IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2631	 38.63	0	2616700..2617020	-	106	24215331	-	LA2631	-	hypothetical protein
2632	 41.43	+1	2617139..2618101	-	320	24215332	tktC2	LA2632	-	transketolase C-terminal section
2633	 40.31	+1	2618109..2619269	-	386	161484949	metK	LA2633	-	S-adenosylmethionine synthetase
2634	 34.34	0	2619440..2619838	+	132	24215334	-	LA2634	-	chromosome partitioning protein parB
2635	 23.15	-2	2619826..2619933	-	35	24215335	-	LA2636	-	hypothetical protein
2636	 22.88	-2	2619895..2620047	+	50	24215336	-	LA2635	-	hypothetical protein
2637	 43.35	+1	2620070..2620888	+	272	24215337	-	LA2637	-	LipL32 protein
2638	 28.92	-1	2621496..2621699	+	67	24215338	-	LA2638	-	hypothetical protein
2639	 37.19	0	2622335..2624095	+	586	24215339	-	LA2639	-	acyl-CoA dehydrogenase
2640	 29.35	-1	2624163..2624789	+	208	24215340	-	LA2640	-	hypothetical protein
2641	 34.32	0	2625561..2627801	+	746	24215341	-	LA2641	-	TonB-dependent receptor
2642	 32.31	0	2627885..2628079	+	64	24215342	-	LA2642	-	hypothetical protein
2643	 36.68	0	2628352..2629188	-	278	24215343	-	LA2644	-	HIV-1 Tat interactive protein-like protein
2644	 34.30	0	2629144..2630490	+	448	24215344	cyaA9	LA2643	-	adenylate cyclase
2645	 34.37	0	2630681..2631163	-	160	24215345	-	LA2645	-	hypothetical protein
2646	 26.36	-1	2631250..2631378	-	42	24215346	-	LA2646	-	hypothetical protein
2647	 34.97	0	2631399..2631581	-	60	24215347	-	LA2647	-	hypothetical protein
2648	 35.07	0	2631968..2632312	-	114	24215348	-	LA2648	-	hypothetical protein
2649	 33.72	0	2632602..2634152	-	516	24215349	-	LA2649	-	deoxyribodipyrimidine photolyase
2650	 17.02	-2	2634462..2634602	+	46	24215350	-	LA2650	-	hypothetical protein
2651	 39.00	0	2635172..2635471	+	99	24215351	-	LA2651	-	transposase
2652	 37.09	0	2635468..2636319	+	283	24215352	-	LA2652	-	integrase core subunit
2653	 26.67	-1	2636801..2636905	-	34	24215353	-	LA2653	-	hypothetical protein
2654	 43.64	+1	2638433..2638723	+	96	24215354	groES	LA2654	-	co-chaperonin GroES
2655	 42.41	+1	2638738..2640378	+	546	24215355	groEL	LA2655	-	chaperonin GroEL
2656	 34.67	0	2640482..2641153	+	223	24215356	-	LA2656	-	hypothetical protein
2657	 28.07	-1	2641128..2641241	-	37	24215357	-	LA2657	-	hypothetical protein
2658	 29.06	-1	2641409..2641525	-	38	24215358	-	LA2658	-	hypothetical protein
2659	 36.17	0	2642224..2643492	+	422	24215359	-	LA2659	-	hypothetical protein
2660	 41.47	+1	2643479..2644117	+	212	24215360	-	LA2660	-	sterol biosynthesis methyltransferase related protein-like protein
2661	 35.25	0	2644093..2644980	+	295	24215361	-	LA2661	-	3-demethylubiquinone-9 3-methyltransferase-like protein
2662	 34.71	0	2644984..2647233	+	749	24215362	-	LA2662	-	ribonuclease BN rbn
2663	 32.70	0	2647831..2648304	-	157	24215363	-	LA2663	-	hypothetical protein
2664	 38.06	0	2648301..2649401	-	366	24215364	flgI	LA2664	-	flagellar basal body P-ring protein
2665	 31.74	0	2649398..2650399	-	333	24215365	flgH	LA2665	-	flagellar L-ring protein precursor
2666	 36.25	0	2650396..2651286	-	296	24215366	flgA	LA2666	-	flagellar protein FlgA
2667	 42.73	+1	2651305..2652102	-	265	24215367	flgG	LA2667	-	flagellar basal body rod protein FlgG
2668	 34.29	0	2652828..2653979	-	383	24215368	-	LA2668	-	DNA modification methylase
2669	 32.54	0	2654433..2654558	-	41	24215369	-	LA2669	-	hypothetical protein
2670	 25.23	-2	2655568..2655678	+	36	24215370	-	LA2670	-	hypothetical protein
2671	 33.71	0	2655967..2656233	-	88	24215371	-	LA2671	-	hypothetical protein
2672	 33.43	0	2656805..2657821	+	338	24215372	-	LA2672	-	hypothetical protein
2673	 26.78	-1	2657938..2658120	-	60	24215373	-	LA2673	-	hypothetical protein
2674	 39.17	0	2658929..2660110	+	393	24215374	-	LA2674	-	N-acyl-L-amino acid amidohydrolase
2675	 27.03	-1	2660147..2660257	+	36	24215375	-	LA2675	-	hypothetical protein
2676	 32.55	0	2660858..2663146	-	762	24215376	-	LA2676	-	hypothetical protein
2677	 39.30	0	2663389..2663589	-	66	24215377	-	LA2677	-	hypothetical protein
2678	 30.89	0	2664013..2664258	-	81	24215378	-	LA2678	-	hypothetical protein
2679	 38.33	0	2664384..2664683	+	99	24215379	-	LA2679	-	transposase
2680	 36.98	0	2664683..2665531	+	282	24215380	-	LA2680	-	transposase
2681	 33.20	0	2665559..2667088	-	509	24215381	-	LA2681	-	hypothetical protein
2682	 32.47	0	2667127..2668515	-	462	24215382	-	LA2682	-	hypothetical protein
2683	 29.35	-1	2668962..2669513	-	183	24215383	-	LA2683	-	hypothetical protein
2684	 30.42	0	2669599..2670078	-	159	24215384	-	LA2684	-	hypothetical protein
2685	 30.78	0	2670145..2670732	-	195	24215385	-	LA2685	-	hypothetical protein
2686	 31.29	0	2670717..2671058	-	113	24215386	-	LA2686	-	hypothetical protein
2687	 37.05	0	2671410..2672699	-	429	24215387	pepP	LA2687	-	Xaa-Pro aminopeptidase
2688	 34.73	0	2672696..2673766	-	356	24215388	rfaF2	LA2688	-	ADP-heptose:LPS heptosyltransferase
2689	 38.51	0	2673741..2674898	-	385	24215389	thl	LA2689	-	3-ketoacyl-CoA thiolase
2690	 33.15	0	2674937..2675473	+	178	24215390	-	LA2690	-	bacterioferrin
2691	 36.45	0	2675470..2676720	+	416	24215391	-	LA2691	-	hypothetical protein
2692	 34.41	0	2676736..2677848	+	370	24215392	-	LA2692	-	acetylglutamate kinase
2693	 42.96	+1	2677886..2678290	-	134	24215393	-	LA2693	-	hypothetical protein
2694	 30.26	0	2678408..2678602	+	64	24215394	-	LA2694	-	hypothetical protein
2695	 29.52	-1	2678846..2678950	-	34	24215395	-	LA2695	-	hypothetical protein
2696	 26.39	-1	2679017..2679160	+	47	24215396	-	LA2696	-	hypothetical protein
2697	 35.65	0	2679264..2679608	+	114	24215397	-	LA2697	-	hypothetical protein
2698	 34.50	0	2679585..2680271	-	228	24215398	-	LA2698	-	hypothetical protein
2699	 34.04	0	2680284..2681408	-	374	24215399	-	LA2699	-	D-alanine--D-alanine ligase
2700	 36.37	0	2681401..2682651	-	416	24215400	-	LA2701	-	L-lysine 2,3-aminomutase
2701	 37.72	0	2682625..2682738	+	37	24215401	-	LA2700	-	hypothetical protein
2702	 37.78	0	2682735..2683409	+	224	24215402	-	LA2702	-	phosphoglycolate phosphatase
2703	 36.17	0	2683453..2684262	+	269	24215403	-	LA2703	-	hypothetical protein
2704	 35.61	0	2684376..2685605	+	409	24215404	-	LA2704	-	GGDEF family protein
2705	 39.01	0	2685589..2685993	-	134	24215405	-	LA2705	-	lipoprotein
2706	 38.86	0	2686817..2687920	-	367	24215406	-	LA2706	-	biotin synthetase
2707	 30.25	0	2688186..2688347	-	53	24215407	-	LA2707	-	hypothetical protein
2708	 34.55	0	2688825..2688989	-	54	24215408	-	LA2708	-	hypothetical protein
2709	 33.52	0	2689392..2690447	-	351	24215409	-	LA2709	-	glycosyl transferase
2710	 25.93	-1	2690532..2690666	+	44	24215410	-	LA2710	-	hypothetical protein
2711	 34.83	0	2690674..2692608	-	644	24215411	-	LA2711	-	hypothetical protein
2712	 40.62	+1	2693115..2695214	+	699	24215412	-	LA2712	-	iron-sulphur-binding reductase
2713	 28.22	-1	2696374..2696823	-	149	24215413	-	LA2713	-	hypothetical protein
2714	 25.86	-1	2697111..2697284	-	57	24215414	-	LA2714	-	hypothetical protein
2715	 27.41	-1	2697281..2698225	-	314	24215415	-	LA2715	-	sensory transduction histidine kinase
2716	 27.19	-1	2698245..2698358	+	37	24215416	-	LA2716	-	hypothetical protein
2717	 28.60	-1	2698821..2699834	-	337	24215417	-	LA2717	-	two-component sensor histidine kinase
2718	 35.86	0	2700467..2701612	-	381	24215418	-	LA2718	-	hypothetical protein
2719	 32.29	0	2701609..2703915	-	768	24215419	-	LA2719	-	cytochrome b
2720	 37.85	0	2703997..2704173	-	58	24215420	-	LA2720	-	hypothetical protein
2721	 22.03	-2	2704399..2704575	-	58	24215421	-	LA2721	-	hypothetical protein
2722	 36.88	0	2704849..2705271	-	140	24215422	-	LA2722	-	hypothetical protein
2723	 34.66	0	2705381..2706211	-	276	24215423	-	LA2723	-	hypothetical protein
2724	 34.07	0	2706527..2706796	+	89	24215424	-	LA2724	-	hypothetical protein
2725	 22.00	-2	2706920..2707069	-	49	24215425	-	LA2725	-	hypothetical protein
2726	 41.56	+1	2707234..2708181	-	315	24215426	-	LA2727	-	2-nitropropane dioxygenase
2727	 35.26	0	2708170..2708532	+	120	24215427	-	LA2726	-	hypothetical protein
2728	 36.90	0	2708865..2709284	+	139	24215428	-	LA2728	-	hypothetical protein
2729	 36.87	0	2709735..2710808	-	357	24215429	-	LA2729	-	transposase
2730	 26.78	-1	2711908..2712426	-	172	24215430	-	LA2730	-	hypothetical protein
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.