IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3649	 34.23	0	3604514..3604624	+	36	24216349	-	LA3650	-	hypothetical protein
3650	 33.33	0	3605556..3605819	-	87	24216350	-	LA3651	-	hypothetical protein
3651	 39.74	0	3605809..3606354	-	181	24216351	-	LA3652	-	RNA polymerase ECF-type sigma factor
3652	 35.61	0	3606344..3606826	-	160	24216352	-	LA3653	-	hypothetical protein
3653	 24.24	-2	3606998..3607129	+	43	24216353	-	LA3654	-	hypothetical protein
3654	 26.95	-1	3607387..3607527	-	46	24216354	-	LA3655	-	hypothetical protein
3655	 31.25	0	3607472..3607615	-	47	24216355	-	LA3656	-	hypothetical protein
3656	 33.63	0	3608213..3608896	-	227	24216356	-	LA3657	-	two-component response regulator
3657	 38.36	0	3609362..3609520	+	52	24216357	-	LA3658	-	hypothetical protein
3658	 36.44	0	3610391..3611131	-	246	24216358	-	LA3659	-	hypothetical protein
3659	 37.17	0	3611439..3611933	+	164	24216359	-	LA3660	-	hypothetical protein
3660	 40.07	+1	3612158..3612958	+	266	24216360	-	LA3661	-	alpha/beta fold family hydrolase/acetyltransferase
3661	 34.82	0	3612959..3615049	+	696	24216361	-	LA3662	-	two-component hybrid sensor and regulator
3662	 38.44	0	3615484..3616599	-	371	24216362	-	LA3664	-	hypothetical protein
3663	 25.64	-1	3616593..3616709	+	38	24216363	-	LA3663	-	hypothetical protein
3664	 34.54	0	3617208..3617705	+	165	24216364	-	LA3665	-	anti-sigma factor antagonist
3665	 37.54	0	3617702..3618295	+	197	24216365	-	LA3666	-	xanthosine triphosphate pyrophosphatase
3666	 25.64	-1	3619430..3619585	-	51	24216366	-	LA3667	-	hypothetical protein
3667	 40.48	+1	3619612..3620241	+	209	24216367	-	LA3668	-	Uracil-DNA glycosylase
3668	 33.83	0	3620207..3621220	-	337	24216368	-	LA3669	-	hypothetical protein
3669	 29.86	-1	3621207..3621350	-	47	24216369	-	LA3670	-	hypothetical protein
3670	 29.08	-1	3621453..3621593	-	46	24216370	-	LA3671	-	hypothetical protein
3671	 36.59	0	3621638..3622711	-	357	24216371	-	LA3672	-	alpha/beta fold family hydrolase/acetyltransferase
3672	 36.70	0	3622938..3623501	-	187	24216372	-	LA3673	-	peptide methionine sulfoxide reductase
3673	 35.19	0	3623672..3623779	-	35	24216373	-	LA3674	-	hypothetical protein
3674	 33.07	0	3623915..3625405	-	496	24216374	-	LA3675	-	hypothetical protein
3675	 37.35	0	3625887..3627602	+	571	24216375	-	LA3676	-	Acyl-CoA dehydrogenase
3676	 21.43	-2	3627604..3627729	+	41	24216376	-	LA3677	-	hypothetical protein
3677	 22.22	-2	3628996..3629103	+	35	24216377	-	LA3678	-	hypothetical protein
3678	 36.68	0	3629207..3629863	+	218	24216378	-	LA3679	-	macrolide acetyltransferase
3679	 30.53	0	3630866..3631186	+	106	24216379	-	LA3680	-	hypothetical protein
3680	 35.50	0	3631168..3632505	-	445	24216380	-	LA3681	-	phage-related-like protein
3681	 33.33	0	3633392..3633496	+	34	24216381	-	LA3682	-	hypothetical protein
3682	 35.04	0	3633715..3633831	-	38	24216382	-	LA3683	-	hypothetical protein
3683	 40.37	+1	3633806..3635440	-	544	24216383	-	LA3684	-	ABC transporter, ATP-binding protein
3684	 36.16	0	3635541..3637523	+	660	24216384	-	LA3685	-	Outer membrane protein
3685	 41.24	+1	3638193..3638369	+	58	24216385	-	LA3686	-	hypothetical protein
3686	 37.75	0	3638652..3638900	-	82	24216386	-	LA3687	-	hypothetical protein
3687	 30.84	0	3639087..3639887	+	266	24216387	-	LA3688	-	hypothetical protein
3688	 27.38	-1	3640050..3640217	-	55	24216388	-	LA3689	-	hypothetical protein
3689	 35.20	0	3640261..3641064	+	267	24216389	-	LA3690	-	hypothetical protein
3690	 36.71	0	3641209..3641415	+	68	24216390	-	LA3691	-	hypothetical protein
3691	 38.69	0	3641402..3643828	+	808	24216391	-	LA3692	-	penicillin-binding protein 1A
3692	 35.26	0	3643806..3645365	-	519	24216392	-	LA3693	-	peptide ABC transporter, periplasmic peptide-binding protein
3693	 38.76	0	3645365..3647245	+	626	24216393	msbA2	LA3694	-	transport ATP-binding protein msbA
3694	 31.61	0	3647269..3648312	+	347	24216394	lpxK	LA3695	-	tetraacyldisaccharide 4'-kinase
3695	 34.38	0	3649224..3649703	+	159	24216395	-	LA3696	-	hypothetical protein
3696	 34.22	0	3650167..3652311	-	714	24216396	-	LA3697	-	hypothetical protein
3697	 38.25	0	3652330..3654138	-	602	24216397	ftsI	LA3698	-	penicillin-binding protein
3698	 32.06	0	3654531..3655157	+	208	24216398	arsC	LA3699	-	arsenate reductase
3699	 32.59	0	3655330..3655464	+	44	24216399	-	LA3700	-	hypothetical protein
3700	 35.29	0	3656076..3656228	+	50	24216400	-	LA3701	-	hypothetical protein
3701	 28.89	-1	3656247..3656381	+	44	24216401	-	LA3702	-	hypothetical protein
3702	 37.12	0	3656414..3657442	+	342	24216402	hrcA	LA3703	-	heat-inducible transcription repressor hrcA
3703	 38.50	0	3657456..3658094	+	212	24216403	grpE	LA3704	-	GrpE protein
3704	 43.48	+1	3658129..3660069	+	646	24216404	dnaK	LA3705	-	chaperone protein dnaK
3705	 31.75	0	3660237..3660362	-	41	24216405	-	LA3707	-	hypothetical protein
3706	 42.54	+1	3660362..3661480	+	372	24216406	dnaJ4	LA3706	-	chaperone protein dnaJ
3707	 30.07	-1	3661630..3661782	+	50	24216407	-	LA3708	-	hypothetical protein
3708	 37.05	0	3661766..3662734	+	322	24216408	-	LA3709	-	Gfo/Idh/MocA family oxidoreductase
3709	 36.07	0	3662758..3663306	+	182	24216409	-	LA3710	-	hypothetical protein
3710	 32.28	0	3663868..3664152	+	94	24216410	-	LA3711	-	hypothetical protein
3711	 35.30	0	3664471..3667008	-	845	24216411	-	LA3712	-	hypothetical protein
3712	 34.09	0	3667005..3667796	-	263	24216412	-	LA3713	-	ABC transporter, ATP-binding protein
3713	 39.35	0	3668266..3670857	+	863	161484947	leuS	LA3714	-	leucyl-tRNA synthetase
3714	 35.42	0	3671805..3671948	+	47	24216414	-	LA3715	-	hypothetical protein
3715	 37.70	0	3672769..3673203	-	144	24216415	-	LA3716	-	hypothetical protein
3716	 39.80	0	3673338..3673538	-	66	24216416	-	LA3717	-	hypothetical protein
3717	 35.65	0	3673787..3674737	+	316	24216417	-	LA3718	-	transposase
3718	 40.61	+1	3674766..3675425	-	219	24216418	-	LA3719	-	hypothetical protein
3719	 32.82	0	3675558..3676535	-	325	24216419	-	LA3720	-	nuclease family protein
3720	 35.71	0	3676602..3676895	-	97	24216420	-	LA3721	-	hypothetical protein
3721	 30.23	0	3677081..3678013	-	310	24216421	-	LA3722	-	lipoprotein
3722	 40.10	+1	3678080..3678286	-	68	24216422	-	LA3723	-	hypothetical protein
3723	 33.81	0	3678589..3679215	-	208	24216423	-	LA3724	-	lipoprotein
3724	 41.92	+1	3679212..3687569	-	2785	24216424	-	LA3725	-	phenazine biosynthesis family protein
3725	 42.34	+1	3687710..3689242	-	510	24216425	-	LA3726	-	hypothetical protein
3726	 32.30	0	3689460..3689942	-	160	24216426	-	LA3727	-	hypothetical protein
3727	 29.29	-1	3690273..3690470	-	65	24216427	-	LA3728	-	hypothetical protein
3728	 43.52	+1	3690505..3691044	-	179	24216428	-	LA3729	-	Fimh-like protein
3729	 41.49	+1	3691586..3694453	-	955	24216429	-	LA3730	-	lipoprotein
3730	 38.96	0	3695022..3698219	-	1065	24216430	-	LA3731	-	Fmh-like protein
3731	 34.13	0	3698624..3698749	-	41	24216431	-	LA3732	-	hypothetical protein
3732	 35.72	0	3698773..3700194	+	473	24216432	-	LA3733	-	outer membrane efflux protein
3733	 41.05	+1	3700206..3702032	+	608	24216433	-	LA3734	-	hypothetical protein
3734	 34.20	0	3702056..3702751	+	231	24216434	-	LA3735	-	lipoprotein
3735	 29.91	-1	3702753..3703394	+	213	24216435	-	LA3736	-	TPR repeat-containing protein
3736	 34.61	0	3703741..3705234	+	497	24216436	hlyD	LA3737	-	HlyD family secretion protein
3737	 33.30	0	3705231..3708311	+	1026	24216437	czcA4	LA3738	-	cobalt-zinc-cadmium resistance protein CZCA
3738	 35.44	0	3708323..3709273	+	316	24216438	-	LA3739	-	acriflavine resistance protein
3739	 29.28	-1	3709260..3711209	+	649	24216439	-	LA3740	-	hypothetical protein
3740	 34.11	0	3711139..3711909	+	256	24216440	-	LA3741	-	hypothetical protein
3741	 27.01	-1	3711906..3712601	+	231	24216441	-	LA3742	-	hypothetical protein
3742	 32.58	0	3713200..3713331	+	43	24216442	-	LA3743	-	hypothetical protein
3743	 38.08	0	3713517..3714590	-	357	24216443	-	LA3744	-	hypothetical protein
3744	 35.54	0	3714602..3715327	-	241	24216444	-	LA3745	-	hypothetical protein
3745	 31.01	0	3715624..3715752	+	42	24216445	-	LA3746	-	hypothetical protein
3746	 39.93	+1	3715836..3717185	-	449	24216446	thrC	LA3747	-	threonine synthase
3747	 39.58	0	3717189..3718181	-	330	24216447	-	LA3748	-	hypothetical protein
3748	 35.74	0	3718272..3718853	-	193	24216448	-	LA3749	-	hypothetical protein
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.