IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4063	 28.43	-1	4037645..4038052	+	135	24216763	-	LA4064	-	hypothetical protein
4064	 31.91	0	4038049..4038819	+	256	24216764	-	LA4065	-	two-component response regulator
4065	 34.96	0	4038816..4039490	-	224	24216765	-	LA4066	-	hypothetical protein
4066	 42.27	+1	4039585..4040781	-	398	24216766	icd1	LA4067	-	isocitrate dehydrogenase
4067	 35.63	0	4040850..4041503	-	217	24216767	-	LA4068	-	hypothetical protein
4068	 32.66	0	4041687..4042133	+	148	24216768	-	LA4069	-	hypothetical protein
4069	 34.23	0	4042165..4043280	+	371	24216769	-	LA4070	-	hypothetical protein
4070	 36.78	0	4043737..4044810	+	357	24216770	-	LA4071	-	transposase
4071	 40.00	+1	4045068..4045172	+	34	24216771	-	LA4072	-	hypothetical protein
4072	 39.85	0	4045398..4046870	-	490	24216772	-	LA4073	-	hypothetical protein
4073	 21.93	-2	4046985..4047098	-	37	24216773	-	LA4074	-	hypothetical protein
4074	 29.46	-1	4047307..4047435	-	42	24216774	-	LA4075	-	hypothetical protein
4075	 36.40	0	4047885..4048373	-	162	24216775	-	LA4076	-	hypothetical protein
4076	 27.64	-1	4048377..4048499	-	40	24216776	-	LA4077	-	hypothetical protein
4077	 36.41	0	4048522..4050309	-	595	24216777	-	LA4078	-	apolipoprotein N-acyltransferase
4078	 42.96	+1	4050560..4051858	+	432	24216778	murA	LA4079	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
4079	 38.05	0	4051855..4052511	+	218	24216779	mauM	LA4080	-	methylamine utilization ferredoxin-type protein mauM
4080	 34.68	0	4052553..4052924	+	123	24216780	-	LA4081	-	hypothetical protein
4081	 33.33	0	4054132..4054620	-	162	24216781	-	LA4082	-	hypothetical protein
4082	 33.93	0	4054630..4054965	-	111	24216782	-	LA4083	-	hypothetical protein
4083	 31.06	0	4055432..4056004	-	190	24216783	-	LA4084	-	hypothetical protein
4084	 39.39	0	4055988..4057010	-	340	24216784	-	LA4085	-	Zinc-binding dehydrogenase
4085	 37.00	0	4057007..4057333	-	108	24216785	-	LA4086	-	[2Fe-2S] ferredoxin
4086	 33.94	0	4057727..4058221	+	164	24216786	-	LA4087	-	hypothetical protein
4087	 33.94	0	4058200..4059189	+	329	24216787	-	LA4088	-	hypothetical protein
4088	 37.21	0	4059198..4060022	-	274	24216788	-	LA4089	-	PhzF family phenazine biosynthesis protein
4089	 32.48	0	4060251..4060367	+	38	24216789	-	LA4090	-	hypothetical protein
4090	 40.39	+1	4061034..4062506	-	490	24216790	purF	LA4092	-	amidophosphoribosyltransferase
4091	 35.78	0	4062449..4063714	+	421	24216791	-	LA4091	-	ribonuclease D
4092	 36.16	0	4063746..4064417	+	223	24216792	-	LA4093	-	MutT/nudix family protein
4093	 27.19	-1	4065650..4065763	-	37	24216793	-	LA4094	-	hypothetical protein
4094	 26.67	-1	4065972..4066076	-	34	24216794	-	LA4095	-	hypothetical protein
4095	 29.89	-1	4066146..4066319	+	57	24216795	-	LA4096	-	hypothetical protein
4096	 35.86	0	4066316..4066711	+	131	24216796	-	LA4097	-	hypothetical protein
4097	 35.23	0	4066711..4067289	+	192	24216797	rpoE2	LA4098	-	RNA polymerase ECF-type sigma factor
4098	 33.87	0	4067273..4067644	+	123	24216798	-	LA4099	-	hypothetical protein
4099	 31.99	0	4067641..4068087	+	148	24216799	-	LA4100	-	hypothetical protein
4100	 31.43	0	4068468..4068572	+	34	24216800	-	LA4101	-	hypothetical protein
4101	 33.33	0	4069267..4069407	-	46	24216801	-	LA4103	-	hypothetical protein
4102	 38.60	0	4069396..4070097	+	233	24216802	regX	LA4102	-	sensory transduction protein regX3
4103	 36.93	0	4070087..4071478	+	463	24216803	-	LA4104	-	two-component hybrid sensor and regulator
4104	 37.22	0	4071547..4072704	+	385	24216804	argJ	LA4105	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
4105	 33.33	0	4072685..4073989	+	434	24216805	-	LA4106	-	hypothetical protein
4106	 33.21	0	4073986..4076364	+	792	24216806	rsbP	LA4107	-	sigmaB regulation protein phosphatase 2C rsbP
4107	 31.44	0	4076718..4077404	-	228	24216807	-	LA4108	-	hypothetical protein
4108	 37.60	0	4077609..4078733	-	374	24216808	-	LA4109	-	hypothetical protein
4109	 35.69	0	4078730..4078984	-	84	24216809	-	LA4110	-	hypothetical protein
4110	 28.57	-1	4079545..4079691	+	48	24216810	-	LA4111	-	hypothetical protein
4111	 36.19	0	4079753..4079857	+	34	24216811	-	LA4112	-	hypothetical protein
4112	 34.45	0	4080320..4080676	-	118	24216812	-	LA4113	-	hypothetical protein
4113	 36.42	0	4080696..4082219	-	507	24216813	-	LA4114	-	3-keto-acyl-CoA thiolase
4114	 38.89	0	4082496..4082945	-	149	24216814	-	LA4115	-	MaoC family protein
4115	 27.03	-1	4083564..4083674	+	36	24216815	-	LA4116	-	hypothetical protein
4116	 35.51	0	4083775..4085379	-	534	24216816	-	LA4117	-	Acyl-CoA dehydrogenase
4117	 22.76	-2	4085774..4085896	-	40	24216817	-	LA4118	-	hypothetical protein
4118	 37.19	0	4086408..4088453	-	681	24216818	ligA	LA4119	-	DNA ligase
4119	 36.73	0	4088472..4089443	-	323	24216819	-	LA4120	-	M23/M37 familypeptidase
4120	 35.28	0	4089724..4090083	-	119	24216820	-	LA4121	-	hypothetical protein
4121	 33.92	0	4090101..4090610	-	169	24216821	rpoE3	LA4122	-	RNA polymerase ECF-type sigma factor
4122	 37.80	0	4090618..4091199	-	193	24216822	-	LA4123	-	hypothetical protein
4123	 35.50	0	4091332..4092024	+	230	24216823	sanA	LA4124	-	SanA protein
4124	 22.48	-2	4092842..4092970	+	42	24216824	-	LA4125	-	hypothetical protein
4125	 30.60	0	4093319..4094452	-	377	24216825	-	LA4126	-	sensory transduction histidine kinase
4126	 32.10	0	4094657..4095787	-	376	24216826	-	LA4127	-	sensory transduction histidine kinase
4127	 38.26	0	4096183..4096527	-	114	24216827	-	LA4128	-	lipoprotein
4128	 37.23	0	4096524..4097036	-	170	24216828	-	LA4129	-	ankyrin repeat-containing protein
4129	 30.30	0	4097575..4098102	+	175	24216829	-	LA4130	-	LuxR family transcriptional regulator
4130	 34.75	0	4098661..4100640	+	659	24216830	-	LA4131	-	M48 family peptidase
4131	 40.12	+1	4101122..4101283	-	53	24216831	-	LA4132	-	hypothetical protein
4132	 33.33	0	4101613..4102140	+	175	24216832	-	LA4133	-	Appr-1''-p processing enzyme family protein
4133	 27.19	-1	4102557..4102670	+	37	24216833	-	LA4134	-	hypothetical protein
4134	 41.48	+1	4102858..4105446	-	862	24216834	-	LA4135	-	hypothetical protein
4135	 38.76	0	4106184..4106312	-	42	24216835	-	LA4136	-	hypothetical protein
4136	 45.00	+2	4107516..4108055	-	179	24216836	-	LA4137	-	NADPH-dependent FMN reductase
4137	 42.33	+1	4108362..4109672	+	436	24216837	had	LA4138	-	3-hydroxyacyl-CoA dehydrogenase
4138	 43.13	+1	4109688..4110953	+	421	24216838	fadA	LA4139	-	acetyl-CoA acetyltransferase
4139	 35.62	0	4110956..4111393	+	145	24216839	-	LA4140	-	hypothetical protein
4140	 44.44	+1	4111947..4112099	+	50	24216840	-	LA4141	-	hypothetical protein
4141	 38.63	0	4112124..4113086	-	320	24216841	-	LA4142	-	lipoprotein
4142	 38.81	0	4113616..4114491	+	291	24216842	-	LA4143	-	lipoprotein
4143	 38.54	0	4114558..4114749	-	63	24216843	-	LA4144	-	hypothetical protein
4144	 31.51	0	4114883..4115101	-	72	24216844	-	LA4145	-	hypothetical protein
4145	 31.51	0	4116081..4116959	+	292	24216845	-	LA4146	-	hypothetical protein
4146	 27.03	-1	4117153..4117263	-	36	24216846	-	LA4147	-	hypothetical protein
4147	 43.00	+1	4117558..4117764	+	68	24216847	-	LA4148	-	hypothetical protein
4148	 35.99	0	4118316..4118729	-	137	24216848	-	LA4149	-	4-hydroxybenzoyl-CoA thioesterase
4149	 35.28	0	4118731..4119756	-	341	24216849	pheS	LA4150	-	phenylalanyl-tRNA synthetase alpha chain
4150	 36.77	0	4119753..4121150	-	465	24216850	-	LA4151	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase
4151	 33.66	0	4121147..4121764	-	205	24216851	-	LA4152	-	hypothetical protein
4152	 35.69	0	4121751..4122854	-	367	24216852	-	LA4153	-	hypothetical protein
4153	 36.83	0	4122851..4124878	-	675	24216853	-	LA4154	-	hypothetical protein
4154	 34.57	0	4124866..4125594	-	242	24216854	-	LA4155	-	ABC transporter permease
4155	 37.74	0	4125599..4126528	-	309	24216855	-	LA4156	-	ABC transporter ATP-binding protein
4156	 35.14	0	4126916..4127137	-	73	24216856	-	LA4157	-	hypothetical protein
4157	 35.99	0	4127119..4127682	-	187	24216857	-	LA4158	-	hypothetical protein
4158	 37.74	0	4127844..4129001	+	385	24216858	-	LA4159	-	malonyl-CoA transacylase
4159	 32.52	0	4129340..4130563	+	407	24216859	-	LA4160	-	hypothetical protein
4160	 37.72	0	4130892..4133237	-	781	24216860	-	LA4161	-	thermolysin
4161	 27.12	-1	4133234..4133410	-	58	24216861	-	LA4162	-	hypothetical protein
4162	 32.16	0	4133712..4133882	-	56	24216862	-	LA4163	-	hypothetical protein
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.