IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2565	 33.58	0	2549659..2550066	+	135	24215265	-	LA2565	-	hypothetical protein
2566	 33.33	0	2550089..2550193	-	34	24215266	-	LA2566	-	hypothetical protein
2567	 28.95	-1	2550235..2550348	-	37	24215267	-	LA2567	-	hypothetical protein
2568	 43.03	+1	2550749..2551078	-	109	24215268	-	LA2568	-	hypothetical protein
2569	 36.63	0	2551171..2551656	-	161	24215269	ilvH	LA2569	-	acetolactate synthase 3 regulatory subunit
2570	 39.85	0	2551653..2553431	-	592	24215270	ilvB2	LA2570	-	acetolactate synthase large subunit
2571	 26.19	-1	2553554..2553721	-	55	24215271	-	LA2571	-	hypothetical protein
2572	 34.68	0	2553792..2554901	+	369	24215272	-	LA2572	-	TPR repeat-containing protein
2573	 26.32	-1	2555149..2555262	-	37	24215273	-	LA2573	-	hypothetical protein
2574	 34.24	0	2555450..2557990	+	846	24215274	tlpA	LA2574	-	methyl-accepting chemotaxis protein tlpA
2575	 40.00	+1	2558071..2558340	+	89	24215275	-	LA2575	-	hypothetical protein
2576	 35.33	0	2558681..2560684	-	667	24215276	-	LA2576	-	hypothetical protein
2577	 38.07	0	2560820..2562148	+	442	24215277	-	LA2577	-	ABC1 family protein kinase
2578	 39.84	0	2562145..2562390	+	81	24215278	-	LA2578	-	hypothetical protein
2579	 37.61	0	2562377..2564482	+	701	24215279	feoB	LA2579	-	ferrous iron transport protein B-like protein
2580	 35.66	0	2564347..2566449	+	700	24215280	-	LA2580	-	phosphoglycerol transferase/alkaline phosphatase superfamily protein
2581	 36.94	0	2566465..2567463	+	332	24215281	NnaB3	LA2581	-	N-acetyl neuramic acid synthetase NeuB
2582	 36.48	0	2567456..2568598	+	380	24215282	-	LA2582	-	M23/M37 familypeptidase
2583	 29.27	-1	2568796..2568918	-	40	24215283	-	LA2583	-	hypothetical protein
2584	 37.48	0	2569043..2570104	-	353	24215284	-	LA2584	-	hypothetical protein
2585	 30.79	0	2570663..2570977	+	104	24215285	-	LA2585	-	hypothetical protein
2586	 24.04	-2	2571031..2571213	+	60	24215286	-	LA2586	-	hypothetical protein
2587	 32.68	0	2571523..2572443	+	306	24215287	-	LA2587	-	hypothetical protein
2588	 30.03	-1	2573583..2573945	-	120	24215288	-	LA2588	-	hypothetical protein
2589	 41.23	+1	2573952..2574875	-	307	24215289	fliH	LA2589	-	flagellar assembly protein H
2590	 38.07	0	2574879..2575850	-	323	24215290	fliG4	LA2590	-	flagellar motor switch protein fliG
2591	 39.10	0	2575847..2577544	-	565	24215291	fliF	LA2591	-	flagellar MS-ring protein
2592	 41.68	+1	2578811..2580175	+	454	24215292	fliI	LA2592	-	flagellum-specific ATP synthase fliI
2593	 34.39	0	2580179..2580745	+	188	24215293	-	LA2593	-	flagellar protein FliJ-like protein
2594	 38.27	0	2580904..2581551	+	215	24215294	flaB5	LA2594	-	flagellar protein B
2595	 33.84	0	2581564..2581956	+	130	24215295	-	LA2595	-	hypothetical protein
2596	 28.02	-1	2582004..2582756	+	250	24215296	-	LA2596	-	hypothetical protein
2597	 30.77	0	2583271..2583387	-	38	24215297	-	LA2597	-	hypothetical protein
2598	 33.33	0	2584247..2584534	-	95	24215298	-	LA2598	-	guanylate kinase
2599	 37.94	0	2584825..2585106	-	93	24215299	-	LA2599	-	hypothetical protein
2600	 35.36	0	2585106..2586188	-	360	24215300	-	LA2600	-	hypothetical protein
2601	 39.83	0	2586204..2586557	-	117	24215301	-	LA2601	-	hypothetical protein
2602	 41.29	+1	2586566..2588551	-	661	24215302	-	LA2602	-	hypothetical protein
2603	 37.58	0	2588577..2589377	-	266	24215303	fliA	LA2603	-	RNA polymerase sigma factor WhiG
2604	 39.83	0	2589505..2589981	-	158	24215304	-	LA2604	-	hypothetical protein
2605	 40.55	+1	2589985..2590899	-	304	24215305	-	LA2605	-	ParA protein
2606	 38.38	0	2590927..2592213	-	428	24215306	flhF	LA2606	-	flagellar biosynthesis regulator FlhF
2607	 40.75	+1	2592260..2594377	-	705	24215307	flhA	LA2607	-	flagellar biosynthesis protein FlhA
2608	 36.62	0	2594387..2596336	-	649	24215308	flhB	LA2608	-	flagellar biosynthesis protein FlhB
2609	 38.33	0	2596324..2597103	-	259	24215309	FliR	LA2609	-	flagellar biosynthetic protein fliR
2610	 33.33	0	2597110..2597373	-	87	24215310	FliQ	LA2610	-	flagellar biosynthetic protein FliQ
2611	 37.69	0	2597370..2598173	-	267	24215311	fliP	LA2611	-	flagellar biosynthesis protein FliP
2612	 38.81	0	2598206..2599027	-	273	24215312	-	LA2612	-	flagellar protein required for flagellar formation
2613	 43.57	+1	2599024..2600088	-	354	24215313	fliY	LA2613	-	flagellar motor switch protein fliY
2614	 28.30	-1	2600183..2600341	-	52	24215314	-	LA2614	-	hypothetical protein
2615	 38.84	0	2600656..2600982	-	108	24215315	-	LA2615	-	hypothetical protein
2616	 38.10	0	2601346..2603487	-	713	24215316	-	LA2616	-	phosphatidylserine decarboxylase proenzyme
2617	 34.87	0	2603456..2603650	-	64	24215317	-	LA2618	-	hypothetical protein
2618	 39.79	0	2603634..2604500	+	288	24215318	-	LA2617	-	hypothetical protein
2619	 24.40	-2	2604595..2604762	-	55	24215319	-	LA2619	-	hypothetical protein
2620	 33.75	0	2604849..2606045	-	398	24215320	-	LA2620	-	sterol desaturase-related protein
2621	 39.31	0	2606052..2606804	-	250	24215321	-	LA2621	-	3-oxoacyl-[acyl-carrier protein] reductase
2622	 34.81	0	2606779..2606913	-	44	24215322	-	LA2622	-	hypothetical protein
2623	 36.99	0	2607024..2607680	+	218	24215323	-	LA2623	-	glutathione transferase
2624	 36.99	0	2607745..2607990	+	81	24215324	-	LA2624	-	hypothetical protein
2625	 36.35	0	2607998..2609953	-	651	24215325	prlC	LA2625	-	oligopeptidase A
2626	 32.08	0	2610773..2611411	+	212	24215326	-	LA2626	-	lipoprotein
2627	 37.91	0	2611637..2612815	+	392	24215327	-	LA2627	-	MaoC family protein
2628	 40.01	+1	2612956..2614872	-	638	24215328	-	LA2628	-	hypothetical protein
2629	 40.82	+1	2615122..2616150	+	342	24215329	-	LA2629	-	Zn-dependent alcohol dehydrogenase
2630	 36.67	0	2616152..2616271	-	39	24215330	-	LA2630	-	hypothetical protein
2631	 38.63	0	2616700..2617020	-	106	24215331	-	LA2631	-	hypothetical protein
2632	 41.43	+1	2617139..2618101	-	320	24215332	tktC2	LA2632	-	transketolase C-terminal section
2633	 40.31	+1	2618109..2619269	-	386	161484949	metK	LA2633	-	S-adenosylmethionine synthetase
2634	 34.34	0	2619440..2619838	+	132	24215334	-	LA2634	-	chromosome partitioning protein parB
2635	 23.15	-2	2619826..2619933	-	35	24215335	-	LA2636	-	hypothetical protein
2636	 22.88	-2	2619895..2620047	+	50	24215336	-	LA2635	-	hypothetical protein
2637	 43.35	+1	2620070..2620888	+	272	24215337	-	LA2637	-	LipL32 protein
2638	 28.92	-1	2621496..2621699	+	67	24215338	-	LA2638	-	hypothetical protein
2639	 37.19	0	2622335..2624095	+	586	24215339	-	LA2639	-	acyl-CoA dehydrogenase
2640	 29.35	-1	2624163..2624789	+	208	24215340	-	LA2640	-	hypothetical protein
2641	 34.32	0	2625561..2627801	+	746	24215341	-	LA2641	-	TonB-dependent receptor
2642	 32.31	0	2627885..2628079	+	64	24215342	-	LA2642	-	hypothetical protein
2643	 36.68	0	2628352..2629188	-	278	24215343	-	LA2644	-	HIV-1 Tat interactive protein-like protein
2644	 34.30	0	2629144..2630490	+	448	24215344	cyaA9	LA2643	-	adenylate cyclase
2645	 34.37	0	2630681..2631163	-	160	24215345	-	LA2645	-	hypothetical protein
2646	 26.36	-1	2631250..2631378	-	42	24215346	-	LA2646	-	hypothetical protein
2647	 34.97	0	2631399..2631581	-	60	24215347	-	LA2647	-	hypothetical protein
2648	 35.07	0	2631968..2632312	-	114	24215348	-	LA2648	-	hypothetical protein
2649	 33.72	0	2632602..2634152	-	516	24215349	-	LA2649	-	deoxyribodipyrimidine photolyase
2650	 17.02	-2	2634462..2634602	+	46	24215350	-	LA2650	-	hypothetical protein
2651	 39.00	0	2635172..2635471	+	99	24215351	-	LA2651	-	transposase
2652	 37.09	0	2635468..2636319	+	283	24215352	-	LA2652	-	integrase core subunit
2653	 26.67	-1	2636801..2636905	-	34	24215353	-	LA2653	-	hypothetical protein
2654	 43.64	+1	2638433..2638723	+	96	24215354	groES	LA2654	-	co-chaperonin GroES
2655	 42.41	+1	2638738..2640378	+	546	24215355	groEL	LA2655	-	chaperonin GroEL
2656	 34.67	0	2640482..2641153	+	223	24215356	-	LA2656	-	hypothetical protein
2657	 28.07	-1	2641128..2641241	-	37	24215357	-	LA2657	-	hypothetical protein
2658	 29.06	-1	2641409..2641525	-	38	24215358	-	LA2658	-	hypothetical protein
2659	 36.17	0	2642224..2643492	+	422	24215359	-	LA2659	-	hypothetical protein
2660	 41.47	+1	2643479..2644117	+	212	24215360	-	LA2660	-	sterol biosynthesis methyltransferase related protein-like protein
2661	 35.25	0	2644093..2644980	+	295	24215361	-	LA2661	-	3-demethylubiquinone-9 3-methyltransferase-like protein
2662	 34.71	0	2644984..2647233	+	749	24215362	-	LA2662	-	ribonuclease BN rbn
2663	 32.70	0	2647831..2648304	-	157	24215363	-	LA2663	-	hypothetical protein
2664	 38.06	0	2648301..2649401	-	366	24215364	flgI	LA2664	-	flagellar basal body P-ring protein
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.