IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.02   STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3579	 35.26	0	3530592..3531110	-	172	24216279	-	LA3580	-	hypothetical protein
3580	 37.73	0	3531501..3532274	+	257	24216280	-	LA3581	-	hypothetical protein
3581	 33.07	0	3532590..3534101	-	503	24216281	-	LA3582	-	vitamin K-dependent gamma-carboxylase
3582	 36.89	0	3534058..3535041	-	327	24216282	-	LA3583	-	SMF protein
3583	 35.54	0	3535038..3536036	-	332	24216283	-	LA3584	-	TPR repeat-containing protein
3584	 31.96	0	3536041..3536259	-	72	24216284	-	LA3585	-	hypothetical protein
3585	 41.95	+1	3538040..3538387	-	115	24216285	-	LA3586	-	hypothetical protein
3586	 35.11	0	3538526..3538975	+	149	24216286	-	LA3587	-	acetyltransferase
3587	 31.41	0	3539018..3539173	-	51	24216287	-	LA3588	-	hypothetical protein
3588	 39.15	0	3539439..3539627	-	62	24216288	-	LA3589	-	hypothetical protein
3589	 26.98	-1	3539722..3539847	+	41	24216289	-	LA3590	-	hypothetical protein
3590	 35.39	0	3540410..3540895	-	161	24216290	ygbB	LA3591	-	ygbB family protein
3591	 25.20	-2	3540995..3541117	+	40	24216291	-	LA3592	-	hypothetical protein
3592	 32.20	0	3541327..3541503	-	58	24216292	-	LA3593	-	hypothetical protein
3593	 29.79	-1	3541524..3541805	-	93	24216293	-	LA3594	-	hypothetical protein
3594	 32.54	0	3542411..3542536	-	41	24216294	-	LA3595	-	hypothetical protein
3595	 37.94	0	3542983..3545502	+	839	24216295	lon	LA3596	-	ATP-dependent Lon protease
3596	 40.44	+1	3545547..3546671	+	374	24216296	-	LA3597	-	DegT/DnrJ/EryC4/StrS family protein
3597	 38.85	0	3547150..3547638	+	162	24216297	-	LA3598	-	DNA-binding stress protein
3598	 24.11	-2	3547884..3548024	-	46	24216298	-	LA3599	-	hypothetical protein
3599	 34.84	0	3548152..3548550	-	132	24216299	-	LA3600	-	hypothetical protein
3600	 33.33	0	3548732..3548854	-	40	24216300	-	LA3601	-	hypothetical protein
3601	 32.14	0	3549310..3549813	-	167	24216301	-	LA3602	-	hypothetical protein
3602	 34.48	0	3550854..3553217	-	787	24216302	-	LA3603	-	sulfatase family protein
3603	 33.95	0	3553192..3553353	-	53	24216303	-	LA3605	-	hypothetical protein
3604	 38.71	0	3553331..3554260	+	309	24216304	-	LA3604	-	lysophospholipase
3605	 39.96	+1	3554377..3554829	+	150	24216305	-	LA3606	-	hypothetical protein
3606	 39.09	0	3554831..3555247	+	138	24216306	-	LA3607	-	MaoC family protein
3607	 41.25	+1	3555756..3556361	+	201	24216307	-	LA3608	-	hypothetical protein
3608	 34.60	0	3556431..3558485	-	684	24216308	-	LA3610	-	sigma factor sigB regulation protein rsbU
3609	 27.72	-1	3558485..3558787	+	100	24216309	-	LA3609	-	hypothetical protein
3610	 32.46	0	3559431..3560234	+	267	24216310	-	LA3611	-	TPR repeat-containing protein
3611	 24.24	-2	3560259..3560456	+	65	24216311	-	LA3612	-	hypothetical protein
3612	 35.72	0	3561345..3562391	-	348	24216312	panE2	LA3613	-	2-dehydropantoate 2-reductase
3613	 32.18	0	3562496..3565105	-	869	24216313	-	LA3614	-	TPR repeat-containing protein
3614	 35.50	0	3565310..3566737	-	475	24216314	-	LA3615	-	OmpA family outer membrane protein
3615	 36.76	0	3566804..3567124	+	106	24216315	-	LA3616	-	divalent cation tolerance protein
3616	 34.71	0	3567149..3567658	+	169	24216316	-	LA3617	-	hypothetical protein
3617	 37.25	0	3567640..3567945	-	101	24216317	-	LA3618	-	hypothetical protein
3618	 37.02	0	3567929..3568714	-	261	24216318	-	LA3619	-	transposase
3619	 34.12	0	3568965..3569345	+	126	24216319	-	LA3620	-	hypothetical protein
3620	 31.11	0	3570347..3570481	-	44	24216320	-	LA3621	-	hypothetical protein
3621	 38.58	0	3570628..3572973	-	781	24216321	-	LA3622	-	ammonium transporter
3622	 37.97	0	3573827..3574603	-	258	24216322	-	LA3623	-	hypothetical protein
3623	 37.76	0	3575508..3576614	+	368	24216323	-	LA3624	-	glycosyl transferase
3624	 38.71	0	3576611..3579364	+	917	24216324	polA	LA3625	-	DNA polymerase I
3625	 33.75	0	3579867..3580106	+	79	24216325	-	LA3626	-	hypothetical protein
3626	 43.53	+1	3580409..3581722	+	437	24216326	-	LA3627	-	Acyl-CoA dehydrogenase
3627	 39.59	0	3581809..3583230	+	473	24216327	trpE	LA3628	-	anthranilate synthase component I
3628	 37.24	0	3583221..3583808	+	195	24216328	trpG	LA3629	-	anthranilate synthase component II
3629	 36.45	0	3583805..3585700	+	631	24216329	msbA1	LA3630	-	transport ATP-binding protein msbA
3630	 39.86	0	3585697..3586110	+	137	24216330	-	LA3631	-	two-component response regulator
3631	 36.62	0	3586099..3587559	-	486	24216331	-	LA3632	-	HEAT repeat-containing PBS lyase
3632	 33.77	0	3587602..3587832	-	76	24216332	-	LA3633	-	hypothetical protein
3633	 37.51	0	3587920..3589476	+	518	24216333	-	LA3634	-	GTP-binding protein
3634	 38.36	0	3589733..3589891	-	52	24216334	-	LA3635	-	hypothetical protein
3635	 36.86	0	3590256..3591530	-	424	24216335	pyrC	LA3636	-	dihydroorotase
3636	 38.89	0	3593094..3593705	-	203	24216336	-	LA3637	-	hypothetical protein
3637	 38.60	0	3593847..3595136	+	429	24216337	thrA	LA3638	-	homoserine dehydrogenase
3638	 32.80	0	3595234..3595608	+	124	24216338	-	LA3639	-	anti-sigma factor antagonist
3639	 34.81	0	3596476..3597015	+	179	24216339	-	LA3640	-	hypothetical protein
3640	 32.26	0	3597081..3597824	-	247	24216340	-	LA3641	-	acetyltransferase
3641	 26.46	-1	3598047..3598235	-	62	24216341	-	LA3642	-	hypothetical protein
3642	 33.33	0	3598367..3598486	-	39	24216342	-	LA3643	-	hypothetical protein
3643	 40.30	+1	3598797..3599600	-	267	24216343	ech7	LA3644	-	enoyl-CoA hydratase
3644	 40.11	+1	3599908..3600261	-	117	24216344	-	LA3645	-	single-strand binding protein
3645	 28.44	-1	3600928..3601704	-	258	24216345	-	LA3646	-	SCO2/SenC family protein
3646	 26.24	-1	3602408..3602548	-	46	24216346	-	LA3647	-	hypothetical protein
3647	 37.28	0	3602706..3603263	-	185	24216347	-	LA3648	-	acidic periplasmic protein
3648	 40.52	+1	3603250..3604167	-	305	24216348	-	LA3649	-	hypothetical protein
3649	 34.23	0	3604514..3604624	+	36	24216349	-	LA3650	-	hypothetical protein
3650	 33.33	0	3605556..3605819	-	87	24216350	-	LA3651	-	hypothetical protein
3651	 39.74	0	3605809..3606354	-	181	24216351	-	LA3652	-	RNA polymerase ECF-type sigma factor
3652	 35.61	0	3606344..3606826	-	160	24216352	-	LA3653	-	hypothetical protein
3653	 24.24	-2	3606998..3607129	+	43	24216353	-	LA3654	-	hypothetical protein
3654	 26.95	-1	3607387..3607527	-	46	24216354	-	LA3655	-	hypothetical protein
3655	 31.25	0	3607472..3607615	-	47	24216355	-	LA3656	-	hypothetical protein
3656	 33.63	0	3608213..3608896	-	227	24216356	-	LA3657	-	two-component response regulator
3657	 38.36	0	3609362..3609520	+	52	24216357	-	LA3658	-	hypothetical protein
3658	 36.44	0	3610391..3611131	-	246	24216358	-	LA3659	-	hypothetical protein
3659	 37.17	0	3611439..3611933	+	164	24216359	-	LA3660	-	hypothetical protein
3660	 40.07	+1	3612158..3612958	+	266	24216360	-	LA3661	-	alpha/beta fold family hydrolase/acetyltransferase
3661	 34.82	0	3612959..3615049	+	696	24216361	-	LA3662	-	two-component hybrid sensor and regulator
3662	 38.44	0	3615484..3616599	-	371	24216362	-	LA3664	-	hypothetical protein
3663	 25.64	-1	3616593..3616709	+	38	24216363	-	LA3663	-	hypothetical protein
3664	 34.54	0	3617208..3617705	+	165	24216364	-	LA3665	-	anti-sigma factor antagonist
3665	 37.54	0	3617702..3618295	+	197	24216365	-	LA3666	-	xanthosine triphosphate pyrophosphatase
3666	 25.64	-1	3619430..3619585	-	51	24216366	-	LA3667	-	hypothetical protein
3667	 40.48	+1	3619612..3620241	+	209	24216367	-	LA3668	-	Uracil-DNA glycosylase
3668	 33.83	0	3620207..3621220	-	337	24216368	-	LA3669	-	hypothetical protein
3669	 29.86	-1	3621207..3621350	-	47	24216369	-	LA3670	-	hypothetical protein
3670	 29.08	-1	3621453..3621593	-	46	24216370	-	LA3671	-	hypothetical protein
3671	 36.59	0	3621638..3622711	-	357	24216371	-	LA3672	-	alpha/beta fold family hydrolase/acetyltransferase
3672	 36.70	0	3622938..3623501	-	187	24216372	-	LA3673	-	peptide methionine sulfoxide reductase
3673	 35.19	0	3623672..3623779	-	35	24216373	-	LA3674	-	hypothetical protein
3674	 33.07	0	3623915..3625405	-	496	24216374	-	LA3675	-	hypothetical protein
3675	 37.35	0	3625887..3627602	+	571	24216375	-	LA3676	-	Acyl-CoA dehydrogenase
3676	 21.43	-2	3627604..3627729	+	41	24216376	-	LA3677	-	hypothetical protein
3677	 22.22	-2	3628996..3629103	+	35	24216377	-	LA3678	-	hypothetical protein
3678	 36.68	0	3629207..3629863	+	218	24216378	-	LA3679	-	macrolide acetyltransferase
35.02	MEAN

4.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.