IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4097	 35.23	0	4066711..4067289	+	192	24216797	rpoE2	LA4098	-	RNA polymerase ECF-type sigma factor
4098	 33.87	0	4067273..4067644	+	123	24216798	-	LA4099	-	hypothetical protein
4099	 31.99	0	4067641..4068087	+	148	24216799	-	LA4100	-	hypothetical protein
4100	 31.43	0	4068468..4068572	+	34	24216800	-	LA4101	-	hypothetical protein
4101	 33.33	0	4069267..4069407	-	46	24216801	-	LA4103	-	hypothetical protein
4102	 38.60	0	4069396..4070097	+	233	24216802	regX	LA4102	-	sensory transduction protein regX3
4103	 36.93	0	4070087..4071478	+	463	24216803	-	LA4104	-	two-component hybrid sensor and regulator
4104	 37.22	0	4071547..4072704	+	385	24216804	argJ	LA4105	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
4105	 33.33	0	4072685..4073989	+	434	24216805	-	LA4106	-	hypothetical protein
4106	 33.21	0	4073986..4076364	+	792	24216806	rsbP	LA4107	-	sigmaB regulation protein phosphatase 2C rsbP
4107	 31.44	0	4076718..4077404	-	228	24216807	-	LA4108	-	hypothetical protein
4108	 37.60	0	4077609..4078733	-	374	24216808	-	LA4109	-	hypothetical protein
4109	 35.69	0	4078730..4078984	-	84	24216809	-	LA4110	-	hypothetical protein
4110	 28.57	-1	4079545..4079691	+	48	24216810	-	LA4111	-	hypothetical protein
4111	 36.19	0	4079753..4079857	+	34	24216811	-	LA4112	-	hypothetical protein
4112	 34.45	0	4080320..4080676	-	118	24216812	-	LA4113	-	hypothetical protein
4113	 36.42	0	4080696..4082219	-	507	24216813	-	LA4114	-	3-keto-acyl-CoA thiolase
4114	 38.89	0	4082496..4082945	-	149	24216814	-	LA4115	-	MaoC family protein
4115	 27.03	-1	4083564..4083674	+	36	24216815	-	LA4116	-	hypothetical protein
4116	 35.51	0	4083775..4085379	-	534	24216816	-	LA4117	-	Acyl-CoA dehydrogenase
4117	 22.76	-2	4085774..4085896	-	40	24216817	-	LA4118	-	hypothetical protein
4118	 37.19	0	4086408..4088453	-	681	24216818	ligA	LA4119	-	DNA ligase
4119	 36.73	0	4088472..4089443	-	323	24216819	-	LA4120	-	M23/M37 familypeptidase
4120	 35.28	0	4089724..4090083	-	119	24216820	-	LA4121	-	hypothetical protein
4121	 33.92	0	4090101..4090610	-	169	24216821	rpoE3	LA4122	-	RNA polymerase ECF-type sigma factor
4122	 37.80	0	4090618..4091199	-	193	24216822	-	LA4123	-	hypothetical protein
4123	 35.50	0	4091332..4092024	+	230	24216823	sanA	LA4124	-	SanA protein
4124	 22.48	-2	4092842..4092970	+	42	24216824	-	LA4125	-	hypothetical protein
4125	 30.60	0	4093319..4094452	-	377	24216825	-	LA4126	-	sensory transduction histidine kinase
4126	 32.10	0	4094657..4095787	-	376	24216826	-	LA4127	-	sensory transduction histidine kinase
4127	 38.26	0	4096183..4096527	-	114	24216827	-	LA4128	-	lipoprotein
4128	 37.23	0	4096524..4097036	-	170	24216828	-	LA4129	-	ankyrin repeat-containing protein
4129	 30.30	0	4097575..4098102	+	175	24216829	-	LA4130	-	LuxR family transcriptional regulator
4130	 34.75	0	4098661..4100640	+	659	24216830	-	LA4131	-	M48 family peptidase
4131	 40.12	+1	4101122..4101283	-	53	24216831	-	LA4132	-	hypothetical protein
4132	 33.33	0	4101613..4102140	+	175	24216832	-	LA4133	-	Appr-1''-p processing enzyme family protein
4133	 27.19	-1	4102557..4102670	+	37	24216833	-	LA4134	-	hypothetical protein
4134	 41.48	+1	4102858..4105446	-	862	24216834	-	LA4135	-	hypothetical protein
4135	 38.76	0	4106184..4106312	-	42	24216835	-	LA4136	-	hypothetical protein
4136	 45.00	+2	4107516..4108055	-	179	24216836	-	LA4137	-	NADPH-dependent FMN reductase
4137	 42.33	+1	4108362..4109672	+	436	24216837	had	LA4138	-	3-hydroxyacyl-CoA dehydrogenase
4138	 43.13	+1	4109688..4110953	+	421	24216838	fadA	LA4139	-	acetyl-CoA acetyltransferase
4139	 35.62	0	4110956..4111393	+	145	24216839	-	LA4140	-	hypothetical protein
4140	 44.44	+1	4111947..4112099	+	50	24216840	-	LA4141	-	hypothetical protein
4141	 38.63	0	4112124..4113086	-	320	24216841	-	LA4142	-	lipoprotein
4142	 38.81	0	4113616..4114491	+	291	24216842	-	LA4143	-	lipoprotein
4143	 38.54	0	4114558..4114749	-	63	24216843	-	LA4144	-	hypothetical protein
4144	 31.51	0	4114883..4115101	-	72	24216844	-	LA4145	-	hypothetical protein
4145	 31.51	0	4116081..4116959	+	292	24216845	-	LA4146	-	hypothetical protein
4146	 27.03	-1	4117153..4117263	-	36	24216846	-	LA4147	-	hypothetical protein
4147	 43.00	+1	4117558..4117764	+	68	24216847	-	LA4148	-	hypothetical protein
4148	 35.99	0	4118316..4118729	-	137	24216848	-	LA4149	-	4-hydroxybenzoyl-CoA thioesterase
4149	 35.28	0	4118731..4119756	-	341	24216849	pheS	LA4150	-	phenylalanyl-tRNA synthetase alpha chain
4150	 36.77	0	4119753..4121150	-	465	24216850	-	LA4151	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase
4151	 33.66	0	4121147..4121764	-	205	24216851	-	LA4152	-	hypothetical protein
4152	 35.69	0	4121751..4122854	-	367	24216852	-	LA4153	-	hypothetical protein
4153	 36.83	0	4122851..4124878	-	675	24216853	-	LA4154	-	hypothetical protein
4154	 34.57	0	4124866..4125594	-	242	24216854	-	LA4155	-	ABC transporter permease
4155	 37.74	0	4125599..4126528	-	309	24216855	-	LA4156	-	ABC transporter ATP-binding protein
4156	 35.14	0	4126916..4127137	-	73	24216856	-	LA4157	-	hypothetical protein
4157	 35.99	0	4127119..4127682	-	187	24216857	-	LA4158	-	hypothetical protein
4158	 37.74	0	4127844..4129001	+	385	24216858	-	LA4159	-	malonyl-CoA transacylase
4159	 32.52	0	4129340..4130563	+	407	24216859	-	LA4160	-	hypothetical protein
4160	 37.72	0	4130892..4133237	-	781	24216860	-	LA4161	-	thermolysin
4161	 27.12	-1	4133234..4133410	-	58	24216861	-	LA4162	-	hypothetical protein
4162	 32.16	0	4133712..4133882	-	56	24216862	-	LA4163	-	hypothetical protein
4163	 36.82	0	4134306..4136684	-	792	24216863	-	LA4164	-	thermolysin
4164	 35.94	0	4137365..4137556	-	63	24216864	-	LA4166	-	hypothetical protein
4165	 39.60	0	4137548..4138759	+	403	24216865	-	LA4165	-	argininosuccinate synthase
4166	 36.02	0	4138756..4139238	+	160	24216866	coaD	LA4167	-	phosphopantetheine adenylyltransferase
4167	 40.58	+1	4139248..4139661	+	137	24216867	-	LA4168	-	nucleoside diphosphate kinase
4168	 22.86	-2	4139772..4139876	-	34	24216868	-	LA4169	-	hypothetical protein
4169	 36.51	0	4140130..4140318	+	62	24216869	-	LA4170	-	hypothetical protein
4170	 38.38	0	4141233..4142699	+	488	24216870	icd2	LA4171	-	isocitrate dehydrogenase
4171	 33.33	0	4142912..4143343	+	143	24216871	-	LA4172	-	hypothetical protein
4172	 36.50	0	4143872..4144282	-	136	24216872	-	LA4173	-	two-component response regulator
4173	 33.78	0	4144266..4145825	-	519	24216873	-	LA4174	-	two-component hybrid sensor and regulator
4174	 25.93	-1	4145926..4146033	+	35	24216874	-	LA4175	-	hypothetical protein
4175	 37.86	0	4146321..4146563	-	80	24216875	-	LA4176	-	hypothetical protein
4176	 34.92	0	4146644..4147210	+	188	24216876	-	LA4177	-	hypothetical protein
4177	 39.95	+1	4147207..4148763	+	518	24216877	-	LA4178	-	GMC oxidoreductase
4178	 30.42	0	4149415..4149654	+	79	24216878	-	LA4179	-	hypothetical protein
4179	 33.42	0	4149651..4150829	+	392	24216879	-	LA4180	-	aminotransferase
4180	 37.06	0	4151843..4152835	-	330	24216880	-	LA4181	-	carboxypeptidase
4181	 32.85	0	4152844..4153257	-	137	24216881	-	LA4182	-	lipoprotein
4182	 37.31	0	4153269..4153997	-	242	24216882	motB4	LA4183	-	flagellar motor protein MotB
4183	 35.33	0	4153994..4154644	-	216	24216883	-	LA4184	-	hypothetical protein
4184	 36.34	0	4154641..4155870	-	409	24216884	-	LA4185	-	hypothetical protein
4185	 35.77	0	4155966..4156088	+	40	24216885	-	LA4186	-	hypothetical protein
4186	 38.26	0	4156160..4156687	-	175	24216886	-	LA4187	-	hypothetical protein
4187	 33.91	0	4156824..4157684	-	286	24216887	-	LA4188	-	hypothetical protein
4188	 35.71	0	4157686..4158273	-	195	24216888	-	LA4189	-	hypothetical protein
4189	 37.80	0	4158346..4159911	-	521	24216889	gltX	LA4190	-	glutamyl-tRNA synthetase
4190	 34.64	0	4159908..4160822	-	304	24216890	-	LA4191	-	hypothetical protein
4191	 30.23	0	4160836..4160964	+	42	24216891	-	LA4192	-	hypothetical protein
4192	 36.79	0	4161026..4162414	+	462	24216892	gyrA2	LA4193	-	DNA gyrase subunit A
4193	 37.36	0	4162411..4164546	+	711	24216893	gyrB2	LA4194	-	DNA gyrase B subunit
4194	 36.92	0	4164607..4165080	+	157	24216894	-	LA4195	-	hypothetical protein
4195	 27.23	-1	4165364..4166215	+	283	24216895	-	LA4196	-	hypothetical protein
4196	 32.48	0	4166235..4166351	+	38	24216896	-	LA4197	-	hypothetical protein
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.