IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2959	 36.11	0	2938615..2938758	-	47	24215659	-	LA2960	-	hypothetical protein
2960	 25.40	-1	2938951..2939076	-	41	24215660	-	LA2961	-	hypothetical protein
2961	 31.61	0	2939779..2939952	-	57	24215661	-	LA2962	-	hypothetical protein
2962	 40.40	+1	2940011..2940562	+	183	24215662	-	LA2963	-	hypothetical protein
2963	 41.67	+1	2940828..2940935	-	35	24215663	-	LA2965	-	hypothetical protein
2964	 33.49	0	2940924..2942204	+	426	24215664	-	LA2964	-	leucine-rich repeat-containing protein
2965	 34.39	0	2942232..2943458	+	408	24215665	-	LA2966	-	leucine-rich repeat-containing protein
2966	 38.10	0	2943455..2943769	+	104	24215666	-	LA2967	-	hypothetical protein
2967	 37.03	0	2943766..2945091	-	441	24215667	cyaA11	LA2968	-	adenylate cyclase
2968	 35.68	0	2945895..2946788	-	297	24215668	-	LA2969	-	glycosyl transferase
2969	 33.04	0	2947162..2949222	-	686	24215669	-	LA2971	-	hypothetical protein
2970	 33.74	0	2949179..2949664	+	161	24215670	-	LA2970	-	hypothetical protein
2971	 34.47	0	2949661..2950098	+	145	24215671	-	LA2972	-	hypothetical protein
2972	 39.98	+1	2950214..2951161	+	315	24215672	-	LA2973	-	hypothetical protein
2973	 41.02	+1	2951328..2952407	+	359	24215673	-	LA2974	-	methylamine utilization protein mauG
2974	 37.43	0	2952379..2953257	+	292	24215674	-	LA2975	-	hypothetical protein
2975	 35.26	0	2953257..2954243	+	328	24215675	-	LA2976	-	hypothetical protein
2976	 32.01	0	2954425..2955789	+	454	24215676	-	LA2977	-	RNA methyltransferase
2977	 33.25	0	2956379..2957524	-	381	24215677	-	LA2978	-	sodium/neurotransmitter symporter family protein
2978	 37.75	0	2957769..2957972	+	67	24215678	-	LA2979	-	hypothetical protein
2979	 39.02	0	2957969..2959093	+	374	24215679	-	LA2980	-	lipoprotein
2980	 25.00	-2	2959721..2959852	-	43	24215680	-	LA2981	-	hypothetical protein
2981	 36.01	0	2959913..2960509	+	198	24215681	-	LA2982	-	ABC transporter, ATP-binding protein
2982	 33.33	0	2960515..2962989	+	824	24215682	-	LA2983	-	hypothetical protein
2983	 37.72	0	2963050..2963961	+	303	24215683	-	LA2984	-	hypothetical protein
2984	 31.25	0	2964497..2964640	-	47	24215684	-	LA2985	-	hypothetical protein
2985	 33.04	0	2964793..2965485	+	230	24215685	-	LA2986	-	hypothetical protein
2986	 31.88	0	2965533..2966291	-	252	24215686	-	LA2987	-	hypothetical protein
2987	 38.80	0	2966233..2966817	-	194	24215687	pyrE	LA2988	-	orotate phosphoribosyltransferase 1
2988	 32.38	0	2966810..2966914	-	34	24215688	-	LA2990	-	hypothetical protein
2989	 37.48	0	2966913..2968841	+	642	24215689	nadE	LA2989	-	glutamine-dependent NAD(+) synthetase
2990	 30.00	-1	2969584..2969733	+	49	24215690	-	LA2991	-	hypothetical protein
2991	 38.63	0	2969765..2970463	-	232	24215691	-	LA2992	-	hypothetical protein
2992	 39.82	0	2970548..2971318	+	256	24215692	-	LA2993	-	hypothetical protein
2993	 37.98	0	2971315..2972067	+	250	24215693	-	LA2994	-	methyltransferase
2994	 38.58	0	2972080..2972403	+	107	24215694	-	LA2995	-	hypothetical protein
2995	 37.96	0	2972480..2973646	+	388	24215695	dhaT	LA2996	-	1,3-propanediol dehydrogenase
2996	 34.29	0	2974649..2975383	+	244	24215696	acm	LA2997	-	glycosyl hydrolase/lysozyme
2997	 38.32	0	2976014..2976334	+	106	24215697	-	LA2998	-	hypothetical protein
2998	 37.37	0	2976337..2978268	+	643	24215698	recJ	LA2999	-	single-stranded-DNA-specific exonuclease recJ
2999	 36.30	0	2978860..2978994	-	44	24215699	-	LA3001	-	hypothetical protein
3000	 44.70	+2	2978951..2979082	+	43	24215700	-	LA3000	-	hypothetical protein
3001	 36.89	0	2979090..2980553	-	487	24215701	pcnB	LA3002	-	poly(A) polymerase
3002	 40.61	+1	2980607..2981623	+	338	24215702	-	LA3003	-	M23/M37 familypeptidase
3003	 36.68	0	2982022..2982978	+	318	24215703	-	LA3004	-	prolipoprotein diacylglyceryl transferase
3004	 35.74	0	2983647..2984270	-	207	24215704	-	LA3005	-	hypothetical protein
3005	 43.70	+1	2984448..2984582	+	44	24215705	-	LA3006	-	hypothetical protein
3006	 26.98	-1	2984819..2984944	+	41	24215706	-	LA3007	-	hypothetical protein
3007	 28.46	-1	2985219..2985341	-	40	24215707	-	LA3008	-	hypothetical protein
3008	 39.84	0	2985499..2985621	-	40	24215708	-	LA3009	-	hypothetical protein
3009	 37.96	0	2985726..2985833	+	35	24215709	-	LA3010	-	hypothetical protein
3010	 36.60	0	2985889..2988735	-	948	24215710	ftsK	LA3011	-	cell division protein ftsK-like protein
3011	 36.40	0	2988971..2990341	+	456	24215711	-	LA3012	-	hypothetical protein
3012	 34.00	0	2990321..2990470	-	49	24215712	-	LA3013	-	hypothetical protein
3013	 29.25	-1	2990566..2990712	+	48	24215713	-	LA3014	-	hypothetical protein
3014	 40.58	+1	2991218..2991355	+	45	24215714	-	LA3015	-	hypothetical protein
3015	 37.73	0	2991379..2991651	+	90	24215715	-	LA3016	-	hypothetical protein
3016	 34.90	0	2991742..2992314	+	190	24215716	-	LA3017	-	hypothetical protein
3017	 33.55	0	2992477..2993844	+	455	24215717	-	LA3018	-	hypothetical protein
3018	 31.91	0	2993860..2994423	+	187	24215718	-	LA3019	-	hypothetical protein
3019	 35.79	0	2994427..2994792	+	121	24215719	-	LA3020	-	hypothetical protein
3020	 28.83	-1	2994772..2994882	-	36	24215720	-	LA3021	-	hypothetical protein
3021	 36.74	0	2995537..2995947	-	136	24215721	-	LA3022	-	hypothetical protein
3022	 26.80	-1	2996822..2996974	+	50	24215722	-	LA3023	-	hypothetical protein
3023	 34.89	0	2996997..2997638	+	213	24215723	-	LA3024	-	hypothetical protein
3024	 41.87	+1	2997694..2997939	-	81	24215724	-	LA3025	-	hypothetical protein
3025	 38.25	0	2998644..2999741	-	365	24215725	-	LA3026	-	hypothetical protein
3026	 29.79	-1	3000354..3000494	+	46	24215726	-	LA3027	-	hypothetical protein
3027	 30.47	0	3000858..3002915	+	685	24215727	-	LA3028	-	leucine-rich repeat-containing protein
3028	 38.91	0	3003084..3004499	-	471	24215728	-	LA3029	-	ankyrin repeat-containing protein
3029	 31.33	0	3004830..3004979	+	49	24215729	-	LA3030	-	hypothetical protein
3030	 40.44	+1	3005113..3006069	+	318	24215730	-	LA3031	-	hypothetical protein
3031	 28.79	-1	3006063..3006194	+	43	24215731	-	LA3032	-	hypothetical protein
3032	 37.18	0	3006277..3007107	+	276	24215732	-	LA3033	-	molybdate metabolism regulator
3033	 33.33	0	3007279..3007401	-	40	24215733	-	LA3034	-	hypothetical protein
3034	 37.72	0	3007362..3007589	-	75	24215734	-	LA3035	-	hypothetical protein
3035	 37.31	0	3007770..3008096	-	108	24215735	-	LA3036	-	hypothetical protein
3036	 34.76	0	3007988..3008338	-	116	24215736	-	LA3037	-	hypothetical protein
3037	 21.38	-2	3008354..3008512	-	52	24215737	-	LA3038	-	hypothetical protein
3038	 33.76	0	3008548..3009720	-	390	24215738	-	LA3039	-	hypothetical protein
3039	 23.40	-2	3009710..3009850	-	46	24215739	-	LA3040	-	hypothetical protein
3040	 35.24	0	3010504..3011760	+	418	24215740	cyaA12	LA3041	-	adenylate cyclase
3041	 29.07	-1	3011965..3012480	+	171	24215741	-	LA3042	-	hypothetical protein
3042	 34.13	0	3012937..3013062	-	41	24215742	-	LA3045	-	hypothetical protein
3043	 32.56	0	3012952..3013080	+	42	24215743	-	LA3043	-	hypothetical protein
3044	 26.39	-1	3013055..3013270	+	71	24215744	-	LA3044	-	hypothetical protein
3045	 39.22	0	3013331..3013483	+	50	24215745	-	LA3046	-	hypothetical protein
3046	 32.24	0	3013480..3014028	+	182	24215746	-	LA3047	-	hypothetical protein
3047	 30.70	0	3014827..3014940	+	37	24215747	-	LA3048	-	hypothetical protein
3048	 34.75	0	3015476..3015898	+	140	24215748	-	LA3049	-	hypothetical protein
3049	 34.17	0	3016001..3016720	-	239	24215749	sph4	LA3050	-	hemolytic protein-like protein
3050	 36.96	0	3017063..3017833	-	256	24215750	murI	LA3051	-	glutamate racemase
3051	 41.00	+1	3017866..3019170	-	434	24215751	-	LA3052	-	aminotransferase
3052	 39.31	0	3019211..3020347	-	378	24215752	-	LA3054	-	serine protease DO
3053	 33.42	0	3020307..3021413	+	368	24215753	-	LA3053	-	hypothetical protein
3054	 35.71	0	3021440..3021817	+	125	24215754	-	LA3055	-	hypothetical protein
3055	 34.58	0	3021845..3022807	+	320	24215755	-	LA3056	-	hypothetical protein
3056	 19.14	-2	3022816..3022977	+	53	24215756	-	LA3057	-	hypothetical protein
3057	 31.58	0	3023423..3023536	+	37	24215757	-	LA3058	-	hypothetical protein
3058	 38.06	0	3023605..3023964	-	119	24215758	-	LA3059	-	hypothetical protein
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.