IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3938	 38.79	0	3914415..3915422	-	335	24216638	gpsA2	LA3939	-	glycerol-3-phosphate dehydrogenase
3939	 33.19	0	3915551..3916237	+	228	24216639	-	LA3940	-	hypothetical protein
3940	 31.88	0	3916241..3916378	-	45	24216640	-	LA3942	-	hypothetical protein
3941	 37.28	0	3916364..3917350	+	328	24216641	-	LA3941	-	phosphoesterase
3942	 35.55	0	3917353..3918030	+	225	24216642	-	LA3943	-	hypothetical protein
3943	 37.38	0	3918027..3918446	+	139	24216643	-	LA3944	-	hypothetical protein
3944	 38.07	0	3918427..3920601	+	724	24216644	recG	LA3945	-	ATP-dependent DNA helicase recG
3945	 37.36	0	3922088..3922435	-	115	24216645	-	LA3946	-	hypothetical protein
3946	 34.42	0	3922636..3923370	+	244	24216646	-	LA3947	-	D-alanyl-D-alanine carboxypeptidase family protein
3947	 40.43	+1	3923371..3924342	-	323	24216647	galE4	LA3948	-	UDP-glucose 4-epimerase
3948	 38.59	0	3924339..3925118	-	259	24216648	lpxA	LA3949	-	UDP-N-acetylglucosamine acyltransferase
3949	 37.93	0	3925265..3925612	+	115	24216649	-	LA3950	-	hypothetical protein
3950	 34.67	0	3925793..3925942	-	49	24216650	-	LA3951	-	hypothetical protein
3951	 38.37	0	3925982..3926914	+	310	24216651	-	LA3952	-	huntingtin interacting protein E-like protein
3952	 35.09	0	3926943..3927056	-	37	24216652	-	LA3953	-	hypothetical protein
3953	 36.71	0	3928076..3928786	+	236	24216653	-	LA3954	-	hypothetical protein
3954	 38.32	0	3928771..3929151	+	126	24216654	-	LA3955	-	transposase
3955	 36.78	0	3929476..3930549	+	357	24216655	-	LA3956	-	transposase
3956	 40.91	+1	3931006..3932127	-	373	24216656	aroF	LA3957	-	DAHP synthase
3957	 39.47	0	3932202..3932999	-	265	24216657	panB	LA3958	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
3958	 33.78	0	3932983..3933432	-	149	24216658	folK	LA3959	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
3959	 39.74	0	3933429..3934286	-	285	24216659	dnaC	LA3960	-	DNA replication protein C
3960	 40.07	+1	3934973..3935893	+	306	24216660	-	LA3961	-	hypothetical protein
3961	 38.85	0	3936747..3937145	+	132	24216661	-	LA3962	-	hypothetical protein
3962	 26.85	-1	3937406..3937513	+	35	24216662	-	LA3963	-	hypothetical protein
3963	 40.96	+1	3937840..3938862	-	340	24216663	-	LA3964	-	GDP-mannose 4,6 dehydratase
3964	 38.96	0	3938906..3940327	-	473	24216664	-	LA3965	-	hypothetical protein
3965	 38.26	0	3940766..3941293	-	175	24216665	-	LA3966	-	hypothetical protein
3966	 26.83	-1	3941328..3941450	+	40	24216666	-	LA3967	-	hypothetical protein
3967	 51.11	+2	3941461..3941595	-	44	24216667	-	LA3968	-	hypothetical protein
3968	 36.27	0	3942065..3943390	+	441	24216668	-	LA3969	-	adenosine deaminase
3969	 38.34	0	3943556..3944473	+	305	24216669	-	LA3970	-	hypothetical protein
3970	 35.83	0	3944473..3946272	+	599	24216670	-	LA3971	-	Na+-transporting ATP synthase
3971	 37.27	0	3946285..3946995	+	236	24216671	ktrA	LA3972	-	K+ transport systems, NAD-binding component
3972	 39.42	0	3946980..3948047	-	355	24216672	kvb2	LA3973	-	aldo/keto reductase family protein
3973	 32.17	0	3948529..3949731	+	400	24216673	-	LA3974	-	hypothetical protein
3974	 36.11	0	3949757..3950044	-	95	24216674	acyp	LA3975	-	acylphosphatase
3975	 40.18	+1	3950034..3950471	-	145	24216675	-	LA3976	-	globin-like protein
3976	 37.63	0	3950471..3950959	-	162	24216676	invA	LA3977	-	invasion-associated protein A
3977	 36.34	0	3951505..3951936	+	143	24216677	-	LA3978	-	SET family protein
3978	 26.09	-1	3951958..3952095	-	45	24216678	-	LA3979	-	hypothetical protein
3979	 35.23	0	3952359..3953147	-	262	24216679	glpQ2	LA3980	-	glycerophosphoryl diester phosphodiesterase
3980	 31.82	0	3953158..3953289	+	43	24216680	-	LA3981	-	hypothetical protein
3981	 38.80	0	3953282..3953665	-	127	24216681	-	LA3982	-	hypothetical protein
3982	 36.69	0	3954536..3955609	+	357	24216682	-	LA3983	-	transposase
3983	 40.00	+1	3955671..3955805	-	44	24216683	-	LA3984	-	hypothetical protein
3984	 32.79	0	3956038..3957138	-	366	24216684	mltA	LA3985	-	membrane-bound lytic murein transglycosylase A precursor
3985	 31.21	0	3957241..3958845	-	534	24216685	-	LA3986	-	AraC family transcriptional regulator
3986	 32.14	0	3959427..3959927	-	166	24216686	-	LA3987	-	hypothetical protein
3987	 37.41	0	3960871..3962340	-	489	24216687	-	LA3988	-	potassium/proton antiporter
3988	 27.08	-1	3962637..3962780	-	47	24216688	-	LA3989	-	hypothetical protein
3989	 35.19	0	3962817..3963032	-	71	24216689	-	LA3990	-	hypothetical protein
3990	 32.46	0	3963054..3963509	-	151	24216690	-	LA3991	-	acetyltransferase
3991	 27.13	-1	3963592..3963720	-	42	24216691	-	LA3992	-	hypothetical protein
3992	 38.00	0	3964179..3965465	-	428	24216692	-	LA3993	-	hypothetical protein
3993	 35.57	0	3965573..3967270	+	565	24216693	-	LA3994	-	methyltransferase
3994	 32.93	0	3967396..3969858	-	820	24216694	-	LA3996	-	two-component hybrid sensor and regulator
3995	 23.70	-2	3969833..3969967	+	44	24216695	-	LA3995	-	hypothetical protein
3996	 37.96	0	3970218..3971297	-	359	24216696	-	LA3997	-	GTPase
3997	 38.82	0	3972263..3975670	+	1135	24216697	-	LA3998	-	cholesterol oxidase
3998	 40.60	+1	3975717..3977285	+	522	24216698	choB	LA3999	-	cholesterol oxidase precursor
3999	 36.44	0	3977576..3978316	+	246	24216699	-	LA4000	-	hypothetical protein
4000	 26.13	-1	3978649..3978759	-	36	24216700	-	LA4001	-	hypothetical protein
4001	 32.80	0	3979052..3979237	-	61	24216701	-	LA4002	-	hypothetical protein
4002	 38.04	0	3979254..3979763	-	169	24216702	-	LA4003	-	hypothetical protein
4003	 32.56	0	3980227..3981903	+	558	24216703	sph3	LA4004	-	sphingomyelinase C precursor
4004	 15.22	-2	3982138..3982275	-	45	24216704	-	LA4006	-	hypothetical protein
4005	 34.41	0	3982264..3982914	+	216	24216705	-	LA4005	-	hypothetical protein
4006	 39.86	0	3983902..3984039	+	45	24216706	-	LA4007	-	hypothetical protein
4007	 38.44	0	3984244..3988434	-	1396	24216707	cyaA16	LA4008	-	adenylate cyclase
4008	 37.68	0	3988742..3990466	-	574	24216708	choA	LA4009	-	cholesterol oxidase precursor
4009	 32.89	0	3990495..3990941	-	148	24216709	-	LA4010	-	hypothetical protein
4010	 38.11	0	3990926..3991741	-	271	24216710	-	LA4011	-	hypothetical protein
4011	 31.43	0	3991876..3991980	-	34	24216711	-	LA4012	-	hypothetical protein
4012	 37.86	0	3993138..3994064	+	308	24216712	czcD2	LA4013	-	cobalt-zinc-cadmium resistance protein czcD
4013	 30.00	-1	3994398..3994517	-	39	24216713	-	LA4014	-	hypothetical protein
4014	 36.11	0	3994551..3995018	-	155	24216714	-	LA4016	-	hypothetical protein
4015	 28.96	-1	3995011..3995193	+	60	24216715	-	LA4015	-	hypothetical protein
4016	 31.28	0	3995590..3996222	-	210	24216716	-	LA4017	-	penicillin-binding protein 1A
4017	 22.81	-2	3996275..3996388	+	37	24216717	-	LA4018	-	hypothetical protein
4018	 36.17	0	3996670..3997338	-	222	24216718	ribD2	LA4019	-	riboflavin biosynthesis protein D
4019	 36.40	0	3997335..3997562	-	75	24216719	-	LA4021	-	bacterioferritin-associated ferredoxin protein
4020	 29.82	-1	3997539..3997652	+	37	24216720	-	LA4020	-	hypothetical protein
4021	 38.37	0	3997712..3998644	+	310	24216721	-	LA4022	-	MDR-type permease
4022	 30.48	0	3999166..3999375	+	69	24216722	-	LA4023	-	hypothetical protein
4023	 33.33	0	3999493..3999597	+	34	24216723	-	LA4024	-	hypothetical protein
4024	 34.77	0	4000122..4000958	-	278	24216724	-	LA4025	-	hypothetical protein
4025	 34.75	0	4000961..4002229	+	422	24216725	-	LA4026	-	hypothetical protein
4026	 36.24	0	4002303..4002887	+	194	24216726	-	LA4027	-	cytochrome oxidase subunit IV
4027	 29.17	-1	4002928..4003047	+	39	24216727	-	LA4028	-	hypothetical protein
4028	 36.67	0	4003604..4003753	-	49	24216728	-	LA4029	-	hypothetical protein
4029	 30.41	0	4003914..4004597	+	227	24216729	-	LA4030	-	hypothetical protein
4030	 25.36	-1	4005222..4005359	+	45	24216730	-	LA4031	-	hypothetical protein
4031	 30.02	-1	4005402..4006004	+	200	24216731	-	LA4032	-	hypothetical protein
4032	 18.52	-2	4006475..4006582	-	35	24216732	-	LA4033	-	hypothetical protein
4033	 38.60	0	4006970..4007539	-	189	24216733	-	LA4034	-	transferase family protein
4034	 35.60	0	4008093..4010519	-	808	24216734	pheT	LA4035	-	phenylalanyl-tRNA synthetase beta chain
4035	 35.62	0	4010598..4013444	-	948	24216735	-	LA4036	-	ATP-dependent RNA helicase
4036	 37.70	0	4013445..4014176	-	243	24216736	-	LA4037	-	MoaA family Fe-S oxidoreductase
4037	 32.56	0	4014268..4014396	-	42	24216737	-	LA4038	-	hypothetical protein
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.