IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3069	 34.50	0	3039422..3039763	-	113	24215769	-	LA3070	-	anti-sigma factor antagonist
3070	 38.96	0	3039941..3040936	+	331	24215770	-	LA3071	-	glycosyl transferase
3071	 35.03	0	3040969..3042849	+	626	24215771	-	LA3072	-	hypothetical protein
3072	 27.50	-1	3042944..3043063	+	39	24215772	-	LA3073	-	hypothetical protein
3073	 26.67	-1	3044246..3044365	-	39	24215773	-	LA3074	-	hypothetical protein
3074	 42.04	+1	3044798..3050668	+	1956	24215774	-	LA3075	-	surface protein Lk90-like protein
3075	 36.69	0	3050681..3051067	+	128	24215775	-	LA3076	-	hypothetical protein
3076	 36.00	0	3051055..3051579	+	174	24215776	-	LA3077	-	hypothetical protein
3077	 31.99	0	3051617..3052435	-	272	24215777	-	LA3078	-	sterol desaturase family protein
3078	 33.97	0	3054623..3055405	-	260	24215778	-	LA3079	-	hypothetical protein
3079	 40.78	+1	3055406..3056707	-	433	24215779	purB	LA3080	-	adenylosuccinate lyase
3080	 27.78	-1	3056724..3056885	-	53	24215780	-	LA3081	-	hypothetical protein
3081	 46.20	+2	3057204..3057374	+	56	24215781	-	LA3082	-	hypothetical protein
3082	 36.42	0	3057407..3058474	-	355	24215782	-	LA3083	-	hypothetical protein
3083	 34.74	0	3058485..3060329	-	614	24215783	-	LA3084	-	peptide ABC transporter, periplasmic peptide-binding protein
3084	 38.37	0	3060298..3062340	-	680	24215784	relA	LA3085	-	GTP pyrophosphokinase
3085	 38.14	0	3062327..3063241	-	304	24215785	nadC	LA3086	-	nicotinate-nucleotide pyrophosphorylase
3086	 32.59	0	3063264..3063398	-	44	24215786	-	LA3087	-	hypothetical protein
3087	 31.75	0	3063379..3063504	-	41	24215787	-	LA3088	-	hypothetical protein
3088	 29.06	-1	3063982..3064098	-	38	24215788	-	LA3089	-	hypothetical protein
3089	 46.38	+2	3064117..3064254	-	45	24215789	-	LA3090	-	16S ribosomal RNA
3090	 32.80	0	3067777..3068526	+	249	24215790	-	LA3091	-	hypothetical protein
3091	 37.14	0	3069370..3071262	-	630	24215791	-	LA3093	-	M23/M37 familypeptidase
3092	 40.64	+1	3071213..3071773	+	186	24215792	-	LA3092	-	hypothetical protein
3093	 34.37	0	3071804..3072286	+	160	24215793	-	LA3094	-	Fe2+/Zn2+ uptake regulation proteins
3094	 39.73	0	3072283..3073407	+	374	24215794	-	LA3095	-	tRNA-guanine transglycosylase
3095	 34.52	0	3073478..3073813	+	111	24215795	-	LA3096	-	anti-sigma factor antagonist
3096	 39.27	0	3073861..3075528	+	555	24215796	tmpB	LA3097	-	treponemal membrane protein B precursor-like protein
3097	 23.26	-2	3075990..3076118	-	42	24215797	-	LA3098	-	hypothetical protein
3098	 38.44	0	3077613..3077984	-	123	24215798	-	LA3099	-	transposase
3099	 33.23	0	3078169..3079098	-	309	24215799	-	LA3100	-	alpha/beta fold family hydrolase/acetyltransferase
3100	 34.04	0	3079504..3080496	+	330	24215800	-	LA3101	-	hypothetical protein
3101	 33.46	0	3080587..3082866	-	759	24215801	-	LA3102	-	hypothetical protein
3102	 40.35	+1	3083485..3083883	-	132	24215802	-	LA3103	-	hypothetical protein
3103	 32.44	0	3084310..3085203	-	297	24215803	-	LA3104	-	hypothetical protein
3104	 28.70	-1	3085204..3085419	+	71	24215804	-	LA3105	-	hypothetical protein
3105	 38.48	0	3086208..3086615	+	135	24215805	-	LA3106	-	hypothetical protein
3106	 40.42	+1	3086612..3087331	+	239	24215806	-	LA3107	-	hypothetical protein
3107	 39.33	0	3087641..3088324	-	227	24215807	kdpE	LA3108	-	regulatory protein KdpE
3108	 36.78	0	3088328..3090940	-	870	24215808	kdpD	LA3109	-	two-component sensor KdpD
3109	 37.34	0	3090937..3091560	-	207	24215809	kdpC	LA3110	-	potassium-transporting ATPase, C chain
3110	 39.59	0	3091506..3093599	-	697	24215810	kdpB	LA3111	-	potassium-transporting ATPase, B chain
3111	 36.44	0	3093610..3095283	-	557	24215811	kdpA	LA3112	-	potassium-transporting ATPase subunit A
3112	 31.47	0	3095529..3100724	-	1731	24215812	-	LA3113	-	Serine/threonine protein kinase
3113	 36.05	0	3100925..3102988	-	687	24215813	-	LA3114	-	hypothetical protein
3114	 36.36	0	3103085..3104008	-	307	24215814	-	LA3115	-	hypothetical protein
3115	 27.16	-1	3104774..3104935	+	53	24215815	-	LA3116	-	hypothetical protein
3116	 32.14	0	3105250..3105669	+	139	24215816	-	LA3117	-	hypothetical protein
3117	 35.69	0	3106449..3107510	-	353	24215817	-	LA3118	-	hypothetical protein
3118	 39.11	0	3107512..3108480	-	322	24215818	-	LA3119	-	hypothetical protein
3119	 36.23	0	3108551..3110071	+	506	24215819	-	LA3120	-	zinc-binding carboxypeptidase
3120	 36.09	0	3110071..3110976	+	301	24215820	-	LA3121	-	permease
3121	 37.07	0	3111139..3111459	+	106	24215821	-	LA3122	-	hypothetical protein
3122	 30.46	0	3111528..3111701	-	57	24215822	-	LA3123	-	hypothetical protein
3123	 23.68	-2	3111706..3111819	-	37	24215823	-	LA3124	-	hypothetical protein
3124	 32.18	0	3112140..3112313	-	57	24215824	-	LA3125	-	hypothetical protein
3125	 35.11	0	3112573..3113361	+	262	24215825	-	LA3126	-	hypothetical protein
3126	 35.31	0	3113366..3114274	+	302	24215826	nctP2	LA3127	-	sodium bile acid symporter family Na(+) dependent transporter
3127	 35.51	0	3114258..3115361	-	367	24215827	-	LA3128	-	hypothetical protein
3128	 28.07	-1	3115512..3115625	+	37	24215828	-	LA3129	-	hypothetical protein
3129	 28.57	-1	3115689..3115793	-	34	24215829	-	LA3130	-	hypothetical protein
3130	 27.67	-1	3116199..3116357	-	52	24215830	-	LA3132	-	hypothetical protein
3131	 27.78	-1	3116332..3116457	+	41	24215831	-	LA3131	-	hypothetical protein
3132	 31.13	0	3117584..3118765	+	393	24215832	-	LA3133	-	AraC family transcriptional regulator
3133	 37.78	0	3119516..3119650	+	44	24215833	-	LA3134	-	hypothetical protein
3134	 42.00	+1	3119989..3121200	+	403	24215834	fadE	LA3135	-	acetyl-CoA acetyltransferase
3135	 28.46	-1	3122086..3122208	-	40	24215835	-	LA3136	-	hypothetical protein
3136	 25.56	-1	3122198..3122596	-	132	24215836	-	LA3137	-	hypothetical protein
3137	 41.72	+1	3122777..3123790	+	337	24215837	ompL1	LA3138	-	transmembrane outer membrane protein L1
3138	 33.96	0	3123894..3124853	-	319	24215838	-	LA3139	-	lipoprotein
3139	 33.33	0	3125052..3125177	-	41	24215839	-	LA3140	-	hypothetical protein
3140	 30.13	-1	3125652..3125807	+	51	24215840	-	LA3141	-	hypothetical protein
3141	 33.84	0	3126095..3126292	-	65	24215841	-	LA3142	-	hypothetical protein
3142	 41.61	+1	3126270..3127526	-	418	24215842	-	LA3143	-	Acyl-CoA dehydrogenase
3143	 37.60	0	3127708..3128880	-	390	24215843	-	LA3144	-	Alpha-methylacyl-CoA racemase
3144	 37.33	0	3129315..3130391	+	358	24215844	-	LA3145	-	NHL repeat-containing protein
3145	 38.24	0	3130906..3131292	-	128	24215845	-	LA3146	-	hypothetical protein
3146	 33.68	0	3131340..3132203	+	287	24215846	-	LA3147	-	alpha/beta fold family hydrolase/acetyltransferase
3147	 35.74	0	3132680..3133012	+	110	24215847	-	LA3148	-	hypothetical protein
3148	 36.63	0	3133058..3135391	+	777	24215848	-	LA3149	-	hemin receptor
3149	 37.07	0	3135402..3135776	+	124	24215849	-	LA3150	-	hypothetical protein
3150	 29.01	-1	3135821..3135982	-	53	24215850	-	LA3151	-	hypothetical protein
3151	 39.43	0	3136320..3136877	-	185	24215851	-	LA3152	-	CopG family transcriptional regulator
3152	 22.22	-2	3138033..3138149	+	38	24215852	-	LA3153	-	hypothetical protein
3153	 23.27	-2	3138423..3138581	+	52	24215853	-	LA3154	-	hypothetical protein
3154	 32.42	0	3138623..3139282	+	219	24215854	-	LA3155	-	transposase
3155	 37.38	0	3139596..3141002	+	468	24215855	-	LA3156	-	flavin-containing monooxygenase
3156	 29.74	-1	3141090..3141284	-	64	24215856	-	LA3157	-	hypothetical protein
3157	 38.95	0	3141427..3142440	-	337	24215857	-	LA3158	-	alcohol dehydrogenase
3158	 24.11	-2	3142518..3142658	-	46	24215858	-	LA3159	-	hypothetical protein
3159	 39.46	0	3143227..3145218	+	663	24215859	gcpE	LA3160	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
3160	 34.64	0	3145303..3145455	-	50	24215860	-	LA3162	-	hypothetical protein
3161	 33.99	0	3145310..3145462	+	50	24215861	-	LA3161	-	hypothetical protein
3162	 31.48	0	3145576..3145683	+	35	24215862	-	LA3163	-	hypothetical protein
3163	 37.61	0	3146789..3147442	-	217	24215863	-	LA3165	-	MORN repeat-containing protein
3164	 31.29	0	3147421..3147567	+	48	24215864	-	LA3164	-	hypothetical protein
3165	 39.50	0	3147755..3148597	-	280	24215865	-	LA3166	-	DNA repair exonuclease
3166	 36.87	0	3148654..3149727	-	357	24215866	-	LA3167	-	transposase
3167	 31.57	0	3149971..3150366	-	131	24215867	-	LA3168	-	hypothetical protein
3168	 33.80	0	3150373..3150585	+	70	24215868	-	LA3169	-	hypothetical protein
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.