IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.02   STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
384	 32.69	0	377189..378577	-	462	24213084	-	LA0384	-	colanic biosynthesis UDP-glucose lipid carrier transferase
385	 37.27	0	378656..379417	+	253	24213085	-	LA0385	-	two-component response regulator
386	 30.64	0	379371..381596	+	741	24213086	-	LA0386	-	hypothetical protein
387	 36.84	0	381599..382225	+	208	24213087	-	LA0387	-	hypothetical protein
388	 38.51	0	382316..383629	-	437	24213088	-	LA0388	-	hypothetical protein
389	 35.86	0	383610..384719	-	369	24213089	-	LA0389	-	TPR repeat-containing protein
390	 36.85	0	384741..385166	-	141	24213090	-	LA0390	-	hypothetical protein
391	 40.89	+1	385169..387709	-	846	24213091	clpC	LA0391	-	ATPase (clpc)
392	 34.46	0	387854..388654	-	266	24213092	-	LA0392	-	hypothetical protein
393	 32.26	0	389036..389221	-	61	24213093	-	LA0393	-	hypothetical protein
394	 32.50	0	390250..390852	+	200	24213094	-	LA0394	-	integrase/recombinase
395	 39.33	0	390917..391183	+	88	24213095	-	LA0395	-	anti-anti-sigma factor
396	 35.05	0	391263..392777	+	504	24213096	-	LA0396	-	hypothetical protein
397	 37.02	0	392774..393424	+	216	24213097	-	LA0397	-	lipase/acylhydrolase
398	 23.58	-2	393485..393607	+	40	24213098	-	LA0398	-	hypothetical protein
399	 35.03	0	394068..395129	-	353	24213099	-	LA0399	-	paraoxonase 3-like protein
400	 34.85	0	395273..395536	+	87	24213100	-	LA0400	-	hypothetical protein
401	 37.47	0	397401..397883	-	160	24213101	-	LA0401	-	phosphohistidine phosphatase
402	 37.81	0	398091..399005	+	304	24213102	-	LA0402	-	ABC-type MDR transporter, ATPase component
403	 34.79	0	398998..399822	+	274	24213103	-	LA0403	-	hypothetical protein
404	 34.72	0	399906..401417	+	503	24213104	-	LA0404	-	HD family protein
405	 35.46	0	401414..402355	-	313	24213105	ksgA	LA0405	-	dimethyladenosine transferase
406	 31.90	0	402282..404591	-	769	24213106	-	LA0406	-	hypothetical protein
407	 27.78	-1	404647..404844	-	65	24213107	-	LA0407	-	hypothetical protein
408	 37.05	0	405456..406424	-	322	24213108	trpS	LA0408	-	tryptophanyl-tRNA synthetase
409	 36.74	0	406421..408241	-	606	24213109	-	LA0409	-	hypothetical protein
410	 42.09	+1	408247..408840	-	197	24213110	-	LA0410	-	hypothetical protein
411	 42.29	+1	408965..409924	-	319	24213111	etfA	LA0411	-	electron transfer flavoprotein subunit alpha
412	 42.65	+1	409936..410697	-	253	24213112	etfB	LA0412	-	electron transfer flavoprotein subunit beta
413	 34.75	0	410780..411202	-	140	24213113	-	LA0413	-	hypothetical protein
414	 41.18	+1	411260..412444	+	394	24213114	-	LA0414	-	isovaleryl-CoA dehydrogenase
415	 37.50	0	412441..413136	+	231	24213115	-	LA0415	-	SAM-dependent O-methyltransferase
416	 42.59	+1	413198..414277	-	359	24213116	-	LA0416	-	lipoprotein
417	 35.51	0	414587..415000	+	137	24213117	-	LA0417	-	SAM-dependent O-methyltransferase
418	 36.87	0	415451..416524	+	357	24213118	-	LA0418	-	transposase
419	 31.51	0	416652..417200	-	182	24213119	-	LA0419	-	hypothetical protein
420	 33.52	0	417974..418519	-	181	24213120	-	LA0420	-	hypothetical protein
421	 33.52	0	418597..419139	-	180	24213121	-	LA0421	-	hypothetical protein
422	 34.23	0	419448..419558	+	36	24213122	-	LA0422	-	hypothetical protein
423	 36.52	0	420312..421754	-	480	24213123	-	LA0423	-	hypothetical protein
424	 27.27	-1	421945..422142	-	65	24213124	-	LA0424	-	hypothetical protein
425	 28.02	-1	422474..423715	-	413	24213125	-	LA0425	-	hypothetical protein
426	 34.82	0	423910..425460	-	516	24213126	-	LA0426	-	hypothetical protein
427	 33.47	0	426128..426847	-	239	24213127	-	LA0427	-	hypothetical protein
428	 31.44	0	426865..427551	-	228	24213128	-	LA0428	-	TetR family transcriptional regulator
429	 34.68	0	427560..428450	-	296	24213129	-	LA0429	-	hypothetical protein
430	 37.68	0	429451..430209	+	252	24213130	-	LA0430	-	hypothetical protein
431	 36.18	0	431264..431614	+	116	24213131	-	LA0431	-	hypothetical protein
432	 27.49	-1	431611..432123	+	170	24213132	-	LA0432	-	hypothetical protein
433	 33.33	0	432131..432676	+	181	24213133	-	LA0433	-	hypothetical protein
434	 33.33	0	433019..433141	-	40	24213134	-	LA0434	-	hypothetical protein
435	 36.61	0	433138..433320	-	60	24213135	-	LA0435	-	hypothetical protein
436	 35.46	0	433567..433707	-	46	24213136	-	LA0436	-	hypothetical protein
437	 22.42	-2	433691..433855	-	54	24213137	-	LA0437	-	hypothetical protein
438	 38.52	0	434046..435743	-	565	24213138	-	LA0438	-	Acyl-CoA dehydrogenase
439	 39.06	0	436339..437997	-	552	24213139	pmgI	LA0439	-	phosphoglyceromutase
440	 30.00	-1	438260..438379	+	39	24213140	-	LA0440	-	hypothetical protein
441	 33.83	0	438376..440394	+	672	24213141	-	LA0441	-	hypothetical protein
442	 36.46	0	441059..441922	-	287	24213142	-	LA0442	-	hypothetical protein
443	 31.33	0	442005..442553	+	182	24213143	-	LA0443	-	RNA polymerase ECF-type sigma factor
444	 35.37	0	442683..443762	+	359	24213144	-	LA0444	-	hypothetical protein
445	 28.95	-1	444965..445078	+	37	24213145	-	LA0445	-	hypothetical protein
446	 40.65	+1	445240..445704	-	154	24213146	-	LA0446	-	hypothetical protein
447	 33.33	0	447001..447171	+	56	24213147	-	LA0447	-	hypothetical protein
448	 35.96	0	447243..449183	+	646	24213148	-	LA0448	-	ABC transporter, ATP-binding protein
449	 37.72	0	449681..450022	+	113	24213149	-	LA0449	-	rhodanese-like protein
450	 32.14	0	450507..451343	+	278	24213150	-	LA0450	-	hypothetical protein
451	 36.87	0	452072..453145	-	357	24213151	-	LA0451	-	transposase
452	 37.44	0	453648..453842	-	64	24213152	-	LA0452	-	hypothetical protein
453	 44.65	+1	453980..454138	+	52	24213153	-	LA0453	-	hypothetical protein
454	 26.88	-1	454253..454438	+	61	24213154	-	LA0454	-	hypothetical protein
455	 38.07	0	454664..455275	-	203	24213155	-	LA0455	-	TetR family transcriptional regulator
456	 34.69	0	455600..455746	+	48	24213156	-	LA0456	-	hypothetical protein
457	 44.67	+1	456145..457326	+	393	24213157	thiL1	LA0457	-	acetyl-CoA acetyltransferase
458	 31.26	0	457437..457871	+	144	24213158	-	LA0458	-	hypothetical protein
459	 36.32	0	457968..459305	-	445	24213159	amiB1	LA0459	-	N-acetylmuramoyl-L-alanine amidase
460	 33.33	0	459302..459883	-	193	24213160	-	LA0460	-	hypothetical protein
461	 31.48	0	459994..460155	+	53	24213161	-	LA0461	-	hypothetical protein
462	 39.16	0	460361..461167	-	268	24213162	-	LA0462	-	hypothetical protein
463	 45.61	+2	461277..461732	+	151	24213163	ribH	LA0463	-	riboflavin synthase beta chain
464	 37.65	0	461733..462149	+	138	24213164	nusB	LA0464	-	transcription antitermination protein NusB
465	 39.72	0	462142..464208	+	688	24213165	-	LA0465	-	TPR repeat-containing protein
466	 36.67	0	464229..465545	+	438	24213166	-	LA0466	-	PBS lyase HEAT-like protein
467	 30.88	0	466137..466991	-	284	24213167	-	LA0467	-	hypothetical protein
468	 35.29	0	467352..467453	+	33	24213168	-	LA0468	-	hypothetical protein
469	 39.94	+1	468252..469538	+	428	24213169	leuA2	LA0469	-	alpha-isopropylmalate synthase
470	 37.10	0	469546..469731	-	61	24213170	-	LA0470	-	hypothetical protein
471	 35.65	0	469977..470450	-	157	24213171	-	LA0471	-	PBS lyase HEAT-like protein
472	 26.02	-1	470627..470749	-	40	24213172	-	LA0472	-	hypothetical protein
473	 32.32	0	470998..471195	+	65	24213173	-	LA0473	-	hypothetical protein
474	 35.40	0	471212..472372	+	386	24213174	-	LA0474	-	hypothetical protein
475	 32.56	0	472841..472969	-	42	24213175	-	LA0475	-	hypothetical protein
476	 31.15	0	473250..473432	+	60	24213176	-	LA0476	-	hypothetical protein
477	 37.41	0	473474..474895	+	473	24213177	-	LA0477	-	alcohol dehydrogenase
478	 34.77	0	475443..475859	-	138	24213178	-	LA0478	-	hypothetical protein
479	 33.01	0	475906..476211	+	101	24213179	-	LA0479	-	hypothetical protein
480	 36.99	0	476297..476515	+	72	24213180	-	LA0480	-	hypothetical protein
481	 40.13	+1	476631..476939	+	102	24213181	-	LA0481	-	hypothetical protein
482	 36.57	0	476987..477202	-	71	24213182	-	LA0482	-	hypothetical protein
483	 35.06	0	477129..477359	-	76	24213183	-	LA0483	-	hypothetical protein
35.02	MEAN

4.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.