441	-	hypothetical protein
442	 36.46	0	441059..441922	-	287	24213142	-	LA0442	-	hypothetical protein
443	 31.33	0	442005..442553	+	182	24213143	-	LA0443	-	RNA polymerase ECF-type sigma factor
444	 35.37	0	442683..443762	+	359	24213144	-	LA0444	-	hypothetical protein
445	 28.95	-1	444965..445078	+	37	24213145	-	LA0445	-	hypothetical protein
446	 40.65	+1	445240..445704	-	154	24213146	-	LA0446	-	hypothetical protein
447	 33.33	0	447001..447171	+	56	24213147	-	LA0447	-	hypothetical protein
448	 35.96	0	447243..449183	+	646	24213148	-	LA0448	-	ABC transporter, ATP-binding protein
449	 37.72	0	449681..450022	+	113	24213149	-	LA0449	-	rhodanese-like protein
450	 32.14	0	450507..451343	+	278	24213150	-	LA0450	-	hypothetical protein
451	 36.87	0	452072..453145	-	357	24213151	-	LA0451	-	transposase
452	 37.44	0	453648..453842	-	64	24213152	-	LA0452	-	hypothetical protein
453	 44.65	+1	453980..454138	+	52	24213153	-	LA0453	-	hypothetical protein
454	 26.88	-1	454253..454438	+	61	24213154	-	LA0454	-	hypothetical protein
455	 38.07	0	454664..455275	-	203	24213155	-	LA0455	-	TetR family transcriptional regulator
456	 34.69	0	455600..455746	+	48	24213156	-	LA0456	-	hypothetical protein
457	 44.67	+1	456145..457326	+	393	24213157	thiL1	LA0457	-	acetyl-CoA acetyltransferase
458	 31.26	0	457437..457871	+	144	24213158	-	LA0458	-	hypothetical protein
459	 36.32	0	457968..459305	-	445	24213159	amiB1	LA0459	-	N-acetylmuramoyl-L-alanine amidase
460	 33.33	0	459302..459883	-	193	24213160	-	LA0460	-	hypothetical protein
461	 31.48	0	459994..460155	+	53	24213161	-	LA0461	-	hypothetical protein
462	 39.16	0	460361..461167	-	268	24213162	-	LA0462	-	hypothetical protein
463	 45.61	+2	461277..461732	+	151	24213163	ribH	LA0463	-	riboflavin synthase beta chain
464	 37.65	0	461733..462149	+	138	24213164	nusB	LA0464	-	transcription antitermination protein NusB
465	 39.72	0	462142..464208	+	688	24213165	-	LA0465	-	TPR repeat-containing protein
466	 36.67	0	464229..465545	+	438	24213166	-	LA0466	-	PBS lyase HEAT-like protein
467	 30.88	0	466137..466991	-	284	24213167	-	LA0467	-	hypothetical protein
468	 35.29	0	467352..467453	+	33	24213168	-	LA0468	-	hypothetical protein
469	 39.94	+1	468252..469538	+	428	24213169	leuA2	LA0469	-	alpha-isopropylmalate synthase
470	 37.10	0	469546..469731	-	61	24213170	-	LA0470	-	hypothetical protein
471	 35.65	0	469977..470450	-	157	24213171	-	LA0471	-	PBS lyase HEAT-like protein
472	 26.02	-1	470627..470749	-	40	24213172	-	LA0472	-	hypothetical protein
473	 32.32	0	470998..471195	+	65	24213173	-	LA0473	-	hypothetical protein
474	 35.40	0	471212..472372	+	386	24213174	-	LA0474	-	hypothetical protein
475	 32.56	0	472841..472969	-	42	24213175	-	LA0475	-	hypothetical protein
476	 31.15	0	473250..473432	+	60	24213176	-	LA0476	-	hypothetical protein
477	 37.41	0	473474..474895	+	473	24213177	-	LA0477	-	alcohol dehydrogenase
478	 34.77	0	475443..475859	-	138	24213178	-	LA0478	-	hypothetical protein
479	 33.01	0	475906..476211	+	101	24213179	-	LA0479	-	hypothetical protein
480	 36.99	0	476297..476515	+	72	24213180	-	LA0480	-	hypothetical protein
481	 40.13	+1	476631..476939	+	102	24213181	-	LA0481	-	hypothetical protein
482	 36.57	0	476987..477202	-	71	24213182	-	LA0482	-	hypothetical protein
483	 35.06	0	477129..477359	-	76	24213183	-	LA0483	-	hypothetical protein
484	 33.23	0	477404..478360	+	318	24213184	-	LA0484	-	hypothetical protein
485	 26.85	-1	479075..479182	+	35	24213185	-	LA0485	-	hypothetical protein
486	 26.09	-1	479216..479353	-	45	24213186	-	LA0486	-	hypothetical protein
487	 28.16	-1	479750..479923	+	57	24213187	-	LA0487	-	hypothetical protein
488	 33.41	0	479892..481193	-	433	24213188	pcrA1	LA0488	-	ATP-dependent DNA helicase pcrA
489	 36.87	0	481684..482757	-	357	24213189	-	LA0489	-	transposase
490	 42.59	+1	483008..483115	+	35	24213190	-	LA0490	-	hypothetical protein
491	 25.17	-2	483351..483497	+	48	24213191	-	LA0491	-	hypothetical protein
492	 40.05	+1	484261..485361	+	366	24213192	lipL36	LA0492	-	lipL36 protein
493	 50.00	+2	486371..486484	+	37	24213193	-	LA0493	-	hypothetical protein
494	 36.06	0	486687..487382	-	231	24213194	-	LA0494	-	hypothetical protein
495	 31.55	0	489009..489401	+	130	24213195	-	LA0495	-	hypothetical protein
496	 36.97	0	489931..490287	+	118	24213196	-	LA0496	-	hypothetical protein
497	 23.21	-2	490695..490862	-	55	24213197	-	LA0497	-	hypothetical protein
498	 37.95	0	490959..491630	-	223	24213198	motB1	LA0498	-	chemotaxis motB protein
499	 31.91	0	491620..491760	-	46	24213199	-	LA0499	-	hypothetical protein
500	 32.74	0	491761..492438	+	225	24213200	-	LA0500	-	hypothetical protein
501	 30.59	0	492599..492817	-	72	24213201	-	LA0501	-	hypothetical protein
502	 35.15	0	493227..494324	+	365	24213202	desA	LA0502	-	Fatty acid desaturase
503	 36.07	0	495409..496503	-	364	24213203	dinP	LA0503	-	DNA damage-inducible protein
504	 32.54	0	496525..497280	-	251	24213204	comF	LA0504	-	late competence protein comFC-like protein
505	 40.96	+1	497374..498474	-	366	24213205	-	LA0505	-	glycosyl hydrolase
506	 33.92	0	498559..499236	+	225	24213206	-	LA0506	-	hypothetical protein
507	 26.83	-1	499246..499368	-	40	24213207	-	LA0507	-	hypothetical protein
508	 30.61	0	499825..499971	-	48	24213208	-	LA0508	-	hypothetical protein
509	 44.24	+1	500337..500831	+	164	24213209	-	LA0509	-	hypothetical protein
510	 23.91	-2	501209..501346	-	45	24213210	-	LA0510	-	hypothetical protein
511	 31.31	0	501538..501834	+	98	24213211	-	LA0511	-	transcriptional regulator
512	 24.04	-2	502279..502461	-	60	24213212	-	LA0513	-	hypothetical protein
513	 39.00	0	502451..503473	+	340	24213213	lpxD1	LA0512	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
514	 36.70	0	504378..505268	+	296	24213214	-	LA0514	-	hypothetical protein
515	 38.58	0	505532..506770	+	412	24213215	-	LA0515	-	pyridine nucleotide-disulphide oxidoreductase
516	 29.73	-1	506907..507017	-	36	24213216	-	LA0516	-	hypothetical protein
517	 34.52	0	507005..507340	-	111	24213217	-	LA0517	-	hypothetical protein
518	 33.33	0	507337..507615	-	92	24213218	-	LA0518	-	hypothetical protein
519	 30.48	0	507748..507852	+	34	24213219	-	LA0519	-	hypothetical protein
520	 38.51	0	508318..508761	-	147	24213220	-	LA0520	-	hypothetical protein
521	 26.67	-1	508825..508944	-	39	24213221	-	LA0521	-	hypothetical protein
522	 37.11	0	509194..509643	-	149	24213222	-	LA0522	-	MarR family transcriptional regulator
523	 33.99	0	509738..510964	+	408	24213223	-	LA0523	-	hypothetical protein
524	 34.21	0	511781..513262	+	493	24213224	lat1	LA0524	-	amino acid transporter
525	 30.99	0	513286..513669	+	127	24213225	-	LA0525	-	hypothetical protein
526	 30.72	0	514941..515093	+	50	24213226	-	LA0526	-	hypothetical protein
527	 34.57	0	519055..519297	-	80	24213227	-	LA0528	-	hypothetical protein
528	 33.33	0	519278..519433	+	51	24213228	-	LA0527	-	hypothetical protein
529	 22.01	-2	519686..519844	+	52	24213229	-	LA0529	-	hypothetical protein
530	 34.43	0	520226..521506	-	426	24213230	-	LA0530	-	hypothetical protein
531	 27.62	-1	522206..522310	+	34	24213231	-	LA0531	-	hypothetical protein
532	 30.44	0	523242..524141	+	299	24213232	-	LA0532	-	hypothetical protein
533	 35.77	0	525038..526147	+	369	24213233	-	LA0533	-	DegT/DnrJ/EryC2/StrS family protein
534	 35.03	0	527414..528004	+	196	24213234	-	LA0534	-	hypothetical protein
535	 33.65	0	528555..529508	-	317	24213235	-	LA0535	-	hypothetical protein
536	 32.94	0	529556..530575	+	339	24213236	-	LA0536	-	hypothetical protein
537	 33.91	0	531188..531877	-	229	24213237	-	LA0537	-	haloacid dehalogenase-like hydrolase
538	 40.14	+1	531977..532681	+	234	24213238	-	LA0538	-	ThiJ/PfpI family protein
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.