IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3800	 39.33	0	3764133..3765965	+	610	24216500	glmS	LA3801	-	glucosamine--fructose-6-phosphate aminotransferase
3801	 39.26	0	3765971..3767017	+	348	24216501	rfbA	LA3802	-	glucose-1-phosphate thymidylyltransferase
3802	 40.35	+1	3767034..3768644	+	536	24216502	pccB2	LA3803	-	propionyl-CoA carboxylase beta chain
3803	 31.53	0	3768826..3768936	+	36	24216503	-	LA3804	-	hypothetical protein
3804	 29.47	-1	3769783..3769989	+	68	24216504	-	LA3805	-	hypothetical protein
3805	 42.38	+1	3770039..3771331	+	430	24216505	amtB	LA3806	-	ammonium transporter
3806	 37.97	0	3771370..3771714	+	114	24216506	glnB	LA3807	-	nitrogen regulatory protein P-II
3807	 28.83	-1	3772127..3772237	-	36	24216507	-	LA3808	-	hypothetical protein
3808	 39.77	0	3772247..3774280	+	677	24216508	-	LA3809	-	hypothetical protein
3809	 40.00	+1	3774837..3775031	+	64	24216509	-	LA3810	-	hypothetical protein
3810	 35.94	0	3775039..3776535	+	498	24216510	speE1	LA3811	-	spermidine synthase
3811	 30.59	0	3776572..3776790	-	72	24216511	-	LA3812	-	hypothetical protein
3812	 38.89	0	3776793..3776918	-	41	24216512	-	LA3813	-	hypothetical protein
3813	 45.44	+2	3777281..3777784	-	167	24216513	-	LA3814	-	hypothetical protein
3814	 30.56	0	3777921..3778064	-	47	24216514	-	LA3815	-	hypothetical protein
3815	 30.77	0	3778334..3778723	+	129	24216515	-	LA3816	-	hypothetical protein
3816	 31.25	0	3778779..3778922	+	47	24216516	-	LA3817	-	hypothetical protein
3817	 35.24	0	3779507..3779977	-	156	24216517	-	LA3818	-	hypothetical protein
3818	 40.35	+1	3779974..3781941	-	655	24216518	ftsH	LA3819	-	cell division protein ftsH
3819	 36.35	0	3782101..3782664	-	187	24216519	-	LA3820	-	peptidyl-tRNA hydrolase
3820	 41.31	+1	3782711..3783349	-	212	24216520	rplY	LA3821	-	50S ribosomal protein L25/general stress protein Ctc
3821	 39.30	0	3783367..3784305	-	312	24216521	prsA	LA3822	-	ribose-phosphate pyrophosphokinase
3822	 40.45	+1	3784302..3785060	-	252	24216522	glmU	LA3823	-	UDP-N-acetylglucosamine pyrophosphorylase
3823	 37.92	0	3785166..3786059	-	297	24216523	ychB	LA3824	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
3824	 35.13	0	3786562..3787506	-	314	24216524	-	LA3825	-	transcription regulator
3825	 32.62	0	3788816..3788956	+	46	24216525	-	LA3826	-	hypothetical protein
3826	 30.81	0	3790365..3790919	+	184	24216526	-	LA3827	-	hypothetical protein
3827	 28.52	-1	3791404..3791673	+	89	24216527	-	LA3828	-	hypothetical protein
3828	 37.20	0	3792027..3792362	-	111	24216528	-	LA3829	-	hypothetical protein
3829	 36.96	0	3794099..3795172	+	357	24216529	-	LA3830	-	transposase
3830	 35.71	0	3795165..3795332	-	55	24216530	-	LA3831	-	hypothetical protein
3831	 33.00	0	3795646..3796251	-	201	24216531	-	LA3832	-	DNA-3-methyladenine glycosidase I tag
3832	 37.38	0	3796825..3797838	-	337	24216532	-	LA3833	-	hypothetical protein
3833	 36.76	0	3798233..3799660	+	475	24216533	-	LA3834	-	hypothetical protein
3834	 41.92	+1	3799811..3800101	-	96	24216534	-	LA3835	-	hypothetical protein
3835	 25.45	-1	3800475..3800639	+	54	24216535	-	LA3836	-	hypothetical protein
3836	 34.29	0	3800804..3800908	+	34	24216536	-	LA3837	-	hypothetical protein
3837	 36.69	0	3801488..3802828	-	446	24216537	-	LA3838	-	hypothetical protein
3838	 40.29	+1	3803664..3804209	-	181	24216538	-	LA3839	-	phosphatidylethanolamine-binding family protein
3839	 25.19	-2	3804293..3804427	-	44	24216539	-	LA3840	-	hypothetical protein
3840	 25.64	-1	3804577..3804693	+	38	24216540	-	LA3841	-	hypothetical protein
3841	 33.33	0	3805898..3806065	-	55	24216541	-	LA3842	-	hypothetical protein
3842	 35.95	0	3806148..3808055	+	635	24216542	cyaA15	LA3843	-	adenylate cyclase
3843	 34.07	0	3808155..3808289	+	44	24216543	-	LA3844	-	hypothetical protein
3844	 33.97	0	3808608..3809240	-	210	24216544	-	LA3845	-	TetR family transcriptional regulator
3845	 39.58	0	3809347..3812598	-	1083	24216545	-	LA3846	-	hypothetical protein
3846	 30.00	-1	3812836..3812985	+	49	24216546	-	LA3847	-	hypothetical protein
3847	 37.80	0	3814294..3815010	-	238	24216547	-	LA3848	-	lipoprotein
3848	 33.88	0	3815020..3815754	-	244	24216548	-	LA3849	-	hypothetical protein
3849	 30.95	0	3815751..3815876	-	41	24216549	-	LA3850	-	hypothetical protein
3850	 33.33	0	3816177..3817184	+	335	24216550	-	LA3851	-	hydrolase of the alpha/beta-hydrolase fold
3851	 25.69	-1	3817158..3817301	-	47	24216551	-	LA3852	-	hypothetical protein
3852	 31.38	0	3817372..3818241	+	289	24216552	-	LA3853	-	hypothetical protein
3853	 39.76	0	3819181..3819600	-	139	24216553	-	LA3854	-	hypothetical protein
3854	 40.18	+1	3819673..3820578	-	301	24216554	-	LA3855	-	Pirin-related protein
3855	 31.01	0	3820629..3821102	+	157	24216555	-	LA3856	-	hypothetical protein
3856	 39.30	0	3821169..3821537	+	122	24216556	-	LA3857	-	hypothetical protein
3857	 34.16	0	3821522..3822844	+	440	24216557	-	LA3858	-	two-component hybrid sensor and regulator
3858	 25.69	-1	3823107..3823250	+	47	24216558	-	LA3859	-	hypothetical protein
3859	 33.33	0	3823345..3823467	-	40	24216559	-	LA3860	-	hypothetical protein
3860	 38.58	0	3823530..3824177	-	215	24216560	-	LA3861	-	hypothetical protein
3861	 35.89	0	3824231..3824974	-	247	24216561	-	LA3862	-	hypothetical protein
3862	 34.98	0	3824971..3825699	-	242	24216562	coaE	LA3863	-	dephospho-CoA kinase
3863	 28.79	-1	3826107..3826304	-	65	24216563	-	LA3864	-	hypothetical protein
3864	 29.46	-1	3826743..3826871	+	42	24216564	-	LA3865	-	hypothetical protein
3865	 20.95	-2	3826956..3827060	-	34	24216565	-	LA3866	-	hypothetical protein
3866	 37.60	0	3827155..3828465	+	436	24216566	-	LA3867	-	lipoprotein
3867	 37.10	0	3828548..3829609	+	353	24216567	-	LA3868	-	sensory transduction histidine kinase
3868	 37.65	0	3829606..3830277	+	223	24216568	-	LA3869	-	two-component response regulator transcriptional regulator protein
3869	 38.38	0	3831203..3832867	+	554	24216569	-	LA3870	-	hypothetical protein
3870	 37.55	0	3833477..3836629	-	1050	24216570	czcA5	LA3871	-	cation efflux system protein CZCA
3871	 39.62	0	3837244..3838197	+	317	24216571	sppA3	LA3872	-	signal peptide peptidase sppA
3872	 34.83	0	3838204..3838803	+	199	24216572	-	LA3873	-	hypothetical protein
3873	 38.51	0	3838800..3839552	+	250	24216573	surE	LA3874	-	stationary-phase survival protein surE-like protein
3874	 19.05	-2	3840066..3840170	-	34	24216574	-	LA3875	-	hypothetical protein
3875	 32.20	0	3840493..3841200	+	235	24216575	-	LA3876	-	TPR repeat-containing protein
3876	 32.61	0	3841970..3842245	-	91	24216576	-	LA3877	-	hypothetical protein
3877	 36.59	0	3842532..3842654	+	40	24216577	-	LA3878	-	hypothetical protein
3878	 35.30	0	3842661..3843575	+	304	24216578	-	LA3879	-	hypothetical protein
3879	 30.83	0	3843632..3843751	-	39	24216579	-	LA3880	-	hypothetical protein
3880	 42.98	+1	3844076..3847681	-	1201	24216580	-	LA3881	-	hypothetical protein
3881	 36.87	0	3849260..3850333	+	357	24216581	-	LA3882	-	transposase
3882	 35.76	0	3850548..3851165	-	205	24216582	-	LA3883	-	Uracil-DNA glycosylase
3883	 34.23	0	3851179..3851622	-	147	24216583	-	LA3884	-	anti-sigma factor antagonist
3884	 33.91	0	3851619..3852662	-	347	24216584	galK	LA3885	-	galactokinase
3885	 33.33	0	3853056..3853187	-	43	24216585	-	LA3886	-	hypothetical protein
3886	 33.33	0	3853462..3853569	-	35	24216586	-	LA3887	-	hypothetical protein
3887	 37.52	0	3854186..3855523	+	445	24216587	pgi	LA3888	-	glucose-6-phosphate isomerase
3888	 30.77	0	3856513..3856629	+	38	24216588	-	LA3889	-	hypothetical protein
3889	 35.49	0	3857065..3857943	+	292	24216589	-	LA3890	-	hypothetical protein
3890	 29.73	-1	3858252..3858362	-	36	24216590	-	LA3891	-	hypothetical protein
3891	 34.71	0	3858359..3859087	-	242	24216591	rfbM2	LA3892	-	GDP-mannose pyrophosphorylase
3892	 33.13	0	3859084..3860079	-	331	24216592	-	LA3893	-	hypothetical protein
3893	 36.35	0	3860084..3861607	-	507	24216593	-	LA3894	-	two-component hybrid sensor and regulator
3894	 35.78	0	3861636..3863960	-	774	24216594	-	LA3895	-	two-component hybrid sensor and regulator
3895	 31.86	0	3863996..3864199	-	67	24216595	-	LA3896	-	hypothetical protein
3896	 33.89	0	3864796..3865701	+	301	24216596	-	LA3897	-	alpha/beta fold family hydrolase/acetyltransferase
3897	 37.06	0	3866398..3867471	-	357	24216597	-	LA3898	-	transposase
3898	 36.20	0	3868659..3869042	-	127	24216598	-	LA3899	-	transposase
3899	 42.68	+1	3869011..3869406	-	131	24216599	-	LA3900	-	hypothetical protein
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.