IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2532	 34.16	0	2509850..2511301	-	483	24215232	-	LA2532	-	two-component hybrid sensor and regulator
2533	 30.35	0	2511324..2512361	-	345	24215233	-	LA2533	-	sensory transduction histidine kinase
2534	 28.57	-1	2513725..2513871	+	48	24215234	-	LA2534	-	hypothetical protein
2535	 37.47	0	2514161..2514619	-	152	24215235	ppiA	LA2535	-	peptidyl-prolyl cis-trans isomerase A
2536	 37.39	0	2514820..2517702	+	960	24215236	cyaA8	LA2536	-	adenylate cyclase
2537	 36.07	0	2517686..2519803	+	705	24215237	-	LA2537	-	hypothetical protein
2538	 35.73	0	2519793..2520917	+	374	24215238	-	LA2538	-	hypothetical protein
2539	 35.58	0	2521561..2523432	-	623	24215239	-	LA2539	-	ABC transporter, ATP-binding protein
2540	 35.51	0	2523475..2524944	-	489	24215240	-	LA2540	-	two-component hybrid sensor and regulator
2541	 34.86	0	2525427..2528234	+	935	24215241	-	LA2541	-	two-component hybrid sensor and regulator
2542	 35.22	0	2528310..2528786	-	158	24215242	-	LA2542	-	cyclic nucleotide binding protein
2543	 29.37	-1	2528936..2529061	+	41	24215243	-	LA2543	-	hypothetical protein
2544	 32.93	0	2529365..2530354	+	329	24215244	-	LA2544	-	alpha/beta fold family hydrolase/acetyltransferase
2545	 35.34	0	2530636..2531733	-	365	24215245	-	LA2545	-	hypothetical protein
2546	 33.77	0	2531730..2532191	-	153	24215246	capC	LA2546	-	capc protein
2547	 33.58	0	2532179..2533402	-	407	24215247	capB	LA2547	-	ligase
2548	 36.67	0	2533404..2534660	-	418	24215248	-	LA2548	-	two-component response regulator
2549	 35.47	0	2534721..2535842	-	373	24215249	-	LA2549	-	sensory transduction histidine kinase
2550	 40.26	+1	2535951..2536340	-	129	24215250	-	LA2550	-	FKBP-type peptidyl-prolyl cis-trans isomerase
2551	 39.14	0	2536337..2536732	-	131	24215251	-	LA2551	-	glycine-rich RNA binding protein
2552	 36.96	0	2536843..2537889	+	348	24215252	-	LA2552	-	serine/threonine protein kinase
2553	 35.71	0	2537878..2538045	-	55	24215253	-	LA2553	-	hypothetical protein
2554	 31.97	0	2538059..2538205	-	48	24215254	-	LA2555	-	hypothetical protein
2555	 37.53	0	2538204..2540465	+	753	24215255	-	LA2554	-	ABC transporter permease
2556	 34.97	0	2540949..2541437	+	162	24215256	-	LA2556	-	acetyltransferase
2557	 36.01	0	2541524..2542009	+	161	24215257	-	LA2557	-	hypothetical protein
2558	 39.03	0	2542021..2543283	-	420	24215258	clpX	LA2558	-	ATP-dependent protease ATP-binding subunit
2559	 38.53	0	2543294..2543890	-	198	24215259	clpP2	LA2559	-	protease subunit of ATP-dependent Clp protease
2560	 33.85	0	2543887..2545242	-	451	24215260	-	LA2560	-	trigger factor
2561	 33.81	0	2545411..2546043	-	210	24215261	-	LA2562	-	acyl-CoA thioesterase
2562	 35.22	0	2545988..2547847	+	619	24215262	nagZ	LA2561	-	Beta-hexosaminidase
2563	 34.28	0	2547844..2549010	+	388	24215263	-	LA2563	-	oxygen-independent coproporphyrinogen III oxidase
2564	 29.46	-1	2549095..2549223	+	42	24215264	-	LA2564	-	hypothetical protein
2565	 33.58	0	2549659..2550066	+	135	24215265	-	LA2565	-	hypothetical protein
2566	 33.33	0	2550089..2550193	-	34	24215266	-	LA2566	-	hypothetical protein
2567	 28.95	-1	2550235..2550348	-	37	24215267	-	LA2567	-	hypothetical protein
2568	 43.03	+1	2550749..2551078	-	109	24215268	-	LA2568	-	hypothetical protein
2569	 36.63	0	2551171..2551656	-	161	24215269	ilvH	LA2569	-	acetolactate synthase 3 regulatory subunit
2570	 39.85	0	2551653..2553431	-	592	24215270	ilvB2	LA2570	-	acetolactate synthase large subunit
2571	 26.19	-1	2553554..2553721	-	55	24215271	-	LA2571	-	hypothetical protein
2572	 34.68	0	2553792..2554901	+	369	24215272	-	LA2572	-	TPR repeat-containing protein
2573	 26.32	-1	2555149..2555262	-	37	24215273	-	LA2573	-	hypothetical protein
2574	 34.24	0	2555450..2557990	+	846	24215274	tlpA	LA2574	-	methyl-accepting chemotaxis protein tlpA
2575	 40.00	+1	2558071..2558340	+	89	24215275	-	LA2575	-	hypothetical protein
2576	 35.33	0	2558681..2560684	-	667	24215276	-	LA2576	-	hypothetical protein
2577	 38.07	0	2560820..2562148	+	442	24215277	-	LA2577	-	ABC1 family protein kinase
2578	 39.84	0	2562145..2562390	+	81	24215278	-	LA2578	-	hypothetical protein
2579	 37.61	0	2562377..2564482	+	701	24215279	feoB	LA2579	-	ferrous iron transport protein B-like protein
2580	 35.66	0	2564347..2566449	+	700	24215280	-	LA2580	-	phosphoglycerol transferase/alkaline phosphatase superfamily protein
2581	 36.94	0	2566465..2567463	+	332	24215281	NnaB3	LA2581	-	N-acetyl neuramic acid synthetase NeuB
2582	 36.48	0	2567456..2568598	+	380	24215282	-	LA2582	-	M23/M37 familypeptidase
2583	 29.27	-1	2568796..2568918	-	40	24215283	-	LA2583	-	hypothetical protein
2584	 37.48	0	2569043..2570104	-	353	24215284	-	LA2584	-	hypothetical protein
2585	 30.79	0	2570663..2570977	+	104	24215285	-	LA2585	-	hypothetical protein
2586	 24.04	-2	2571031..2571213	+	60	24215286	-	LA2586	-	hypothetical protein
2587	 32.68	0	2571523..2572443	+	306	24215287	-	LA2587	-	hypothetical protein
2588	 30.03	-1	2573583..2573945	-	120	24215288	-	LA2588	-	hypothetical protein
2589	 41.23	+1	2573952..2574875	-	307	24215289	fliH	LA2589	-	flagellar assembly protein H
2590	 38.07	0	2574879..2575850	-	323	24215290	fliG4	LA2590	-	flagellar motor switch protein fliG
2591	 39.10	0	2575847..2577544	-	565	24215291	fliF	LA2591	-	flagellar MS-ring protein
2592	 41.68	+1	2578811..2580175	+	454	24215292	fliI	LA2592	-	flagellum-specific ATP synthase fliI
2593	 34.39	0	2580179..2580745	+	188	24215293	-	LA2593	-	flagellar protein FliJ-like protein
2594	 38.27	0	2580904..2581551	+	215	24215294	flaB5	LA2594	-	flagellar protein B
2595	 33.84	0	2581564..2581956	+	130	24215295	-	LA2595	-	hypothetical protein
2596	 28.02	-1	2582004..2582756	+	250	24215296	-	LA2596	-	hypothetical protein
2597	 30.77	0	2583271..2583387	-	38	24215297	-	LA2597	-	hypothetical protein
2598	 33.33	0	2584247..2584534	-	95	24215298	-	LA2598	-	guanylate kinase
2599	 37.94	0	2584825..2585106	-	93	24215299	-	LA2599	-	hypothetical protein
2600	 35.36	0	2585106..2586188	-	360	24215300	-	LA2600	-	hypothetical protein
2601	 39.83	0	2586204..2586557	-	117	24215301	-	LA2601	-	hypothetical protein
2602	 41.29	+1	2586566..2588551	-	661	24215302	-	LA2602	-	hypothetical protein
2603	 37.58	0	2588577..2589377	-	266	24215303	fliA	LA2603	-	RNA polymerase sigma factor WhiG
2604	 39.83	0	2589505..2589981	-	158	24215304	-	LA2604	-	hypothetical protein
2605	 40.55	+1	2589985..2590899	-	304	24215305	-	LA2605	-	ParA protein
2606	 38.38	0	2590927..2592213	-	428	24215306	flhF	LA2606	-	flagellar biosynthesis regulator FlhF
2607	 40.75	+1	2592260..2594377	-	705	24215307	flhA	LA2607	-	flagellar biosynthesis protein FlhA
2608	 36.62	0	2594387..2596336	-	649	24215308	flhB	LA2608	-	flagellar biosynthesis protein FlhB
2609	 38.33	0	2596324..2597103	-	259	24215309	FliR	LA2609	-	flagellar biosynthetic protein fliR
2610	 33.33	0	2597110..2597373	-	87	24215310	FliQ	LA2610	-	flagellar biosynthetic protein FliQ
2611	 37.69	0	2597370..2598173	-	267	24215311	fliP	LA2611	-	flagellar biosynthesis protein FliP
2612	 38.81	0	2598206..2599027	-	273	24215312	-	LA2612	-	flagellar protein required for flagellar formation
2613	 43.57	+1	2599024..2600088	-	354	24215313	fliY	LA2613	-	flagellar motor switch protein fliY
2614	 28.30	-1	2600183..2600341	-	52	24215314	-	LA2614	-	hypothetical protein
2615	 38.84	0	2600656..2600982	-	108	24215315	-	LA2615	-	hypothetical protein
2616	 38.10	0	2601346..2603487	-	713	24215316	-	LA2616	-	phosphatidylserine decarboxylase proenzyme
2617	 34.87	0	2603456..2603650	-	64	24215317	-	LA2618	-	hypothetical protein
2618	 39.79	0	2603634..2604500	+	288	24215318	-	LA2617	-	hypothetical protein
2619	 24.40	-2	2604595..2604762	-	55	24215319	-	LA2619	-	hypothetical protein
2620	 33.75	0	2604849..2606045	-	398	24215320	-	LA2620	-	sterol desaturase-related protein
2621	 39.31	0	2606052..2606804	-	250	24215321	-	LA2621	-	3-oxoacyl-[acyl-carrier protein] reductase
2622	 34.81	0	2606779..2606913	-	44	24215322	-	LA2622	-	hypothetical protein
2623	 36.99	0	2607024..2607680	+	218	24215323	-	LA2623	-	glutathione transferase
2624	 36.99	0	2607745..2607990	+	81	24215324	-	LA2624	-	hypothetical protein
2625	 36.35	0	2607998..2609953	-	651	24215325	prlC	LA2625	-	oligopeptidase A
2626	 32.08	0	2610773..2611411	+	212	24215326	-	LA2626	-	lipoprotein
2627	 37.91	0	2611637..2612815	+	392	24215327	-	LA2627	-	MaoC family protein
2628	 40.01	+1	2612956..2614872	-	638	24215328	-	LA2628	-	hypothetical protein
2629	 40.82	+1	2615122..2616150	+	342	24215329	-	LA2629	-	Zn-dependent alcohol dehydrogenase
2630	 36.67	0	2616152..2616271	-	39	24215330	-	LA2630	-	hypothetical protein
2631	 38.63	0	2616700..2617020	-	106	24215331	-	LA2631	-	hypothetical protein
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.