IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3121	 37.07	0	3111139..3111459	+	106	24215821	-	LA3122	-	hypothetical protein
3122	 30.46	0	3111528..3111701	-	57	24215822	-	LA3123	-	hypothetical protein
3123	 23.68	-2	3111706..3111819	-	37	24215823	-	LA3124	-	hypothetical protein
3124	 32.18	0	3112140..3112313	-	57	24215824	-	LA3125	-	hypothetical protein
3125	 35.11	0	3112573..3113361	+	262	24215825	-	LA3126	-	hypothetical protein
3126	 35.31	0	3113366..3114274	+	302	24215826	nctP2	LA3127	-	sodium bile acid symporter family Na(+) dependent transporter
3127	 35.51	0	3114258..3115361	-	367	24215827	-	LA3128	-	hypothetical protein
3128	 28.07	-1	3115512..3115625	+	37	24215828	-	LA3129	-	hypothetical protein
3129	 28.57	-1	3115689..3115793	-	34	24215829	-	LA3130	-	hypothetical protein
3130	 27.67	-1	3116199..3116357	-	52	24215830	-	LA3132	-	hypothetical protein
3131	 27.78	-1	3116332..3116457	+	41	24215831	-	LA3131	-	hypothetical protein
3132	 31.13	0	3117584..3118765	+	393	24215832	-	LA3133	-	AraC family transcriptional regulator
3133	 37.78	0	3119516..3119650	+	44	24215833	-	LA3134	-	hypothetical protein
3134	 42.00	+1	3119989..3121200	+	403	24215834	fadE	LA3135	-	acetyl-CoA acetyltransferase
3135	 28.46	-1	3122086..3122208	-	40	24215835	-	LA3136	-	hypothetical protein
3136	 25.56	-1	3122198..3122596	-	132	24215836	-	LA3137	-	hypothetical protein
3137	 41.72	+1	3122777..3123790	+	337	24215837	ompL1	LA3138	-	transmembrane outer membrane protein L1
3138	 33.96	0	3123894..3124853	-	319	24215838	-	LA3139	-	lipoprotein
3139	 33.33	0	3125052..3125177	-	41	24215839	-	LA3140	-	hypothetical protein
3140	 30.13	-1	3125652..3125807	+	51	24215840	-	LA3141	-	hypothetical protein
3141	 33.84	0	3126095..3126292	-	65	24215841	-	LA3142	-	hypothetical protein
3142	 41.61	+1	3126270..3127526	-	418	24215842	-	LA3143	-	Acyl-CoA dehydrogenase
3143	 37.60	0	3127708..3128880	-	390	24215843	-	LA3144	-	Alpha-methylacyl-CoA racemase
3144	 37.33	0	3129315..3130391	+	358	24215844	-	LA3145	-	NHL repeat-containing protein
3145	 38.24	0	3130906..3131292	-	128	24215845	-	LA3146	-	hypothetical protein
3146	 33.68	0	3131340..3132203	+	287	24215846	-	LA3147	-	alpha/beta fold family hydrolase/acetyltransferase
3147	 35.74	0	3132680..3133012	+	110	24215847	-	LA3148	-	hypothetical protein
3148	 36.63	0	3133058..3135391	+	777	24215848	-	LA3149	-	hemin receptor
3149	 37.07	0	3135402..3135776	+	124	24215849	-	LA3150	-	hypothetical protein
3150	 29.01	-1	3135821..3135982	-	53	24215850	-	LA3151	-	hypothetical protein
3151	 39.43	0	3136320..3136877	-	185	24215851	-	LA3152	-	CopG family transcriptional regulator
3152	 22.22	-2	3138033..3138149	+	38	24215852	-	LA3153	-	hypothetical protein
3153	 23.27	-2	3138423..3138581	+	52	24215853	-	LA3154	-	hypothetical protein
3154	 32.42	0	3138623..3139282	+	219	24215854	-	LA3155	-	transposase
3155	 37.38	0	3139596..3141002	+	468	24215855	-	LA3156	-	flavin-containing monooxygenase
3156	 29.74	-1	3141090..3141284	-	64	24215856	-	LA3157	-	hypothetical protein
3157	 38.95	0	3141427..3142440	-	337	24215857	-	LA3158	-	alcohol dehydrogenase
3158	 24.11	-2	3142518..3142658	-	46	24215858	-	LA3159	-	hypothetical protein
3159	 39.46	0	3143227..3145218	+	663	24215859	gcpE	LA3160	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
3160	 34.64	0	3145303..3145455	-	50	24215860	-	LA3162	-	hypothetical protein
3161	 33.99	0	3145310..3145462	+	50	24215861	-	LA3161	-	hypothetical protein
3162	 31.48	0	3145576..3145683	+	35	24215862	-	LA3163	-	hypothetical protein
3163	 37.61	0	3146789..3147442	-	217	24215863	-	LA3165	-	MORN repeat-containing protein
3164	 31.29	0	3147421..3147567	+	48	24215864	-	LA3164	-	hypothetical protein
3165	 39.50	0	3147755..3148597	-	280	24215865	-	LA3166	-	DNA repair exonuclease
3166	 36.87	0	3148654..3149727	-	357	24215866	-	LA3167	-	transposase
3167	 31.57	0	3149971..3150366	-	131	24215867	-	LA3168	-	hypothetical protein
3168	 33.80	0	3150373..3150585	+	70	24215868	-	LA3169	-	hypothetical protein
3169	 35.67	0	3150566..3152236	+	556	24215869	-	LA3170	-	sigma factor sigB regulation protein rsbU
3170	 30.99	0	3152657..3152869	+	70	24215870	-	LA3171	-	hypothetical protein
3171	 35.01	0	3153463..3154299	+	278	24215871	-	LA3172	-	aldehyde reductase
3172	 39.21	0	3154665..3156161	+	498	24215872	-	LA3173	-	ABC transporter ATP-binding protein
3173	 43.69	+1	3156387..3156608	-	73	24215873	-	LA3174	-	hypothetical protein
3174	 33.33	0	3157100..3157651	+	183	24215874	-	LA3175	-	hypothetical protein
3175	 30.13	-1	3157847..3158002	-	51	24215875	-	LA3177	-	hypothetical protein
3176	 41.86	+1	3157994..3158380	+	128	24215876	-	LA3176	-	hypothetical protein
3177	 32.55	0	3158564..3158818	-	84	24215877	-	LA3178	-	hypothetical protein
3178	 35.39	0	3159038..3159913	+	291	24215878	-	LA3179	-	hypothetical protein
3179	 32.00	0	3160062..3160361	+	99	24215879	-	LA3180	-	hypothetical protein
3180	 40.23	+1	3161119..3162771	+	550	24215880	-	LA3181	-	hypothetical protein
3181	 37.54	0	3162771..3163055	+	94	24215881	-	LA3182	-	hypothetical protein
3182	 32.03	0	3163172..3163324	-	50	24215882	-	LA3183	-	hypothetical protein
3183	 42.67	+1	3163546..3163770	-	74	24215883	-	LA3184	-	hypothetical protein
3184	 40.11	+1	3164164..3164340	-	58	24215884	-	LA3185	-	hypothetical protein
3185	 39.95	+1	3164664..3165041	-	125	24215885	-	LA3186	-	hypothetical protein
3186	 40.74	+1	3165656..3165925	-	89	24215886	-	LA3187	-	hypothetical protein
3187	 22.02	-2	3166661..3166828	+	55	24215887	-	LA3188	-	hypothetical protein
3188	 43.92	+1	3166848..3167480	+	210	24215888	-	LA3189	-	hypothetical protein
3189	 45.29	+2	3167477..3169735	+	752	24215889	-	LA3190	-	ATP-dependent RNA helicase
3190	 42.89	+1	3169737..3171620	+	627	24215890	-	LA3191	-	hypothetical protein
3191	 47.74	+2	3171685..3172524	+	279	24215891	devR	LA3192	-	fruiting body developmental protein R-like protein
3192	 48.24	+2	3172545..3173168	+	207	24215892	devS	LA3193	-	fruiting body developmental protein S-like protein
3193	 40.74	+1	3174013..3174120	-	35	24215893	-	LA3194	-	hypothetical protein
3194	 36.78	0	3174371..3175444	+	357	24215894	-	LA3195	-	transposase
3195	 38.73	0	3175656..3176174	+	172	24215895	-	LA3196	-	hypothetical protein
3196	 44.23	+1	3176524..3178065	+	513	24215896	hsdM	LA3197	-	Type I restriction enzyme EcoR124II M protein
3197	 39.16	0	3178062..3179297	+	411	24215897	prrB	LA3198	-	Type I restriction enzyme EcoprrI specificity protein
3198	 38.53	0	3179294..3179851	+	185	24215898	-	LA3199	-	anticodon nuclease
3199	 41.35	+1	3179832..3180767	+	311	24215899	-	LA3200	-	restriction enzyme type I helicase subunits and related helicases
3200	 43.37	+1	3181159..3181686	+	175	24215900	-	LA3201	-	retinoic acid-inducible E3-like protein
3201	 43.40	+1	3181226..3181702	+	158	24215901	-	LA3202	-	hypothetical protein
3202	 36.46	0	3181826..3182017	+	63	24215902	-	LA3203	-	hypothetical protein
3203	 37.93	0	3182110..3183132	-	340	24215903	-	LA3205	-	metallo-beta-lactamase superfamily protein
3204	 31.86	0	3183121..3183324	+	67	24215904	-	LA3204	-	hypothetical protein
3205	 38.32	0	3183396..3183836	-	146	24215905	-	LA3206	-	two-component response regulator
3206	 38.59	0	3183800..3187297	-	1165	24215906	-	LA3207	-	two-component hybrid sensor and regulator
3207	 28.83	-1	3187828..3187938	-	36	24215907	-	LA3208	-	hypothetical protein
3208	 33.33	0	3188327..3188596	+	89	24215908	-	LA3209	-	hypothetical protein
3209	 41.01	+1	3188638..3189393	+	251	24215909	-	LA3210	-	hypothetical protein
3210	 37.68	0	3189545..3189682	-	45	24215910	-	LA3212	-	hypothetical protein
3211	 27.27	-1	3189667..3189864	+	65	24215911	-	LA3211	-	hypothetical protein
3212	 34.96	0	3189836..3190510	-	224	24215912	-	LA3213	-	hypothetical protein
3213	 40.48	+1	3190552..3191055	-	167	24215913	-	LA3214	-	hypothetical protein
3214	 28.57	-1	3191674..3191862	+	62	24215914	-	LA3215	-	hypothetical protein
3215	 35.94	0	3192271..3193230	-	319	24215915	ispB	LA3216	-	octoprenyl-diphosphate synthase
3216	 35.36	0	3193282..3194268	-	328	24215916	-	LA3217	-	hypothetical protein
3217	 26.44	-1	3194820..3195080	+	86	24215917	-	LA3218	-	hypothetical protein
3218	 38.87	0	3195327..3196193	-	288	24215918	tktN2	LA3219	-	transketolase N-terminal section
3219	 34.32	0	3196214..3196618	-	134	24215919	-	LA3220	-	hypothetical protein
3220	 25.93	-1	3197456..3197617	-	53	24215920	-	LA3221	-	hypothetical protein
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.