IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.02   STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3431	 36.21	0	3391359..3392957	-	532	24216131	-	LA3432	-	hypothetical protein
3432	 37.63	0	3392980..3393771	-	263	24216132	-	LA3433	-	hypothetical protein
3433	 38.00	0	3393746..3394837	-	363	24216133	amiA	LA3434	-	N-acetylmuramoyl-L-alanine amidase
3434	 37.83	0	3394804..3396426	-	540	24216134	-	LA3435	-	ATP-dependent RNA helicase
3435	 39.68	0	3396423..3397226	-	267	24216135	-	LA3436	-	hypothetical protein
3436	 42.95	+1	3397345..3397812	+	155	24216136	-	LA3437	-	hypothetical protein
3437	 34.31	0	3397796..3398308	+	170	24216137	-	LA3438	-	hypothetical protein
3438	 29.79	-1	3398450..3398590	+	46	24216138	-	LA3439	-	hypothetical protein
3439	 33.58	0	3399007..3399801	-	264	24216139	-	LA3440	-	hypothetical protein
3440	 39.11	0	3400953..3402440	-	495	24216140	pepA	LA3441	-	cytosol aminopeptidase
3441	 38.54	0	3402437..3402916	-	159	24216141	-	LA3442	-	bacterioferritin comigratory protein
3442	 31.75	0	3403413..3403538	-	41	24216142	-	LA3443	-	hypothetical protein
3443	 38.33	0	3403954..3405213	-	419	24216143	-	LA3444	-	hypothetical protein
3444	 26.02	-1	3405210..3405332	-	40	24216144	-	LA3445	-	hypothetical protein
3445	 41.55	+1	3405329..3405535	-	68	24216145	-	LA3447	-	hypothetical protein
3446	 39.48	0	3405522..3405830	+	102	24216146	-	LA3446	-	hypothetical protein
3447	 43.69	+1	3406555..3406998	-	147	24216147	-	LA3448	-	hypothetical protein
3448	 35.17	0	3407090..3408178	+	362	24216148	ribF	LA3449	-	riboflavin biosynthesis protein RibF
3449	 33.89	0	3408274..3410070	+	598	24216149	-	LA3450	-	regulatory protein
3450	 34.80	0	3410074..3411849	+	591	24216150	-	LA3451	-	regulation protein
3451	 37.76	0	3412183..3412476	-	97	24216151	-	LA3452	-	hypothetical protein
3452	 35.53	0	3412500..3413456	-	318	24216152	-	LA3453	-	hypothetical protein
3453	 38.44	0	3413474..3415393	-	639	24216153	fliD	LA3454	-	flagellar hook-associated protein FliD
3454	 42.26	+1	3415970..3416686	+	238	24216154	glpF	LA3455	-	glycerol uptake facilitator protein
3455	 37.19	0	3417808..3419001	+	397	24216155	-	LA3456	-	M23/M37 familypeptidase
3456	 31.01	0	3419155..3419283	-	42	24216156	-	LA3457	-	hypothetical protein
3457	 30.04	-1	3419819..3420061	-	80	24216157	-	LA3458	-	hypothetical protein
3458	 35.56	0	3420194..3420328	-	44	24216158	-	LA3460	-	hypothetical protein
3459	 37.03	0	3420315..3422453	+	712	24216159	-	LA3459	-	polyphosphate kinase
3460	 37.83	0	3422443..3423888	+	481	24216160	-	LA3461	-	oxidoreductase
3461	 39.77	0	3423888..3425471	+	527	24216161	-	LA3462	-	carbon-nitrogen hydrolase
3462	 35.34	0	3425453..3425800	+	115	24216162	-	LA3463	-	hypothetical protein
3463	 33.33	0	3426012..3426134	+	40	24216163	-	LA3464	-	hypothetical protein
3464	 33.33	0	3426511..3426621	-	36	24216164	-	LA3465	-	hypothetical protein
3465	 39.99	+1	3427074..3429476	-	800	24216165	-	LA3466	-	thermolysin
3466	 29.63	-1	3430496..3430603	-	35	24216166	-	LA3467	-	hypothetical protein
3467	 38.38	0	3430889..3433366	+	825	24216167	fecA	LA3468	-	TonB-dependent receptor
3468	 41.27	+1	3433797..3435119	+	440	24216168	-	LA3469	-	iron-reglulated protein A
3469	 43.12	+1	3435151..3436662	+	503	24216169	-	LA3470	-	hypothetical protein
3470	 38.52	0	3436659..3437873	+	404	24216170	irpA	LA3471	-	iron-reglulated protein A
3471	 36.09	0	3438522..3438884	-	120	24216171	-	LA3472	-	hypothetical protein
3472	 35.58	0	3440983..3441738	-	251	24216172	-	LA3473	-	hypothetical protein
3473	 37.46	0	3441699..3443126	-	475	24216173	-	LA3474	-	hypothetical protein
3474	 35.17	0	3443146..3443688	-	180	24216174	-	LA3475	-	hypothetical protein
3475	 35.74	0	3443705..3444244	-	179	24216175	-	LA3476	-	hypothetical protein
3476	 36.83	0	3444278..3444820	-	180	24216176	-	LA3477	-	hypothetical protein
3477	 38.43	0	3444875..3445600	-	241	24216177	-	LA3478	-	hypothetical protein
3478	 35.67	0	3445555..3446280	-	241	24216178	-	LA3479	-	hypothetical protein
3479	 37.00	0	3446271..3446597	-	108	24216179	-	LA3480	-	hypothetical protein
3480	 40.99	+1	3447447..3447668	+	73	24216180	-	LA3481	-	transposase
3481	 41.03	+1	3447711..3448178	+	155	24216181	-	LA3482	-	transposase
3482	 38.16	0	3448175..3448588	+	137	24216182	-	LA3483	-	integrase core subunit
3483	 41.92	+1	3449172..3449951	-	259	24216183	-	LA3484	-	3-oxoacyl-(acyl-carrier protein) reductase
3484	 42.23	+1	3450102..3450809	+	235	24216184	estA	LA3485	-	phospholipase/carboxylesterase
3485	 34.96	0	3450806..3451480	+	224	24216185	-	LA3486	-	hypothetical protein
3486	 29.96	-1	3451740..3451976	+	78	24216186	-	LA3487	-	hypothetical protein
3487	 31.75	0	3452025..3452150	+	41	24216187	-	LA3488	-	hypothetical protein
3488	 26.23	-1	3452796..3453626	+	276	24216188	flgC2	LA3489	-	flagellar basal-body rod protein
3489	 37.55	0	3454123..3456042	+	639	24216189	-	LA3490	-	hypothetical protein
3490	 33.09	0	3456460..3456873	+	137	24216190	-	LA3491	-	hypothetical protein
3491	 37.14	0	3457623..3458516	+	297	24216191	-	LA3492	-	hypothetical protein
3492	 35.96	0	3458714..3458827	+	37	24216192	-	LA3493	-	hypothetical protein
3493	 30.51	0	3459461..3459955	-	164	24216193	-	LA3494	-	hypothetical protein
3494	 30.70	0	3460034..3460147	-	37	24216194	-	LA3495	-	hypothetical protein
3495	 26.13	-1	3460450..3460560	-	36	24216195	-	LA3496	-	hypothetical protein
3496	 35.94	0	3460682..3462904	-	740	24216196	-	LA3497	-	molybdate metabolism regulator
3497	 38.91	0	3463046..3463762	-	238	24216197	phoU	LA3498	-	phosphate transporter PhoU
3498	 38.23	0	3464393..3464821	-	142	24216198	-	LA3499	-	cytochrome oxidase subunit 1
3499	 30.05	-1	3465215..3465793	-	192	24216199	-	LA3500	-	hypothetical protein
3500	 34.12	0	3466420..3467691	+	423	24216200	-	LA3501	-	hypothetical protein
3501	 30.08	-1	3467734..3467856	-	40	24216201	-	LA3502	-	hypothetical protein
3502	 44.76	+2	3468384..3468812	+	142	24216202	-	LA3503	-	hypothetical protein
3503	 43.37	+1	3468999..3469496	+	165	24216203	-	LA3504	-	hypothetical protein
3504	 46.91	+2	3469503..3470312	+	269	24216204	-	LA3505	-	hypothetical protein
3505	 36.84	0	3470528..3472240	-	570	24216205	-	LA3506	-	methyl-accepting chemotaxis protein
3506	 37.50	0	3472274..3472633	-	119	24216206	-	LA3507	-	cytochrome c
3507	 33.65	0	3472633..3472950	-	105	24216207	mauL	LA3508	-	methylamine utilization protein mauL
3508	 38.29	0	3472983..3474071	-	362	24216208	-	LA3509	-	methylamine utilization protein mauG
3509	 29.27	-1	3474164..3474286	-	40	24216209	-	LA3510	-	hypothetical protein
3510	 37.88	0	3475346..3476005	-	219	24216210	purQ	LA3511	-	phosphoribosylformyl glycinamidine synthetase
3511	 34.54	0	3476002..3476250	-	82	24216211	-	LA3512	-	hypothetical protein
3512	 39.16	0	3476226..3477083	-	285	24216212	hemH	LA3513	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
3513	 39.42	0	3477080..3478213	-	377	24216213	-	LA3514	-	two-component response regulator
3514	 38.64	0	3478220..3479029	-	269	24216214	ccmC	LA3515	-	Heme exporter protein A
3515	 36.90	0	3478969..3479640	-	223	24216215	ccmB	LA3516	-	Heme exporter protein A
3516	 38.17	0	3479612..3480334	-	240	24216216	ccmA	LA3517	-	Heme exporter protein A
3517	 40.17	+1	3480380..3480496	-	38	24216217	-	LA3518	-	hypothetical protein
3518	 47.40	+2	3480546..3481142	+	198	24216218	-	LA3519	-	hypothetical protein
3519	 29.44	-1	3481272..3481451	+	59	24216219	-	LA3520	-	hypothetical protein
3520	 35.27	0	3481487..3482623	+	378	24216220	-	LA3521	-	TPR repeat-containing protein
3521	 38.55	0	3482620..3483309	+	229	24216221	-	LA3522	-	hypothetical protein
3522	 38.43	0	3483310..3484074	-	254	24216222	-	LA3523	-	oligopeptide transport ATP-binding protein
3523	 37.67	0	3484991..3485566	+	191	24216223	-	LA3524	-	hypothetical protein
3524	 28.57	-1	3485866..3485970	+	34	24216224	-	LA3525	-	hypothetical protein
3525	 26.90	-1	3486033..3486203	-	56	24216225	-	LA3526	-	hypothetical protein
3526	 29.86	-1	3486246..3486533	-	95	24216226	-	LA3527	-	hypothetical protein
3527	 30.02	-1	3486539..3487444	-	301	24216227	-	LA3528	-	mrr restriction system protein
3528	 33.55	0	3487569..3488036	-	155	24216228	-	LA3529	-	4-hydroxybenzoyl-CoA thioesterase
3529	 29.82	-1	3489161..3489331	-	56	24216229	-	LA3530	-	hypothetical protein
3530	 45.67	+2	3489578..3489958	+	126	24216230	-	LA3531	-	ArsR family transcriptional regulator
35.02	MEAN

4.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.