IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4142	 38.81	0	4113616..4114491	+	291	24216842	-	LA4143	-	lipoprotein
4143	 38.54	0	4114558..4114749	-	63	24216843	-	LA4144	-	hypothetical protein
4144	 31.51	0	4114883..4115101	-	72	24216844	-	LA4145	-	hypothetical protein
4145	 31.51	0	4116081..4116959	+	292	24216845	-	LA4146	-	hypothetical protein
4146	 27.03	-1	4117153..4117263	-	36	24216846	-	LA4147	-	hypothetical protein
4147	 43.00	+1	4117558..4117764	+	68	24216847	-	LA4148	-	hypothetical protein
4148	 35.99	0	4118316..4118729	-	137	24216848	-	LA4149	-	4-hydroxybenzoyl-CoA thioesterase
4149	 35.28	0	4118731..4119756	-	341	24216849	pheS	LA4150	-	phenylalanyl-tRNA synthetase alpha chain
4150	 36.77	0	4119753..4121150	-	465	24216850	-	LA4151	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase
4151	 33.66	0	4121147..4121764	-	205	24216851	-	LA4152	-	hypothetical protein
4152	 35.69	0	4121751..4122854	-	367	24216852	-	LA4153	-	hypothetical protein
4153	 36.83	0	4122851..4124878	-	675	24216853	-	LA4154	-	hypothetical protein
4154	 34.57	0	4124866..4125594	-	242	24216854	-	LA4155	-	ABC transporter permease
4155	 37.74	0	4125599..4126528	-	309	24216855	-	LA4156	-	ABC transporter ATP-binding protein
4156	 35.14	0	4126916..4127137	-	73	24216856	-	LA4157	-	hypothetical protein
4157	 35.99	0	4127119..4127682	-	187	24216857	-	LA4158	-	hypothetical protein
4158	 37.74	0	4127844..4129001	+	385	24216858	-	LA4159	-	malonyl-CoA transacylase
4159	 32.52	0	4129340..4130563	+	407	24216859	-	LA4160	-	hypothetical protein
4160	 37.72	0	4130892..4133237	-	781	24216860	-	LA4161	-	thermolysin
4161	 27.12	-1	4133234..4133410	-	58	24216861	-	LA4162	-	hypothetical protein
4162	 32.16	0	4133712..4133882	-	56	24216862	-	LA4163	-	hypothetical protein
4163	 36.82	0	4134306..4136684	-	792	24216863	-	LA4164	-	thermolysin
4164	 35.94	0	4137365..4137556	-	63	24216864	-	LA4166	-	hypothetical protein
4165	 39.60	0	4137548..4138759	+	403	24216865	-	LA4165	-	argininosuccinate synthase
4166	 36.02	0	4138756..4139238	+	160	24216866	coaD	LA4167	-	phosphopantetheine adenylyltransferase
4167	 40.58	+1	4139248..4139661	+	137	24216867	-	LA4168	-	nucleoside diphosphate kinase
4168	 22.86	-2	4139772..4139876	-	34	24216868	-	LA4169	-	hypothetical protein
4169	 36.51	0	4140130..4140318	+	62	24216869	-	LA4170	-	hypothetical protein
4170	 38.38	0	4141233..4142699	+	488	24216870	icd2	LA4171	-	isocitrate dehydrogenase
4171	 33.33	0	4142912..4143343	+	143	24216871	-	LA4172	-	hypothetical protein
4172	 36.50	0	4143872..4144282	-	136	24216872	-	LA4173	-	two-component response regulator
4173	 33.78	0	4144266..4145825	-	519	24216873	-	LA4174	-	two-component hybrid sensor and regulator
4174	 25.93	-1	4145926..4146033	+	35	24216874	-	LA4175	-	hypothetical protein
4175	 37.86	0	4146321..4146563	-	80	24216875	-	LA4176	-	hypothetical protein
4176	 34.92	0	4146644..4147210	+	188	24216876	-	LA4177	-	hypothetical protein
4177	 39.95	+1	4147207..4148763	+	518	24216877	-	LA4178	-	GMC oxidoreductase
4178	 30.42	0	4149415..4149654	+	79	24216878	-	LA4179	-	hypothetical protein
4179	 33.42	0	4149651..4150829	+	392	24216879	-	LA4180	-	aminotransferase
4180	 37.06	0	4151843..4152835	-	330	24216880	-	LA4181	-	carboxypeptidase
4181	 32.85	0	4152844..4153257	-	137	24216881	-	LA4182	-	lipoprotein
4182	 37.31	0	4153269..4153997	-	242	24216882	motB4	LA4183	-	flagellar motor protein MotB
4183	 35.33	0	4153994..4154644	-	216	24216883	-	LA4184	-	hypothetical protein
4184	 36.34	0	4154641..4155870	-	409	24216884	-	LA4185	-	hypothetical protein
4185	 35.77	0	4155966..4156088	+	40	24216885	-	LA4186	-	hypothetical protein
4186	 38.26	0	4156160..4156687	-	175	24216886	-	LA4187	-	hypothetical protein
4187	 33.91	0	4156824..4157684	-	286	24216887	-	LA4188	-	hypothetical protein
4188	 35.71	0	4157686..4158273	-	195	24216888	-	LA4189	-	hypothetical protein
4189	 37.80	0	4158346..4159911	-	521	24216889	gltX	LA4190	-	glutamyl-tRNA synthetase
4190	 34.64	0	4159908..4160822	-	304	24216890	-	LA4191	-	hypothetical protein
4191	 30.23	0	4160836..4160964	+	42	24216891	-	LA4192	-	hypothetical protein
4192	 36.79	0	4161026..4162414	+	462	24216892	gyrA2	LA4193	-	DNA gyrase subunit A
4193	 37.36	0	4162411..4164546	+	711	24216893	gyrB2	LA4194	-	DNA gyrase B subunit
4194	 36.92	0	4164607..4165080	+	157	24216894	-	LA4195	-	hypothetical protein
4195	 27.23	-1	4165364..4166215	+	283	24216895	-	LA4196	-	hypothetical protein
4196	 32.48	0	4166235..4166351	+	38	24216896	-	LA4197	-	hypothetical protein
4197	 35.60	0	4166365..4167336	-	323	24216897	-	LA4198	-	hypothetical protein
4198	 31.86	0	4167652..4167855	+	67	24216898	-	LA4199	-	hypothetical protein
4199	 38.62	0	4168147..4169490	-	447	24216899	-	LA4200	-	L-amino acid oxidase
4200	 36.60	0	4170097..4170249	+	50	24216900	-	LA4201	-	hypothetical protein
4201	 33.16	0	4170254..4170823	+	189	24216901	-	LA4202	-	hypothetical protein
4202	 37.98	0	4170968..4171807	+	279	24216902	-	LA4203	-	hypothetical protein
4203	 36.71	0	4171968..4173002	+	344	24216903	-	LA4204	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
4204	 34.84	0	4172999..4173796	+	265	24216904	cobS	LA4205	-	cobalamin synthase
4205	 30.77	0	4173781..4174365	+	194	24216905	gpmA	LA4206	-	phosphoglycerate mutase
4206	 34.30	0	4174865..4175998	+	377	24216906	-	LA4207	-	hypothetical protein
4207	 33.71	0	4176002..4177837	-	611	24216907	-	LA4208	-	hypothetical protein
4208	 36.25	0	4177839..4179926	-	695	24216908	-	LA4209	-	hypothetical protein
4209	 38.74	0	4180902..4182749	-	615	24216909	-	LA4210	-	voltage-gated ClC-type chloride channel eriC
4210	 27.13	-1	4182990..4183118	-	42	24216910	-	LA4211	-	hypothetical protein
4211	 32.95	0	4183570..4184346	-	258	24216911	-	LA4212	-	hypothetical protein
4212	 36.18	0	4184343..4185254	-	303	24216912	-	LA4214	-	CAAX amino protease
4213	 35.31	0	4185227..4186237	+	336	24216913	-	LA4213	-	peptidase, M23/M37 family protein
4214	 34.54	0	4186230..4187306	+	358	24216914	-	LA4215	-	strictosidine synthase precursor
4215	 41.55	+1	4187316..4188788	-	490	24216915	sirA	LA4216	-	sulfite reductase subunit beta
4216	 34.48	0	4189038..4189646	-	202	24216916	-	LA4217	-	siroheme synthase
4217	 39.88	+1	4189636..4190475	-	279	24216917	cysG	LA4218	-	uroporphyrinogen III methyltransferase
4218	 39.81	0	4190479..4191729	-	416	24216918	cysN	LA4219	-	hypothetical protein
4219	 40.74	+1	4191729..4192646	-	305	24216919	cysD	LA4220	-	sulfate adenylyltransferase subunit 2
4220	 40.62	+1	4192643..4193383	-	246	24216920	cysH	LA4221	-	phosphoadenosine phosphosulfate reductase
4221	 40.54	+1	4193313..4193423	-	36	24216921	-	LA4222	-	hypothetical protein
4222	 29.35	-1	4194021..4194221	-	66	24216922	-	LA4223	-	hypothetical protein
4223	 45.55	+2	4195011..4196369	+	452	24216923	-	LA4224	-	styrene monooxygenase component 1-like protein
4224	 25.83	-1	4197317..4197436	+	39	24216924	-	LA4225	-	hypothetical protein
4225	 31.91	0	4197749..4198660	+	303	24216925	-	LA4226	-	CAAX amino protease
4226	 35.47	0	4199625..4200746	+	373	24216926	-	LA4227	-	hypothetical protein
4227	 36.40	0	4200848..4201858	+	336	24216927	dppB	LA4228	-	peptide ABC transporter permease
4228	 36.02	0	4201819..4202898	+	359	24216928	dppC	LA4229	-	peptide ABC transporter permease
4229	 37.82	0	4202895..4203896	+	333	24216929	dppD	LA4230	-	peptide ABC transporter ATP-binding protein
4230	 34.59	0	4203893..4204846	+	317	24216930	oppF	LA4231	-	oligopeptide transport ATP-binding protein oppF
4231	 33.72	0	4204825..4206906	+	693	24216931	-	LA4232	-	hypothetical protein
4232	 34.28	0	4206930..4207352	+	140	24216932	-	LA4233	-	hypothetical protein
4233	 27.78	-1	4207601..4207708	+	35	24216933	-	LA4234	-	hypothetical protein
4234	 38.61	0	4207733..4208263	+	176	24216934	-	LA4235	-	hypothetical protein
4235	 33.28	0	4208352..4210184	-	610	24216935	mutS3	LA4236	-	MutS-like mismatch repair protein, ATPase
4236	 37.55	0	4210181..4210417	-	78	24216936	-	LA4237	-	hypothetical protein
4237	 30.56	0	4210422..4210529	+	35	24216937	-	LA4238	-	hypothetical protein
4238	 38.63	0	4211011..4212633	-	540	24216938	-	LA4240	-	hypothetical protein
4239	 32.41	0	4212605..4212712	+	35	24216939	-	LA4239	-	hypothetical protein
4240	 33.33	0	4213068..4213202	+	44	24216940	-	LA4241	-	hypothetical protein
4241	 39.91	+1	4213216..4214340	-	374	24216941	ilvC	LA4242	-	ketol-acid reductoisomerase
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.