IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.02   STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2676	 32.55	0	2660858..2663146	-	762	24215376	-	LA2676	-	hypothetical protein
2677	 39.30	0	2663389..2663589	-	66	24215377	-	LA2677	-	hypothetical protein
2678	 30.89	0	2664013..2664258	-	81	24215378	-	LA2678	-	hypothetical protein
2679	 38.33	0	2664384..2664683	+	99	24215379	-	LA2679	-	transposase
2680	 36.98	0	2664683..2665531	+	282	24215380	-	LA2680	-	transposase
2681	 33.20	0	2665559..2667088	-	509	24215381	-	LA2681	-	hypothetical protein
2682	 32.47	0	2667127..2668515	-	462	24215382	-	LA2682	-	hypothetical protein
2683	 29.35	-1	2668962..2669513	-	183	24215383	-	LA2683	-	hypothetical protein
2684	 30.42	0	2669599..2670078	-	159	24215384	-	LA2684	-	hypothetical protein
2685	 30.78	0	2670145..2670732	-	195	24215385	-	LA2685	-	hypothetical protein
2686	 31.29	0	2670717..2671058	-	113	24215386	-	LA2686	-	hypothetical protein
2687	 37.05	0	2671410..2672699	-	429	24215387	pepP	LA2687	-	Xaa-Pro aminopeptidase
2688	 34.73	0	2672696..2673766	-	356	24215388	rfaF2	LA2688	-	ADP-heptose:LPS heptosyltransferase
2689	 38.51	0	2673741..2674898	-	385	24215389	thl	LA2689	-	3-ketoacyl-CoA thiolase
2690	 33.15	0	2674937..2675473	+	178	24215390	-	LA2690	-	bacterioferrin
2691	 36.45	0	2675470..2676720	+	416	24215391	-	LA2691	-	hypothetical protein
2692	 34.41	0	2676736..2677848	+	370	24215392	-	LA2692	-	acetylglutamate kinase
2693	 42.96	+1	2677886..2678290	-	134	24215393	-	LA2693	-	hypothetical protein
2694	 30.26	0	2678408..2678602	+	64	24215394	-	LA2694	-	hypothetical protein
2695	 29.52	-1	2678846..2678950	-	34	24215395	-	LA2695	-	hypothetical protein
2696	 26.39	-1	2679017..2679160	+	47	24215396	-	LA2696	-	hypothetical protein
2697	 35.65	0	2679264..2679608	+	114	24215397	-	LA2697	-	hypothetical protein
2698	 34.50	0	2679585..2680271	-	228	24215398	-	LA2698	-	hypothetical protein
2699	 34.04	0	2680284..2681408	-	374	24215399	-	LA2699	-	D-alanine--D-alanine ligase
2700	 36.37	0	2681401..2682651	-	416	24215400	-	LA2701	-	L-lysine 2,3-aminomutase
2701	 37.72	0	2682625..2682738	+	37	24215401	-	LA2700	-	hypothetical protein
2702	 37.78	0	2682735..2683409	+	224	24215402	-	LA2702	-	phosphoglycolate phosphatase
2703	 36.17	0	2683453..2684262	+	269	24215403	-	LA2703	-	hypothetical protein
2704	 35.61	0	2684376..2685605	+	409	24215404	-	LA2704	-	GGDEF family protein
2705	 39.01	0	2685589..2685993	-	134	24215405	-	LA2705	-	lipoprotein
2706	 38.86	0	2686817..2687920	-	367	24215406	-	LA2706	-	biotin synthetase
2707	 30.25	0	2688186..2688347	-	53	24215407	-	LA2707	-	hypothetical protein
2708	 34.55	0	2688825..2688989	-	54	24215408	-	LA2708	-	hypothetical protein
2709	 33.52	0	2689392..2690447	-	351	24215409	-	LA2709	-	glycosyl transferase
2710	 25.93	-1	2690532..2690666	+	44	24215410	-	LA2710	-	hypothetical protein
2711	 34.83	0	2690674..2692608	-	644	24215411	-	LA2711	-	hypothetical protein
2712	 40.62	+1	2693115..2695214	+	699	24215412	-	LA2712	-	iron-sulphur-binding reductase
2713	 28.22	-1	2696374..2696823	-	149	24215413	-	LA2713	-	hypothetical protein
2714	 25.86	-1	2697111..2697284	-	57	24215414	-	LA2714	-	hypothetical protein
2715	 27.41	-1	2697281..2698225	-	314	24215415	-	LA2715	-	sensory transduction histidine kinase
2716	 27.19	-1	2698245..2698358	+	37	24215416	-	LA2716	-	hypothetical protein
2717	 28.60	-1	2698821..2699834	-	337	24215417	-	LA2717	-	two-component sensor histidine kinase
2718	 35.86	0	2700467..2701612	-	381	24215418	-	LA2718	-	hypothetical protein
2719	 32.29	0	2701609..2703915	-	768	24215419	-	LA2719	-	cytochrome b
2720	 37.85	0	2703997..2704173	-	58	24215420	-	LA2720	-	hypothetical protein
2721	 22.03	-2	2704399..2704575	-	58	24215421	-	LA2721	-	hypothetical protein
2722	 36.88	0	2704849..2705271	-	140	24215422	-	LA2722	-	hypothetical protein
2723	 34.66	0	2705381..2706211	-	276	24215423	-	LA2723	-	hypothetical protein
2724	 34.07	0	2706527..2706796	+	89	24215424	-	LA2724	-	hypothetical protein
2725	 22.00	-2	2706920..2707069	-	49	24215425	-	LA2725	-	hypothetical protein
2726	 41.56	+1	2707234..2708181	-	315	24215426	-	LA2727	-	2-nitropropane dioxygenase
2727	 35.26	0	2708170..2708532	+	120	24215427	-	LA2726	-	hypothetical protein
2728	 36.90	0	2708865..2709284	+	139	24215428	-	LA2728	-	hypothetical protein
2729	 36.87	0	2709735..2710808	-	357	24215429	-	LA2729	-	transposase
2730	 26.78	-1	2711908..2712426	-	172	24215430	-	LA2730	-	hypothetical protein
2731	 31.48	0	2712604..2712981	-	125	24215431	-	LA2731	-	hypothetical protein
2732	 34.06	0	2713234..2713371	+	45	24215432	-	LA2732	-	hypothetical protein
2733	 39.71	0	2714116..2715888	-	590	24215433	prfC	LA2733	-	peptide chain release factor 3
2734	 28.16	-1	2716220..2716393	-	57	24215434	-	LA2734	-	hypothetical protein
2735	 42.75	+1	2716440..2716970	-	176	24215435	accB	LA2735	-	biotin carboxyl carrier protein
2736	 39.69	0	2716937..2718400	-	487	24215436	accC2	LA2736	-	biotin carboxylase
2737	 37.22	0	2718397..2719194	-	265	24215437	-	LA2737	-	acyltransferase
2738	 36.40	0	2719428..2720537	-	369	24215438	-	LA2738	-	hypothetical protein
2739	 41.16	+1	2720682..2721563	+	293	24215439	-	LA2739	-	hypothetical protein
2740	 36.22	0	2721734..2722357	+	207	24215440	truA	LA2740	-	tRNA pseudouridine synthase A
2741	 40.17	+1	2722360..2723178	+	272	24215441	-	LA2741	-	hypothetical protein
2742	 40.00	+1	2723175..2724464	+	429	24215442	-	LA2742	-	hypothetical protein
2743	 23.81	-2	2724504..2724650	-	48	24215443	-	LA2743	-	hypothetical protein
2744	 30.92	0	2725098..2725304	+	68	24215444	-	LA2744	-	hypothetical protein
2745	 25.81	-1	2725631..2725816	+	61	24215445	-	LA2745	-	hypothetical protein
2746	 25.33	-2	2726198..2726347	-	49	24215446	-	LA2747	-	hypothetical protein
2747	 40.38	+1	2726334..2728121	+	595	24215447	-	LA2746	-	hypothetical protein
2748	 37.51	0	2728150..2729154	+	334	24215448	-	LA2748	-	Sulfate-binding protein precursor
2749	 35.52	0	2730337..2730747	-	136	24215449	-	LA2749	-	6-pyruvoyl tetrahydrobiopterin synthase
2750	 35.61	0	2730695..2730826	-	43	24215450	-	LA2750	-	hypothetical protein
2751	 41.67	+1	2730875..2731102	+	75	24215451	-	LA2751	-	hypothetical protein
2752	 29.49	-1	2731166..2731321	-	51	24215452	-	LA2752	-	hypothetical protein
2753	 32.69	0	2732634..2733416	-	260	24215453	-	LA2753	-	hypothetical protein
2754	 37.93	0	2733852..2735375	-	507	24215454	mreA	LA2754	-	rod shape-determining protein rodA
2755	 39.81	0	2735344..2737287	-	647	24215455	mrdA	LA2755	-	penicillin-binding protein
2756	 38.40	0	2737289..2737801	-	170	24215456	mreD	LA2756	-	rod shape-determining protein mreD
2757	 38.98	0	2737798..2738895	-	365	24215457	mreC	LA2757	-	rod shape-determining protein mreC
2758	 33.33	0	2738817..2738960	-	47	24215458	-	LA2758	-	hypothetical protein
2759	 43.79	+1	2738969..2739991	-	340	24215459	mreB	LA2759	-	rod shape-determining protein mreB
2760	 35.04	0	2740044..2740160	+	38	24215460	-	LA2760	-	hypothetical protein
2761	 37.56	0	2740183..2741745	+	520	24215461	-	LA2761	-	exopolyphosphatase
2762	 35.09	0	2742198..2742539	+	113	24215462	-	LA2762	-	hypothetical protein
2763	 41.21	+1	2744625..2744789	-	54	24215463	-	LA2763	-	hypothetical protein
2764	 39.10	0	2745088..2746458	+	456	24215464	-	LA2764	-	hypothetical protein
2765	 34.23	0	2746869..2747090	-	73	24215465	-	LA2765	-	hypothetical protein
2766	 31.58	0	2747115..2747228	+	37	24215466	-	LA2766	-	hypothetical protein
2767	 35.36	0	2747790..2748479	+	229	24215467	-	LA2767	-	hypothetical protein
2768	 34.43	0	2748548..2748730	+	60	24215468	-	LA2768	-	hypothetical protein
2769	 25.93	-1	2748847..2748954	-	35	24215469	-	LA2769	-	hypothetical protein
2770	 31.93	0	2749078..2750214	-	378	24215470	-	LA2770	-	hypothetical protein
2771	 33.47	0	2750412..2751836	-	474	24215471	-	LA2771	-	alginate O-acetylation protein
2772	 36.37	0	2751848..2753854	-	668	24215472	-	LA2772	-	GAF domain-containing protein
2773	 38.06	0	2754008..2757478	-	1156	24215473	-	LA2773	-	hypothetical protein
2774	 39.87	+1	2757491..2757796	-	101	24215474	-	LA2774	-	hypothetical protein
2775	 38.28	0	2757855..2758238	-	127	24215475	atpC	LA2775	-	F0F1 ATP synthase subunit epsilon
35.02	MEAN

4.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.