IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4202	 37.98	0	4170968..4171807	+	279	24216902	-	LA4203	-	hypothetical protein
4203	 36.71	0	4171968..4173002	+	344	24216903	-	LA4204	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
4204	 34.84	0	4172999..4173796	+	265	24216904	cobS	LA4205	-	cobalamin synthase
4205	 30.77	0	4173781..4174365	+	194	24216905	gpmA	LA4206	-	phosphoglycerate mutase
4206	 34.30	0	4174865..4175998	+	377	24216906	-	LA4207	-	hypothetical protein
4207	 33.71	0	4176002..4177837	-	611	24216907	-	LA4208	-	hypothetical protein
4208	 36.25	0	4177839..4179926	-	695	24216908	-	LA4209	-	hypothetical protein
4209	 38.74	0	4180902..4182749	-	615	24216909	-	LA4210	-	voltage-gated ClC-type chloride channel eriC
4210	 27.13	-1	4182990..4183118	-	42	24216910	-	LA4211	-	hypothetical protein
4211	 32.95	0	4183570..4184346	-	258	24216911	-	LA4212	-	hypothetical protein
4212	 36.18	0	4184343..4185254	-	303	24216912	-	LA4214	-	CAAX amino protease
4213	 35.31	0	4185227..4186237	+	336	24216913	-	LA4213	-	peptidase, M23/M37 family protein
4214	 34.54	0	4186230..4187306	+	358	24216914	-	LA4215	-	strictosidine synthase precursor
4215	 41.55	+1	4187316..4188788	-	490	24216915	sirA	LA4216	-	sulfite reductase subunit beta
4216	 34.48	0	4189038..4189646	-	202	24216916	-	LA4217	-	siroheme synthase
4217	 39.88	+1	4189636..4190475	-	279	24216917	cysG	LA4218	-	uroporphyrinogen III methyltransferase
4218	 39.81	0	4190479..4191729	-	416	24216918	cysN	LA4219	-	hypothetical protein
4219	 40.74	+1	4191729..4192646	-	305	24216919	cysD	LA4220	-	sulfate adenylyltransferase subunit 2
4220	 40.62	+1	4192643..4193383	-	246	24216920	cysH	LA4221	-	phosphoadenosine phosphosulfate reductase
4221	 40.54	+1	4193313..4193423	-	36	24216921	-	LA4222	-	hypothetical protein
4222	 29.35	-1	4194021..4194221	-	66	24216922	-	LA4223	-	hypothetical protein
4223	 45.55	+2	4195011..4196369	+	452	24216923	-	LA4224	-	styrene monooxygenase component 1-like protein
4224	 25.83	-1	4197317..4197436	+	39	24216924	-	LA4225	-	hypothetical protein
4225	 31.91	0	4197749..4198660	+	303	24216925	-	LA4226	-	CAAX amino protease
4226	 35.47	0	4199625..4200746	+	373	24216926	-	LA4227	-	hypothetical protein
4227	 36.40	0	4200848..4201858	+	336	24216927	dppB	LA4228	-	peptide ABC transporter permease
4228	 36.02	0	4201819..4202898	+	359	24216928	dppC	LA4229	-	peptide ABC transporter permease
4229	 37.82	0	4202895..4203896	+	333	24216929	dppD	LA4230	-	peptide ABC transporter ATP-binding protein
4230	 34.59	0	4203893..4204846	+	317	24216930	oppF	LA4231	-	oligopeptide transport ATP-binding protein oppF
4231	 33.72	0	4204825..4206906	+	693	24216931	-	LA4232	-	hypothetical protein
4232	 34.28	0	4206930..4207352	+	140	24216932	-	LA4233	-	hypothetical protein
4233	 27.78	-1	4207601..4207708	+	35	24216933	-	LA4234	-	hypothetical protein
4234	 38.61	0	4207733..4208263	+	176	24216934	-	LA4235	-	hypothetical protein
4235	 33.28	0	4208352..4210184	-	610	24216935	mutS3	LA4236	-	MutS-like mismatch repair protein, ATPase
4236	 37.55	0	4210181..4210417	-	78	24216936	-	LA4237	-	hypothetical protein
4237	 30.56	0	4210422..4210529	+	35	24216937	-	LA4238	-	hypothetical protein
4238	 38.63	0	4211011..4212633	-	540	24216938	-	LA4240	-	hypothetical protein
4239	 32.41	0	4212605..4212712	+	35	24216939	-	LA4239	-	hypothetical protein
4240	 33.33	0	4213068..4213202	+	44	24216940	-	LA4241	-	hypothetical protein
4241	 39.91	+1	4213216..4214340	-	374	24216941	ilvC	LA4242	-	ketol-acid reductoisomerase
4242	 35.91	0	4215230..4216822	-	530	24216942	-	LA4243	-	methyl-accepting chemotaxis protein
4243	 32.06	0	4217501..4217971	+	156	24216943	-	LA4244	-	hypothetical protein
4244	 35.50	0	4218339..4219772	+	477	24216944	-	LA4245	-	flavin-containing monooxygenase
4245	 32.51	0	4219880..4221211	+	443	24216945	-	LA4246	-	phosphodiesterase/alkaline phosphatase D
4246	 30.90	0	4221218..4222039	+	273	24216946	-	LA4247	-	phospholipase/carboxylesterase family protein
4247	 37.27	0	4222691..4223554	-	287	24216947	-	LA4248	-	methylthioadenosine phosphorylase
4248	 34.10	0	4224195..4225763	-	522	24216948	-	LA4249	-	methyl-accepting chemotaxis protein
4249	 26.67	-1	4225804..4225908	+	34	24216949	-	LA4250	-	hypothetical protein
4250	 35.02	0	4226339..4227169	-	276	24216950	-	LA4251	-	ADA regulatory protein
4251	 35.44	0	4227682..4228392	+	236	24216951	-	LA4252	-	hypothetical protein
4252	 35.53	0	4228951..4229724	-	257	24216952	-	LA4253	-	metal binding periplasmic protein
4253	 39.68	0	4229746..4231731	-	661	24216953	-	LA4254	-	acetyl-CoA synthetase
4254	 36.96	0	4231810..4232361	-	183	24216954	folE	LA4255	-	GTP cyclohydrolase I
4255	 36.19	0	4232662..4232766	-	34	24216955	-	LA4257	-	hypothetical protein
4256	 32.01	0	4232755..4233966	+	403	24216956	-	LA4256	-	glycosyl transferase
4257	 35.38	0	4234480..4234968	-	162	24216957	-	LA4258	-	hypothetical protein
4258	 31.64	0	4234949..4235302	-	117	24216958	-	LA4259	-	ArsR family transcriptional regulator
4259	 38.52	0	4235802..4235936	+	44	24216959	-	LA4260	-	hypothetical protein
4260	 31.15	0	4236576..4237535	-	319	24216960	-	LA4261	-	UDP-glucose 4-epimerase
4261	 32.84	0	4237631..4238035	+	134	24216961	-	LA4262	-	hypothetical protein
4262	 35.11	0	4238414..4239202	-	262	24216962	-	LA4263	-	hypothetical protein
4263	 36.30	0	4239308..4241737	+	809	24216963	gpsA3	LA4264	-	glycerol-3-phosphate dehydrogenase
4264	 33.33	0	4242454..4242564	-	36	24216964	-	LA4265	-	hypothetical protein
4265	 39.86	+1	4242776..4243939	-	387	24216965	purT	LA4266	-	phosphoribosylglycinamide formyltransferase 2
4266	 31.87	0	4244096..4245253	-	385	24216966	-	LA4267	-	hypothetical protein
4267	 30.45	0	4245479..4247110	-	543	24216967	-	LA4269	-	AraC family transcriptional regulator
4268	 22.96	-2	4247095..4247229	+	44	24216968	-	LA4268	-	hypothetical protein
4269	 40.84	+1	4247670..4248575	+	301	24216969	-	LA4270	-	hypothetical protein
4270	 21.48	-2	4248720..4248854	+	44	24216970	-	LA4271	-	hypothetical protein
4271	 39.58	0	4248930..4250882	+	650	24216971	-	LA4272	-	hypothetical protein
4272	 38.33	0	4250901..4252622	+	573	24216972	-	LA4273	-	hydrogenase-4 component B
4273	 39.98	+1	4252589..4253476	+	295	24216973	hycD	LA4274	-	hydrogenase-4 component C
4274	 35.59	0	4253495..4254115	+	206	24216974	-	LA4275	-	hydrogenase-4 component E
4275	 38.88	0	4254112..4255320	+	402	24216975	hyfF	LA4276	-	hydrogenase-4 component F
4276	 38.83	0	4255321..4256721	+	466	24216976	hycE	LA4277	-	hydrogenase-3 component E
4277	 40.27	+1	4256718..4257539	+	273	24216977	hycG	LA4278	-	formate hydrogenlyase subunit 7
4278	 23.70	-2	4257717..4258505	+	262	24216978	-	LA4279	-	hypothetical protein
4279	 23.81	-2	4258502..4259047	+	181	24216979	-	LA4280	-	hypothetical protein
4280	 23.28	-2	4259012..4259419	-	135	24216980	-	LA4281	-	hypothetical protein
4281	 35.17	0	4259531..4260946	-	471	24216981	-	LA4282	-	hypothetical protein
4282	 20.72	-2	4261120..4261230	+	36	24216982	-	LA4283	-	hypothetical protein
4283	 29.73	-1	4262044..4262154	+	36	24216983	-	LA4284	-	hypothetical protein
4284	 28.82	-1	4262120..4263049	-	309	24216984	-	LA4285	-	hypothetical protein
4285	 34.57	0	4263163..4264053	+	296	24216985	-	LA4286	-	hypothetical protein
4286	 34.38	0	4264366..4264746	+	126	24216986	-	LA4287	-	ABC-type multidrug transport system, ATP-ase component
4287	 35.63	0	4264747..4265313	+	188	24216987	-	LA4288	-	ABC transporter, ATP-binding protein
4288	 35.73	0	4265310..4266392	+	360	24216988	-	LA4289	-	hypothetical protein
4289	 35.60	0	4266389..4267537	+	382	24216989	pyrD	LA4290	-	dihydroorotate dehydrogenase 2
4290	 38.18	0	4267641..4269083	+	480	24216990	-	LA4291	-	hypothetical protein
4291	 31.85	0	4269073..4269678	+	201	24216991	-	LA4292	-	hypothetical protein
4292	 36.15	0	4270157..4270831	-	224	24216992	-	LA4293	-	hypothetical protein
4293	 35.83	0	4270861..4271421	+	186	24216993	-	LA4294	-	phosphoglycerate mutase family protein
4294	 32.97	0	4271421..4271972	+	183	24216994	-	LA4295	-	hypoxanthine-guanine phosphoribosyltransferase
4295	 36.83	0	4272264..4274036	+	590	24216995	kefC	LA4296	-	glutathione-regulated potassium-efflux system protein kefC
4296	 29.57	-1	4274042..4274227	+	61	24216996	-	LA4297	-	hypothetical protein
4297	 32.44	0	4274755..4275201	-	148	24216997	-	LA4298	-	MarR family transcriptional regulator
4298	 32.33	0	4275225..4275722	-	165	24216998	-	LA4299	-	glutathione peroxidase
4299	 37.78	0	4276374..4277138	+	254	24216999	-	LA4300	-	ThiJ/PfpI family protein
4300	 35.39	0	4277149..4278945	+	598	24217000	kefB	LA4301	-	glutathione-regulated potassium-efflux system protein kefB
4301	 29.41	-1	4279102..4279305	+	67	24217001	-	LA4302	-	hypothetical protein
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.