IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2421	 35.38	0	2390567..2392762	+	731	24215121	-	LA2421	-	two-component hybrid sensor and regulator
2422	 31.15	0	2392707..2393987	+	426	24215122	-	LA2422	-	two-component response regulator
2423	 37.44	0	2393950..2394363	+	137	24215123	-	LA2423	-	two-component response regulator
2424	 31.73	0	2394360..2394734	+	124	24215124	-	LA2424	-	anti-sigma factor antagonist
2425	 34.97	0	2394738..2396879	+	713	24215125	cheA2	LA2425	-	chemotaxis protein CheA
2426	 38.11	0	2396924..2399854	+	976	24215126	-	LA2426	-	methyl-accepting chemotaxis protein
2427	 32.95	0	2399867..2400382	+	171	24215127	cheW3	LA2427	-	chemotaxis protein cheW
2428	 37.72	0	2400379..2400879	+	166	24215128	cheD1	LA2428	-	chemotaxis protein CheD
2429	 38.22	0	2400876..2401919	+	347	24215129	cheB3	LA2429	-	methylesterase CheB/methylase CheR
2430	 28.89	-1	2401934..2402068	-	44	24215130	-	LA2430	-	hypothetical protein
2431	 31.71	0	2402464..2402709	-	81	24215131	-	LA2431	-	hypothetical protein
2432	 38.69	0	2402749..2405493	-	914	24215132	accC1	LA2432	-	biotin carboxylase
2433	 42.09	+1	2405500..2407167	-	555	24215133	pccB1	LA2433	-	methylmalonyl-CoA decarboxylase
2434	 34.24	0	2407244..2407573	-	109	24215134	-	LA2434	-	anti-sigma factor antagonist
2435	 36.95	0	2407557..2410373	-	938	24215135	-	LA2435	-	sigma factor sigB regulation protein rsbU
2436	 40.04	+1	2410388..2410849	-	153	24215136	-	LA2436	-	hypothetical protein
2437	 31.86	0	2410986..2411666	+	226	24215137	-	LA2437	-	hypothetical protein
2438	 40.60	+1	2411669..2412205	+	178	24215138	-	LA2438	-	polypeptide deformylase
2439	 38.42	0	2412225..2415467	+	1080	24215139	-	LA2439	-	acriflavin resistance protein
2440	 32.32	0	2415619..2416701	-	360	24215140	-	LA2440	-	hypothetical protein
2441	 29.06	-1	2417321..2417437	-	38	24215141	-	LA2441	-	hypothetical protein
2442	 46.38	+2	2417456..2417593	-	45	24215142	-	LA2442	-	hypothetical protein
2443	 37.44	0	2420583..2422163	-	526	24215143	-	LA2443	-	outermembrane protein
2444	 36.78	0	2422251..2423237	-	328	24215144	-	LA2444	-	outermembrane protein
2445	 39.26	0	2423579..2423713	+	44	24215145	-	LA2445	-	hypothetical protein
2446	 29.06	-1	2423710..2423943	-	77	24215146	-	LA2446	-	leucine-rich repeat-containing protein
2447	 34.40	0	2424001..2425497	-	498	24215147	-	LA2447	-	outermembrane protein
2448	 33.10	0	2425568..2426854	-	428	24215148	-	LA2448	-	outermembrane protein
2449	 21.57	-2	2426885..2427037	+	50	24215149	-	LA2449	-	hypothetical protein
2450	 35.86	0	2427064..2428965	-	633	24215150	-	LA2450	-	outermembrane protein
2451	 22.88	-2	2428996..2429148	+	50	24215151	-	LA2451	-	hypothetical protein
2452	 33.56	0	2429175..2430044	-	289	24215152	-	LA2452	-	leucine-rich repeat-containing protein
2453	 35.68	0	2430374..2431312	-	312	24215153	-	LA2453	-	4Fe-4S binding protein
2454	 29.93	-1	2431327..2431767	+	146	24215154	-	LA2454	-	hypothetical protein
2455	 27.49	-1	2431833..2432003	-	56	24215155	-	LA2455	-	hypothetical protein
2456	 37.04	0	2432773..2433690	-	305	24215156	-	LA2456	-	hypothetical protein
2457	 40.97	+1	2433701..2434459	-	252	24215157	-	LA2457	-	methionine aminopeptidase
2458	 39.92	+1	2434466..2434708	-	80	24215158	-	LA2458	-	hypothetical protein
2459	 36.44	0	2434948..2438361	-	1137	24215159	-	LA2459	-	integrin-like protein
2460	 31.79	0	2438602..2439381	+	259	24215160	-	LA2460	-	ubiE/COQ5 methyltransferase family protein
2461	 33.67	0	2439462..2439758	+	98	24215161	-	LA2461	-	hypothetical protein
2462	 33.01	0	2439818..2440756	+	312	24215162	bcrA	LA2462	-	bacitracin transport ATP-binding protein bcrA
2463	 31.59	0	2440737..2441483	+	248	24215163	gldF	LA2463	-	gliding motility protein GldF
2464	 34.04	0	2441480..2443186	+	568	24215164	gldG	LA2464	-	gliding motility protein GldG
2465	 30.96	0	2443183..2444193	+	336	24215165	-	LA2465	-	hypothetical protein
2466	 34.40	0	2444624..2445376	+	250	24215166	-	LA2466	-	protein-S-isoprenylcysteine methyltransferase
2467	 33.73	0	2446071..2446820	-	249	24215167	-	LA2467	-	hypothetical protein
2468	 37.90	0	2446824..2448158	+	444	24215168	-	LA2468	-	hypothetical protein
2469	 38.06	0	2448158..2448622	+	154	24215169	CheX	LA2469	-	chemotaxis protein
2470	 29.17	-1	2449064..2449615	+	183	24215170	-	LA2470	-	hypothetical protein
2471	 34.44	0	2449877..2450872	-	331	24215171	-	LA2471	-	outermembrane protein
2472	 38.58	0	2450869..2451459	-	196	24215172	-	LA2472	-	hypothetical protein
2473	 34.48	0	2451622..2452317	+	231	24215173	-	LA2473	-	fumarate and nitrate reduction regulatory protein
2474	 31.82	0	2452579..2452710	-	43	24215174	-	LA2475	-	hypothetical protein
2475	 37.58	0	2452685..2454379	+	564	24215175	-	LA2474	-	hypothetical protein
2476	 27.49	-1	2454486..2454656	-	56	24215176	-	LA2476	-	hypothetical protein
2477	 32.51	0	2454742..2455107	-	121	24215177	-	LA2477	-	hypothetical protein
2478	 35.84	0	2455180..2455578	-	132	24215178	-	LA2478	-	hypothetical protein
2479	 33.33	0	2455575..2455916	-	113	24215179	-	LA2480	-	sensory transduction histidine kinase
2480	 34.23	0	2455898..2456008	+	36	24215180	-	LA2479	-	hypothetical protein
2481	 25.53	-1	2455976..2456116	-	46	24215181	-	LA2481	-	hypothetical protein
2482	 21.90	-2	2456259..2456363	-	34	24215182	-	LA2482	-	hypothetical protein
2483	 34.89	0	2456497..2457393	-	298	24215183	-	LA2483	-	integrase/recombinase xerD
2484	 31.39	0	2457491..2458366	+	291	24215184	-	LA2484	-	hypothetical protein
2485	 26.54	-1	2458339..2458500	+	53	24215185	-	LA2485	-	hypothetical protein
2486	 35.37	0	2458497..2459525	+	342	24215186	-	LA2486	-	hypothetical protein
2487	 35.09	0	2459605..2459718	+	37	24215187	-	LA2487	-	hypothetical protein
2488	 34.26	0	2460116..2460655	+	179	24215188	-	LA2488	-	hypothetical protein
2489	 34.86	0	2460702..2462138	-	478	24215189	-	LA2489	-	alginate O-acetylation protein
2490	 37.12	0	2462128..2463315	-	395	24215190	-	LA2490	-	hypothetical protein
2491	 39.47	0	2463388..2463501	-	37	24215191	-	LA2491	-	hypothetical protein
2492	 43.57	+1	2464128..2464547	+	139	24215192	-	LA2492	-	hypothetical protein
2493	 36.17	0	2464516..2465430	+	304	24215193	-	LA2493	-	transposase
2494	 41.75	+1	2466594..2467544	+	316	24215194	-	LA2494	-	thioredoxin reductase
2495	 32.43	0	2468173..2468283	-	36	24215195	-	LA2495	-	hypothetical protein
2496	 34.68	0	2469443..2470036	-	197	24215196	-	LA2496	-	outermembrane protein
2497	 34.97	0	2470087..2471556	-	489	24215197	-	LA2497	-	hypothetical protein
2498	 40.89	+1	2471713..2473233	+	506	24215198	-	LA2498	-	regulator of chromosome condensation RCC1 family protein
2499	 39.19	0	2473249..2474751	+	500	24215199	-	LA2499	-	hypothetical protein
2500	 25.00	-2	2476179..2476298	+	39	24215200	-	LA2500	-	hypothetical protein
2501	 34.00	0	2476396..2477289	+	297	24215201	-	LA2501	-	alpha/beta fold family hydrolase/acetyltransferase
2502	 26.50	-1	2477566..2477682	+	38	24215202	-	LA2502	-	hypothetical protein
2503	 31.03	0	2477691..2477864	-	57	24215203	-	LA2503	-	hypothetical protein
2504	 36.11	0	2478099..2478242	+	47	24215204	-	LA2504	-	hypothetical protein
2505	 35.50	0	2478606..2479715	+	369	24215205	-	LA2505	-	esterase
2506	 40.47	+1	2480341..2481111	-	256	24215206	hisF	LA2506	-	hisF protein
2507	 38.05	0	2481108..2482571	-	487	24215207	gatA	LA2507	-	glutamyl-tRNAGln amidotransferase subunit A
2508	 36.77	0	2482568..2482858	-	96	24215208	gatC	LA2508	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
2509	 35.65	0	2482885..2484306	-	473	24215209	rfbP2	LA2509	-	colanic biosynthesis UDP-glucose lipid carrier transferase
2510	 37.94	0	2484303..2487278	-	991	24215210	-	LA2510	-	hypothetical protein
2511	 33.93	0	2487302..2488135	-	277	24215211	-	LA2511	-	bacitracin resistance protein
2512	 34.44	0	2488142..2488867	-	241	24215212	-	LA2512	-	hypothetical protein
2513	 36.51	0	2488914..2492474	-	1186	24215213	-	LA2513	-	transcription-repair coupling factor
2514	 36.36	0	2492471..2493328	-	285	24215214	panC	LA2514	-	panthothenate synthetase
2515	 39.80	0	2493359..2494642	-	427	24215215	hisD	LA2515	-	histidinol dehydrogenase
2516	 39.43	0	2494703..2495506	+	267	24215216	exoA	LA2516	-	exodeoxyribonuclease
2517	 25.53	-1	2496336..2496476	-	46	24215217	-	LA2517	-	hypothetical protein
2518	 37.34	0	2497026..2498099	+	357	24215218	-	LA2518	-	transposase
2519	 34.13	0	2498414..2498917	-	167	24215219	-	LA2519	-	hypothetical protein
2520	 33.33	0	2499060..2499191	-	43	24215220	-	LA2520	-	hypothetical protein
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.