IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3898	 36.20	0	3868659..3869042	-	127	24216598	-	LA3899	-	transposase
3899	 42.68	+1	3869011..3869406	-	131	24216599	-	LA3900	-	hypothetical protein
3900	 30.16	-1	3869877..3870002	-	41	24216600	-	LA3901	-	hypothetical protein
3901	 29.71	-1	3870155..3870292	-	45	24216601	-	LA3902	-	hypothetical protein
3902	 36.45	0	3870494..3871360	-	288	24216602	-	LA3903	-	metallo-beta-lactamase superfamily protein
3903	 30.89	0	3871444..3871566	-	40	24216603	-	LA3904	-	hypothetical protein
3904	 43.01	+1	3872367..3873575	+	402	24216604	-	LA3905	-	DegT/DnrJ/EryC3/StrS family protein
3905	 24.24	-2	3873756..3873887	-	43	24216605	-	LA3906	-	hypothetical protein
3906	 30.60	0	3874833..3875234	-	133	24216606	-	LA3907	-	hypothetical protein
3907	 25.71	-1	3875331..3875435	+	34	24216607	-	LA3908	-	hypothetical protein
3908	 33.40	0	3875890..3877404	+	504	24216608	-	LA3909	-	hypothetical protein
3909	 33.45	0	3878000..3878872	-	290	24216609	-	LA3910	-	hypothetical protein
3910	 39.06	0	3878916..3879509	+	197	24216610	-	LA3911	-	hypothetical protein
3911	 36.99	0	3879560..3880435	+	291	24216611	-	LA3912	-	hypothetical protein
3912	 32.80	0	3881083..3881649	-	188	24216612	-	LA3913	-	hypothetical protein
3913	 29.58	-1	3882854..3883066	-	70	24216613	-	LA3915	-	hypothetical protein
3914	 33.16	0	3883055..3884215	+	386	24216614	-	LA3914	-	AraC family transcriptional regulator
3915	 34.33	0	3885750..3886754	-	334	24216615	-	LA3916	-	hypothetical protein
3916	 38.82	0	3886829..3887338	-	169	24216616	-	LA3917	-	hypothetical protein
3917	 36.73	0	3887449..3889596	+	715	24216617	metG	LA3918	-	methionyl-tRNA synthetase
3918	 29.17	-1	3889606..3889725	+	39	24216618	-	LA3919	-	hypothetical protein
3919	 33.33	0	3889694..3889810	-	38	24216619	-	LA3920	-	hypothetical protein
3920	 35.61	0	3890562..3893192	+	876	24216620	glnD	LA3921	-	uridylyltransferase
3921	 32.42	0	3893236..3893781	-	181	24216621	-	LA3922	-	hypothetical protein
3922	 35.65	0	3893797..3894531	-	244	24216622	-	LA3923	-	hypothetical protein
3923	 39.96	+1	3895004..3895969	-	321	24216623	-	LA3924	-	NAD(P)-dependent steroid dehydrogenase
3924	 27.03	-1	3896469..3896579	+	36	24216624	-	LA3925	-	hypothetical protein
3925	 38.45	0	3896933..3900100	+	1055	24216625	-	LA3926	-	transmembrane efflux pump protein
3926	 32.74	0	3900728..3902758	+	676	24216626	tolC	LA3927	-	Outer membrane protein tolC precursor
3927	 39.43	0	3902801..3904588	+	595	24216627	fadE2	LA3928	-	acyl-CoA dehydrogenase
3928	 35.26	0	3905449..3906432	+	327	24216628	-	LA3929	-	GGDEF domain-containing protein
3929	 35.95	0	3906651..3907643	-	330	24216629	murB	LA3930	-	UDP-N-acetylenolpyruvoylglucosamine reductase
3930	 41.27	+1	3907703..3907828	+	41	24216630	-	LA3931	-	hypothetical protein
3931	 35.90	0	3907787..3907903	-	38	24216631	-	LA3932	-	hypothetical protein
3932	 27.36	-1	3908335..3908535	-	66	24216632	-	LA3933	-	hypothetical protein
3933	 36.43	0	3908616..3908873	+	85	24216633	-	LA3934	-	hypothetical protein
3934	 36.39	0	3909009..3909695	-	228	24216634	-	LA3935	-	pantothenate metabolism flavoprotein-like protein
3935	 40.88	+1	3909712..3910254	-	180	24216635	-	LA3936	-	phosphopantothenoylcysteine decarboxylase
3936	 36.70	0	3910270..3911604	-	444	24216636	hlyC	LA3937	-	hemolysin-like protein
3937	 34.18	0	3911824..3914409	-	861	24216637	-	LA3938	-	hypothetical protein
3938	 38.79	0	3914415..3915422	-	335	24216638	gpsA2	LA3939	-	glycerol-3-phosphate dehydrogenase
3939	 33.19	0	3915551..3916237	+	228	24216639	-	LA3940	-	hypothetical protein
3940	 31.88	0	3916241..3916378	-	45	24216640	-	LA3942	-	hypothetical protein
3941	 37.28	0	3916364..3917350	+	328	24216641	-	LA3941	-	phosphoesterase
3942	 35.55	0	3917353..3918030	+	225	24216642	-	LA3943	-	hypothetical protein
3943	 37.38	0	3918027..3918446	+	139	24216643	-	LA3944	-	hypothetical protein
3944	 38.07	0	3918427..3920601	+	724	24216644	recG	LA3945	-	ATP-dependent DNA helicase recG
3945	 37.36	0	3922088..3922435	-	115	24216645	-	LA3946	-	hypothetical protein
3946	 34.42	0	3922636..3923370	+	244	24216646	-	LA3947	-	D-alanyl-D-alanine carboxypeptidase family protein
3947	 40.43	+1	3923371..3924342	-	323	24216647	galE4	LA3948	-	UDP-glucose 4-epimerase
3948	 38.59	0	3924339..3925118	-	259	24216648	lpxA	LA3949	-	UDP-N-acetylglucosamine acyltransferase
3949	 37.93	0	3925265..3925612	+	115	24216649	-	LA3950	-	hypothetical protein
3950	 34.67	0	3925793..3925942	-	49	24216650	-	LA3951	-	hypothetical protein
3951	 38.37	0	3925982..3926914	+	310	24216651	-	LA3952	-	huntingtin interacting protein E-like protein
3952	 35.09	0	3926943..3927056	-	37	24216652	-	LA3953	-	hypothetical protein
3953	 36.71	0	3928076..3928786	+	236	24216653	-	LA3954	-	hypothetical protein
3954	 38.32	0	3928771..3929151	+	126	24216654	-	LA3955	-	transposase
3955	 36.78	0	3929476..3930549	+	357	24216655	-	LA3956	-	transposase
3956	 40.91	+1	3931006..3932127	-	373	24216656	aroF	LA3957	-	DAHP synthase
3957	 39.47	0	3932202..3932999	-	265	24216657	panB	LA3958	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
3958	 33.78	0	3932983..3933432	-	149	24216658	folK	LA3959	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
3959	 39.74	0	3933429..3934286	-	285	24216659	dnaC	LA3960	-	DNA replication protein C
3960	 40.07	+1	3934973..3935893	+	306	24216660	-	LA3961	-	hypothetical protein
3961	 38.85	0	3936747..3937145	+	132	24216661	-	LA3962	-	hypothetical protein
3962	 26.85	-1	3937406..3937513	+	35	24216662	-	LA3963	-	hypothetical protein
3963	 40.96	+1	3937840..3938862	-	340	24216663	-	LA3964	-	GDP-mannose 4,6 dehydratase
3964	 38.96	0	3938906..3940327	-	473	24216664	-	LA3965	-	hypothetical protein
3965	 38.26	0	3940766..3941293	-	175	24216665	-	LA3966	-	hypothetical protein
3966	 26.83	-1	3941328..3941450	+	40	24216666	-	LA3967	-	hypothetical protein
3967	 51.11	+2	3941461..3941595	-	44	24216667	-	LA3968	-	hypothetical protein
3968	 36.27	0	3942065..3943390	+	441	24216668	-	LA3969	-	adenosine deaminase
3969	 38.34	0	3943556..3944473	+	305	24216669	-	LA3970	-	hypothetical protein
3970	 35.83	0	3944473..3946272	+	599	24216670	-	LA3971	-	Na+-transporting ATP synthase
3971	 37.27	0	3946285..3946995	+	236	24216671	ktrA	LA3972	-	K+ transport systems, NAD-binding component
3972	 39.42	0	3946980..3948047	-	355	24216672	kvb2	LA3973	-	aldo/keto reductase family protein
3973	 32.17	0	3948529..3949731	+	400	24216673	-	LA3974	-	hypothetical protein
3974	 36.11	0	3949757..3950044	-	95	24216674	acyp	LA3975	-	acylphosphatase
3975	 40.18	+1	3950034..3950471	-	145	24216675	-	LA3976	-	globin-like protein
3976	 37.63	0	3950471..3950959	-	162	24216676	invA	LA3977	-	invasion-associated protein A
3977	 36.34	0	3951505..3951936	+	143	24216677	-	LA3978	-	SET family protein
3978	 26.09	-1	3951958..3952095	-	45	24216678	-	LA3979	-	hypothetical protein
3979	 35.23	0	3952359..3953147	-	262	24216679	glpQ2	LA3980	-	glycerophosphoryl diester phosphodiesterase
3980	 31.82	0	3953158..3953289	+	43	24216680	-	LA3981	-	hypothetical protein
3981	 38.80	0	3953282..3953665	-	127	24216681	-	LA3982	-	hypothetical protein
3982	 36.69	0	3954536..3955609	+	357	24216682	-	LA3983	-	transposase
3983	 40.00	+1	3955671..3955805	-	44	24216683	-	LA3984	-	hypothetical protein
3984	 32.79	0	3956038..3957138	-	366	24216684	mltA	LA3985	-	membrane-bound lytic murein transglycosylase A precursor
3985	 31.21	0	3957241..3958845	-	534	24216685	-	LA3986	-	AraC family transcriptional regulator
3986	 32.14	0	3959427..3959927	-	166	24216686	-	LA3987	-	hypothetical protein
3987	 37.41	0	3960871..3962340	-	489	24216687	-	LA3988	-	potassium/proton antiporter
3988	 27.08	-1	3962637..3962780	-	47	24216688	-	LA3989	-	hypothetical protein
3989	 35.19	0	3962817..3963032	-	71	24216689	-	LA3990	-	hypothetical protein
3990	 32.46	0	3963054..3963509	-	151	24216690	-	LA3991	-	acetyltransferase
3991	 27.13	-1	3963592..3963720	-	42	24216691	-	LA3992	-	hypothetical protein
3992	 38.00	0	3964179..3965465	-	428	24216692	-	LA3993	-	hypothetical protein
3993	 35.57	0	3965573..3967270	+	565	24216693	-	LA3994	-	methyltransferase
3994	 32.93	0	3967396..3969858	-	820	24216694	-	LA3996	-	two-component hybrid sensor and regulator
3995	 23.70	-2	3969833..3969967	+	44	24216695	-	LA3995	-	hypothetical protein
3996	 37.96	0	3970218..3971297	-	359	24216696	-	LA3997	-	GTPase
3997	 38.82	0	3972263..3975670	+	1135	24216697	-	LA3998	-	cholesterol oxidase
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.