IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.02   STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3388	 31.82	0	3351464..3351595	-	43	24216088	-	LA3389	-	hypothetical protein
3389	 35.98	0	3351751..3352581	-	276	24216089	-	LA3390	-	hypothetical protein
3390	 35.37	0	3352585..3353763	-	392	24216090	-	LA3392	-	hypothetical protein
3391	 24.39	-2	3353755..3353877	+	40	24216091	-	LA3391	-	hypothetical protein
3392	 25.60	-1	3354962..3355129	+	55	24216092	-	LA3393	-	hypothetical protein
3393	 39.39	0	3355224..3356330	+	368	24216093	-	LA3394	-	hypothetical protein
3394	 23.42	-2	3356438..3356548	+	36	24216094	-	LA3395	-	hypothetical protein
3395	 36.52	0	3356702..3358111	-	469	24216095	-	LA3396	-	hypothetical protein
3396	 36.24	0	3358111..3358935	-	274	24216096	-	LA3397	-	hypothetical protein
3397	 38.50	0	3359116..3359793	-	225	24216097	-	LA3398	-	S-adenosylmethionine-dependent methyltransferase
3398	 34.66	0	3359790..3360617	-	275	24216098	-	LA3399	-	metallo-beta-lactamase superfamily protein
3399	 33.15	0	3360617..3362290	-	557	24216099	-	LA3400	-	processing proteinase
3400	 36.77	0	3362292..3363920	-	542	24216100	-	LA3401	-	zinc protease
3401	 39.59	0	3363949..3364731	+	260	24216101	-	LA3402	-	hypothetical protein
3402	 37.47	0	3364728..3365162	+	144	24216102	-	LA3403	-	hypothetical protein
3403	 26.02	-1	3365277..3365399	-	40	24216103	-	LA3404	-	hypothetical protein
3404	 33.33	0	3366125..3366565	-	146	24216104	-	LA3405	-	hypothetical protein
3405	 37.80	0	3366805..3367296	-	163	24216105	-	LA3406	-	nucleotide-binding protein
3406	 39.84	0	3367293..3370226	-	977	24216106	alaS	LA3407	-	alanyl-tRNA synthetase
3407	 40.71	+1	3370310..3370729	-	139	24216107	rpsI	LA3408	-	30S ribosomal protein S9
3408	 39.78	0	3370719..3371168	-	149	24216108	rplM	LA3409	-	50S ribosomal protein L13
3409	 34.76	0	3372155..3372784	-	209	24216109	-	LA3410	-	hypothetical protein
3410	 33.33	0	3372801..3372899	+	32	24216110	-	LA3411	-	hypothetical protein
3411	 39.07	0	3372826..3373749	+	307	24216111	-	LA3412	-	thiamin-phosphate kinase
3412	 50.31	+2	3374480..3374638	+	52	24216112	-	LA3413	-	hypothetical protein
3413	 49.18	+2	3374650..3374832	+	60	24216113	-	LA3414	-	hypothetical protein
3414	 45.20	+2	3375139..3375492	+	117	24216114	-	LA3415	-	hypothetical protein
3415	 40.93	+1	3375610..3376083	-	157	24216115	rpsG	LA3416	-	30S ribosomal protein S7
3416	 44.80	+2	3376101..3376475	-	124	24216116	rpsL	LA3417	-	30S ribosomal protein S12
3417	 31.67	0	3376544..3376663	+	39	24216117	-	LA3418	-	hypothetical protein
3418	 45.43	+2	3376873..3381087	-	1404	24216118	rpoC	LA3419	-	DNA-directed RNA polymerase subunit beta'
3419	 44.88	+2	3381091..3384771	-	1226	24216119	rpoB	LA3420	-	DNA-directed RNA polymerase subunit beta
3420	 45.83	+2	3384994..3385377	-	127	24216120	rplL	LA3421	-	50S ribosomal protein L7/L12
3421	 43.45	+1	3385427..3385960	-	177	24216121	rplJ	LA3422	-	50S ribosomal protein L10
3422	 43.29	+1	3385988..3386680	-	230	24216122	rplA	LA3423	-	50S ribosomal protein L1
3423	 45.22	+2	3386687..3387115	-	142	24216123	rplK	LA3424	-	50S ribosomal protein L11
3424	 38.28	0	3387142..3387687	-	181	24216124	-	LA3425	-	hypothetical protein
3425	 40.21	+1	3387715..3387903	-	62	24216125	secE	LA3426	-	preprotein translocase subunit SecE
3426	 47.75	+2	3387900..3388010	-	36	24216126	-	LA3427	-	hypothetical protein
3427	 29.82	-1	3388253..3388366	-	37	24216127	-	LA3428	-	hypothetical protein
3428	 46.61	+2	3388605..3388943	-	112	24216128	-	LA3429	-	hypothetical protein
3429	 32.16	0	3388965..3389135	+	56	24216129	-	LA3430	-	hypothetical protein
3430	 34.64	0	3389228..3389380	-	50	24216130	-	LA3431	-	hypothetical protein
3431	 36.21	0	3391359..3392957	-	532	24216131	-	LA3432	-	hypothetical protein
3432	 37.63	0	3392980..3393771	-	263	24216132	-	LA3433	-	hypothetical protein
3433	 38.00	0	3393746..3394837	-	363	24216133	amiA	LA3434	-	N-acetylmuramoyl-L-alanine amidase
3434	 37.83	0	3394804..3396426	-	540	24216134	-	LA3435	-	ATP-dependent RNA helicase
3435	 39.68	0	3396423..3397226	-	267	24216135	-	LA3436	-	hypothetical protein
3436	 42.95	+1	3397345..3397812	+	155	24216136	-	LA3437	-	hypothetical protein
3437	 34.31	0	3397796..3398308	+	170	24216137	-	LA3438	-	hypothetical protein
3438	 29.79	-1	3398450..3398590	+	46	24216138	-	LA3439	-	hypothetical protein
3439	 33.58	0	3399007..3399801	-	264	24216139	-	LA3440	-	hypothetical protein
3440	 39.11	0	3400953..3402440	-	495	24216140	pepA	LA3441	-	cytosol aminopeptidase
3441	 38.54	0	3402437..3402916	-	159	24216141	-	LA3442	-	bacterioferritin comigratory protein
3442	 31.75	0	3403413..3403538	-	41	24216142	-	LA3443	-	hypothetical protein
3443	 38.33	0	3403954..3405213	-	419	24216143	-	LA3444	-	hypothetical protein
3444	 26.02	-1	3405210..3405332	-	40	24216144	-	LA3445	-	hypothetical protein
3445	 41.55	+1	3405329..3405535	-	68	24216145	-	LA3447	-	hypothetical protein
3446	 39.48	0	3405522..3405830	+	102	24216146	-	LA3446	-	hypothetical protein
3447	 43.69	+1	3406555..3406998	-	147	24216147	-	LA3448	-	hypothetical protein
3448	 35.17	0	3407090..3408178	+	362	24216148	ribF	LA3449	-	riboflavin biosynthesis protein RibF
3449	 33.89	0	3408274..3410070	+	598	24216149	-	LA3450	-	regulatory protein
3450	 34.80	0	3410074..3411849	+	591	24216150	-	LA3451	-	regulation protein
3451	 37.76	0	3412183..3412476	-	97	24216151	-	LA3452	-	hypothetical protein
3452	 35.53	0	3412500..3413456	-	318	24216152	-	LA3453	-	hypothetical protein
3453	 38.44	0	3413474..3415393	-	639	24216153	fliD	LA3454	-	flagellar hook-associated protein FliD
3454	 42.26	+1	3415970..3416686	+	238	24216154	glpF	LA3455	-	glycerol uptake facilitator protein
3455	 37.19	0	3417808..3419001	+	397	24216155	-	LA3456	-	M23/M37 familypeptidase
3456	 31.01	0	3419155..3419283	-	42	24216156	-	LA3457	-	hypothetical protein
3457	 30.04	-1	3419819..3420061	-	80	24216157	-	LA3458	-	hypothetical protein
3458	 35.56	0	3420194..3420328	-	44	24216158	-	LA3460	-	hypothetical protein
3459	 37.03	0	3420315..3422453	+	712	24216159	-	LA3459	-	polyphosphate kinase
3460	 37.83	0	3422443..3423888	+	481	24216160	-	LA3461	-	oxidoreductase
3461	 39.77	0	3423888..3425471	+	527	24216161	-	LA3462	-	carbon-nitrogen hydrolase
3462	 35.34	0	3425453..3425800	+	115	24216162	-	LA3463	-	hypothetical protein
3463	 33.33	0	3426012..3426134	+	40	24216163	-	LA3464	-	hypothetical protein
3464	 33.33	0	3426511..3426621	-	36	24216164	-	LA3465	-	hypothetical protein
3465	 39.99	+1	3427074..3429476	-	800	24216165	-	LA3466	-	thermolysin
3466	 29.63	-1	3430496..3430603	-	35	24216166	-	LA3467	-	hypothetical protein
3467	 38.38	0	3430889..3433366	+	825	24216167	fecA	LA3468	-	TonB-dependent receptor
3468	 41.27	+1	3433797..3435119	+	440	24216168	-	LA3469	-	iron-reglulated protein A
3469	 43.12	+1	3435151..3436662	+	503	24216169	-	LA3470	-	hypothetical protein
3470	 38.52	0	3436659..3437873	+	404	24216170	irpA	LA3471	-	iron-reglulated protein A
3471	 36.09	0	3438522..3438884	-	120	24216171	-	LA3472	-	hypothetical protein
3472	 35.58	0	3440983..3441738	-	251	24216172	-	LA3473	-	hypothetical protein
3473	 37.46	0	3441699..3443126	-	475	24216173	-	LA3474	-	hypothetical protein
3474	 35.17	0	3443146..3443688	-	180	24216174	-	LA3475	-	hypothetical protein
3475	 35.74	0	3443705..3444244	-	179	24216175	-	LA3476	-	hypothetical protein
3476	 36.83	0	3444278..3444820	-	180	24216176	-	LA3477	-	hypothetical protein
3477	 38.43	0	3444875..3445600	-	241	24216177	-	LA3478	-	hypothetical protein
3478	 35.67	0	3445555..3446280	-	241	24216178	-	LA3479	-	hypothetical protein
3479	 37.00	0	3446271..3446597	-	108	24216179	-	LA3480	-	hypothetical protein
3480	 40.99	+1	3447447..3447668	+	73	24216180	-	LA3481	-	transposase
3481	 41.03	+1	3447711..3448178	+	155	24216181	-	LA3482	-	transposase
3482	 38.16	0	3448175..3448588	+	137	24216182	-	LA3483	-	integrase core subunit
3483	 41.92	+1	3449172..3449951	-	259	24216183	-	LA3484	-	3-oxoacyl-(acyl-carrier protein) reductase
3484	 42.23	+1	3450102..3450809	+	235	24216184	estA	LA3485	-	phospholipase/carboxylesterase
3485	 34.96	0	3450806..3451480	+	224	24216185	-	LA3486	-	hypothetical protein
3486	 29.96	-1	3451740..3451976	+	78	24216186	-	LA3487	-	hypothetical protein
3487	 31.75	0	3452025..3452150	+	41	24216187	-	LA3488	-	hypothetical protein
35.02	MEAN

4.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.