IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3715	 37.70	0	3672769..3673203	-	144	24216415	-	LA3716	-	hypothetical protein
3716	 39.80	0	3673338..3673538	-	66	24216416	-	LA3717	-	hypothetical protein
3717	 35.65	0	3673787..3674737	+	316	24216417	-	LA3718	-	transposase
3718	 40.61	+1	3674766..3675425	-	219	24216418	-	LA3719	-	hypothetical protein
3719	 32.82	0	3675558..3676535	-	325	24216419	-	LA3720	-	nuclease family protein
3720	 35.71	0	3676602..3676895	-	97	24216420	-	LA3721	-	hypothetical protein
3721	 30.23	0	3677081..3678013	-	310	24216421	-	LA3722	-	lipoprotein
3722	 40.10	+1	3678080..3678286	-	68	24216422	-	LA3723	-	hypothetical protein
3723	 33.81	0	3678589..3679215	-	208	24216423	-	LA3724	-	lipoprotein
3724	 41.92	+1	3679212..3687569	-	2785	24216424	-	LA3725	-	phenazine biosynthesis family protein
3725	 42.34	+1	3687710..3689242	-	510	24216425	-	LA3726	-	hypothetical protein
3726	 32.30	0	3689460..3689942	-	160	24216426	-	LA3727	-	hypothetical protein
3727	 29.29	-1	3690273..3690470	-	65	24216427	-	LA3728	-	hypothetical protein
3728	 43.52	+1	3690505..3691044	-	179	24216428	-	LA3729	-	Fimh-like protein
3729	 41.49	+1	3691586..3694453	-	955	24216429	-	LA3730	-	lipoprotein
3730	 38.96	0	3695022..3698219	-	1065	24216430	-	LA3731	-	Fmh-like protein
3731	 34.13	0	3698624..3698749	-	41	24216431	-	LA3732	-	hypothetical protein
3732	 35.72	0	3698773..3700194	+	473	24216432	-	LA3733	-	outer membrane efflux protein
3733	 41.05	+1	3700206..3702032	+	608	24216433	-	LA3734	-	hypothetical protein
3734	 34.20	0	3702056..3702751	+	231	24216434	-	LA3735	-	lipoprotein
3735	 29.91	-1	3702753..3703394	+	213	24216435	-	LA3736	-	TPR repeat-containing protein
3736	 34.61	0	3703741..3705234	+	497	24216436	hlyD	LA3737	-	HlyD family secretion protein
3737	 33.30	0	3705231..3708311	+	1026	24216437	czcA4	LA3738	-	cobalt-zinc-cadmium resistance protein CZCA
3738	 35.44	0	3708323..3709273	+	316	24216438	-	LA3739	-	acriflavine resistance protein
3739	 29.28	-1	3709260..3711209	+	649	24216439	-	LA3740	-	hypothetical protein
3740	 34.11	0	3711139..3711909	+	256	24216440	-	LA3741	-	hypothetical protein
3741	 27.01	-1	3711906..3712601	+	231	24216441	-	LA3742	-	hypothetical protein
3742	 32.58	0	3713200..3713331	+	43	24216442	-	LA3743	-	hypothetical protein
3743	 38.08	0	3713517..3714590	-	357	24216443	-	LA3744	-	hypothetical protein
3744	 35.54	0	3714602..3715327	-	241	24216444	-	LA3745	-	hypothetical protein
3745	 31.01	0	3715624..3715752	+	42	24216445	-	LA3746	-	hypothetical protein
3746	 39.93	+1	3715836..3717185	-	449	24216446	thrC	LA3747	-	threonine synthase
3747	 39.58	0	3717189..3718181	-	330	24216447	-	LA3748	-	hypothetical protein
3748	 35.74	0	3718272..3718853	-	193	24216448	-	LA3749	-	hypothetical protein
3749	 26.67	-1	3718944..3719108	+	54	24216449	-	LA3750	-	hypothetical protein
3750	 30.58	0	3719105..3720700	+	531	24216450	-	LA3751	-	hypothetical protein
3751	 30.99	0	3721041..3722576	+	511	24216451	-	LA3752	-	hypothetical protein
3752	 27.58	-1	3723505..3725103	+	532	24216452	-	LA3753	-	hypothetical protein
3753	 35.01	0	3725147..3725743	+	198	24216453	sipC	LA3754	-	Signal peptidase I
3754	 32.54	0	3726112..3726237	+	41	24216454	-	LA3755	-	hypothetical protein
3755	 34.22	0	3726328..3727005	-	225	24216455	-	LA3757	-	acetyltransferase
3756	 28.46	-1	3726980..3727225	+	81	24216456	-	LA3756	-	hypothetical protein
3757	 34.10	0	3727258..3727518	+	86	24216457	rbpA3	LA3758	-	RNA-binding protein
3758	 32.38	0	3727667..3727771	-	34	24216458	-	LA3759	-	hypothetical protein
3759	 26.24	-1	3727890..3728030	-	46	24216459	-	LA3760	-	hypothetical protein
3760	 20.34	-2	3728206..3728382	-	58	24216460	-	LA3761	-	hypothetical protein
3761	 41.72	+1	3728686..3729114	+	142	24216461	-	LA3762	-	hypothetical protein
3762	 40.39	+1	3729293..3731941	+	882	161484946	valS	LA3763	-	valyl-tRNA synthetase
3763	 40.59	+1	3731931..3733211	+	426	24216463	purD	LA3764	-	phosphoribosylamine--glycine ligase
3764	 35.34	0	3733213..3734058	+	281	24216464	-	LA3765	-	hypothetical protein
3765	 26.54	-1	3734094..3734255	-	53	24216465	-	LA3766	-	hypothetical protein
3766	 40.31	+1	3734940..3736043	+	367	24216466	prfB	LA3767	-	peptide chain release factor 2
3767	 42.74	+1	3736077..3736193	-	38	24216467	-	LA3768	-	hypothetical protein
3768	 31.50	0	3736218..3736871	+	217	24216468	-	LA3769	-	hypothetical protein
3769	 35.66	0	3736934..3737707	+	257	24216469	-	LA3770	-	lipoprotein
3770	 28.83	-1	3738016..3738126	-	36	24216470	-	LA3772	-	hypothetical protein
3771	 36.75	0	3738053..3738169	+	38	24216471	-	LA3771	-	hypothetical protein
3772	 34.38	0	3738320..3738511	+	63	24216472	-	LA3773	-	hypothetical protein
3773	 38.33	0	3738864..3739163	+	99	24216473	-	LA3774	-	transposase
3774	 37.22	0	3739163..3740011	+	282	24216474	-	LA3775	-	transposase
3775	 32.41	0	3740433..3740540	+	35	24216475	-	LA3776	-	hypothetical protein
3776	 35.16	0	3741094..3741477	+	127	24216476	-	LA3777	-	protein crcB-like protein
3777	 39.24	0	3741921..3747596	+	1891	24216477	-	LA3778	-	surface protein Lk90-like protein
3778	 31.46	0	3747598..3748077	+	159	24216478	-	LA3779	-	hypothetical protein
3779	 35.70	0	3748052..3748432	+	126	24216479	-	LA3780	-	hypothetical protein
3780	 32.45	0	3748442..3748780	+	112	24216480	-	LA3781	-	hypothetical protein
3781	 43.95	+1	3748762..3749166	-	134	24216481	-	LA3782	-	glyoxalase/bleomycin resistance protein/dioxygenase family protein
3782	 39.65	0	3749420..3750748	-	442	24216482	-	LA3783	-	adenosine deaminase
3783	 36.59	0	3750798..3750920	-	40	24216483	-	LA3784	-	hypothetical protein
3784	 31.85	0	3751431..3751565	-	44	24216484	-	LA3785	-	hypothetical protein
3785	 28.57	-1	3751756..3751860	-	34	24216485	-	LA3786	-	hypothetical protein
3786	 30.07	-1	3752038..3752190	+	50	24216486	-	LA3787	-	hypothetical protein
3787	 34.04	0	3752187..3753038	+	283	24216487	-	LA3788	-	alpha/beta fold family hydrolase/acetyltransferase
3788	 34.09	0	3753399..3754193	+	264	24216488	-	LA3789	-	hypothetical protein
3789	 28.67	-1	3754271..3754720	+	149	24216489	-	LA3790	-	hypothetical protein
3790	 26.44	-1	3754856..3755116	-	86	24216490	-	LA3791	-	hypothetical protein
3791	 27.32	-1	3755210..3755392	-	60	24216491	-	LA3792	-	hypothetical protein
3792	 36.03	0	3755677..3756456	+	259	24216492	-	LA3793	-	hypothetical protein
3793	 35.71	0	3756539..3757630	+	363	24216493	-	LA3794	-	hypothetical protein
3794	 38.51	0	3758630..3759325	-	231	24216494	-	LA3795	-	glycosyl transferase
3795	 36.74	0	3759328..3760119	-	263	24216495	-	LA3796	-	hypothetical protein
3796	 36.12	0	3760132..3761208	-	358	24216496	-	LA3797	-	hypothetical protein
3797	 33.55	0	3761202..3761672	-	156	24216497	-	LA3798	-	hypothetical protein
3798	 37.83	0	3762362..3762628	+	88	24216498	rpsT	LA3799	-	30S ribosomal protein S20
3799	 40.56	+1	3762748..3764130	+	460	24216499	pgm	LA3800	-	phosphoglucosamine mutase
3800	 39.33	0	3764133..3765965	+	610	24216500	glmS	LA3801	-	glucosamine--fructose-6-phosphate aminotransferase
3801	 39.26	0	3765971..3767017	+	348	24216501	rfbA	LA3802	-	glucose-1-phosphate thymidylyltransferase
3802	 40.35	+1	3767034..3768644	+	536	24216502	pccB2	LA3803	-	propionyl-CoA carboxylase beta chain
3803	 31.53	0	3768826..3768936	+	36	24216503	-	LA3804	-	hypothetical protein
3804	 29.47	-1	3769783..3769989	+	68	24216504	-	LA3805	-	hypothetical protein
3805	 42.38	+1	3770039..3771331	+	430	24216505	amtB	LA3806	-	ammonium transporter
3806	 37.97	0	3771370..3771714	+	114	24216506	glnB	LA3807	-	nitrogen regulatory protein P-II
3807	 28.83	-1	3772127..3772237	-	36	24216507	-	LA3808	-	hypothetical protein
3808	 39.77	0	3772247..3774280	+	677	24216508	-	LA3809	-	hypothetical protein
3809	 40.00	+1	3774837..3775031	+	64	24216509	-	LA3810	-	hypothetical protein
3810	 35.94	0	3775039..3776535	+	498	24216510	speE1	LA3811	-	spermidine synthase
3811	 30.59	0	3776572..3776790	-	72	24216511	-	LA3812	-	hypothetical protein
3812	 38.89	0	3776793..3776918	-	41	24216512	-	LA3813	-	hypothetical protein
3813	 45.44	+2	3777281..3777784	-	167	24216513	-	LA3814	-	hypothetical protein
3814	 30.56	0	3777921..3778064	-	47	24216514	-	LA3815	-	hypothetical protein
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.