IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2393	 32.61	0	2362349..2362486	+	45	24215093	-	LA2392	-	hypothetical protein
2394	 36.11	0	2362909..2363556	-	215	24215094	-	LA2394	-	ribulose-phosphate 3-epimerase
2395	 34.84	0	2363553..2364548	-	331	24215095	-	LA2395	-	outermembrane protein
2396	 38.18	0	2364545..2365183	-	212	24215096	-	LA2396	-	methionyl-tRNA formyltransferase
2397	 36.04	0	2365460..2365570	+	36	24215097	-	LA2397	-	hypothetical protein
2398	 36.57	0	2365619..2367562	-	647	24215098	priA	LA2398	-	primosomal protein N'
2399	 37.44	0	2367559..2368410	-	283	24215099	-	LA2399	-	hypothetical protein
2400	 35.93	0	2368403..2369749	-	448	24215100	ntrX	LA2400	-	nitrogen assimilation regulatory protein Ntrx
2401	 34.12	0	2369757..2371547	-	596	24215101	-	LA2401	-	two-component hybrid sensor and regulator
2402	 39.39	0	2371561..2371824	-	87	24215102	ptsH	LA2402	-	phosphocarrier protein HPr
2403	 39.13	0	2371796..2372761	-	321	24215103	hprK	LA2403	-	HPr kinase/phosphorylase
2404	 35.86	0	2372766..2374187	-	473	24215104	rpoN	LA2404	-	transcription initiation factor sigma 54
2405	 39.12	0	2374184..2374909	-	241	24215105	-	LA2405	-	ABC transport system, ATPase component
2406	 35.08	0	2374922..2376292	-	456	24215106	-	LA2406	-	hypothetical protein
2407	 35.04	0	2376289..2376873	-	194	24215107	-	LA2407	-	hypothetical protein
2408	 37.59	0	2376885..2377754	-	289	24215108	kdsA	LA2408	-	2-dehydro-3-deoxyphosphooctonate aldolase
2409	 38.31	0	2377751..2379379	-	542	24215109	pyrG	LA2409	-	CTP synthetase
2410	 37.11	0	2379566..2380042	-	158	24215110	tagD	LA2410	-	glycerol-3-phosphate cytidylyltransferase
2411	 38.66	0	2380043..2381056	-	337	24215111	rfaE2	LA2411	-	ADP-heptose synthase
2412	 33.64	0	2381078..2381731	+	217	24215112	-	LA2412	-	ATP-dependent proteinase
2413	 39.47	0	2382023..2383294	-	423	24215113	nlpC	LA2413	-	lipoprotein NlpC
2414	 34.79	0	2383344..2384648	-	434	24215114	-	LA2414	-	peptide transporter
2415	 36.23	0	2384624..2385175	-	183	24215115	-	LA2415	-	hypothetical protein
2416	 29.52	-1	2385179..2385283	+	34	24215116	-	LA2416	-	hypothetical protein
2417	 41.84	+1	2385507..2386364	+	285	24215117	flaB3	LA2417	-	hook-associated protein, flagellin family
2418	 43.82	+1	2386943..2387791	-	282	24215118	flaB4	LA2418	-	hook-associated protein, flagellin family
2419	 39.74	0	2388333..2388863	+	176	24215119	-	LA2419	-	hypothetical protein
2420	 38.37	0	2388985..2389977	+	330	24215120	lytB	LA2420	-	penicillin tolerance protein
2421	 35.38	0	2390567..2392762	+	731	24215121	-	LA2421	-	two-component hybrid sensor and regulator
2422	 31.15	0	2392707..2393987	+	426	24215122	-	LA2422	-	two-component response regulator
2423	 37.44	0	2393950..2394363	+	137	24215123	-	LA2423	-	two-component response regulator
2424	 31.73	0	2394360..2394734	+	124	24215124	-	LA2424	-	anti-sigma factor antagonist
2425	 34.97	0	2394738..2396879	+	713	24215125	cheA2	LA2425	-	chemotaxis protein CheA
2426	 38.11	0	2396924..2399854	+	976	24215126	-	LA2426	-	methyl-accepting chemotaxis protein
2427	 32.95	0	2399867..2400382	+	171	24215127	cheW3	LA2427	-	chemotaxis protein cheW
2428	 37.72	0	2400379..2400879	+	166	24215128	cheD1	LA2428	-	chemotaxis protein CheD
2429	 38.22	0	2400876..2401919	+	347	24215129	cheB3	LA2429	-	methylesterase CheB/methylase CheR
2430	 28.89	-1	2401934..2402068	-	44	24215130	-	LA2430	-	hypothetical protein
2431	 31.71	0	2402464..2402709	-	81	24215131	-	LA2431	-	hypothetical protein
2432	 38.69	0	2402749..2405493	-	914	24215132	accC1	LA2432	-	biotin carboxylase
2433	 42.09	+1	2405500..2407167	-	555	24215133	pccB1	LA2433	-	methylmalonyl-CoA decarboxylase
2434	 34.24	0	2407244..2407573	-	109	24215134	-	LA2434	-	anti-sigma factor antagonist
2435	 36.95	0	2407557..2410373	-	938	24215135	-	LA2435	-	sigma factor sigB regulation protein rsbU
2436	 40.04	+1	2410388..2410849	-	153	24215136	-	LA2436	-	hypothetical protein
2437	 31.86	0	2410986..2411666	+	226	24215137	-	LA2437	-	hypothetical protein
2438	 40.60	+1	2411669..2412205	+	178	24215138	-	LA2438	-	polypeptide deformylase
2439	 38.42	0	2412225..2415467	+	1080	24215139	-	LA2439	-	acriflavin resistance protein
2440	 32.32	0	2415619..2416701	-	360	24215140	-	LA2440	-	hypothetical protein
2441	 29.06	-1	2417321..2417437	-	38	24215141	-	LA2441	-	hypothetical protein
2442	 46.38	+2	2417456..2417593	-	45	24215142	-	LA2442	-	hypothetical protein
2443	 37.44	0	2420583..2422163	-	526	24215143	-	LA2443	-	outermembrane protein
2444	 36.78	0	2422251..2423237	-	328	24215144	-	LA2444	-	outermembrane protein
2445	 39.26	0	2423579..2423713	+	44	24215145	-	LA2445	-	hypothetical protein
2446	 29.06	-1	2423710..2423943	-	77	24215146	-	LA2446	-	leucine-rich repeat-containing protein
2447	 34.40	0	2424001..2425497	-	498	24215147	-	LA2447	-	outermembrane protein
2448	 33.10	0	2425568..2426854	-	428	24215148	-	LA2448	-	outermembrane protein
2449	 21.57	-2	2426885..2427037	+	50	24215149	-	LA2449	-	hypothetical protein
2450	 35.86	0	2427064..2428965	-	633	24215150	-	LA2450	-	outermembrane protein
2451	 22.88	-2	2428996..2429148	+	50	24215151	-	LA2451	-	hypothetical protein
2452	 33.56	0	2429175..2430044	-	289	24215152	-	LA2452	-	leucine-rich repeat-containing protein
2453	 35.68	0	2430374..2431312	-	312	24215153	-	LA2453	-	4Fe-4S binding protein
2454	 29.93	-1	2431327..2431767	+	146	24215154	-	LA2454	-	hypothetical protein
2455	 27.49	-1	2431833..2432003	-	56	24215155	-	LA2455	-	hypothetical protein
2456	 37.04	0	2432773..2433690	-	305	24215156	-	LA2456	-	hypothetical protein
2457	 40.97	+1	2433701..2434459	-	252	24215157	-	LA2457	-	methionine aminopeptidase
2458	 39.92	+1	2434466..2434708	-	80	24215158	-	LA2458	-	hypothetical protein
2459	 36.44	0	2434948..2438361	-	1137	24215159	-	LA2459	-	integrin-like protein
2460	 31.79	0	2438602..2439381	+	259	24215160	-	LA2460	-	ubiE/COQ5 methyltransferase family protein
2461	 33.67	0	2439462..2439758	+	98	24215161	-	LA2461	-	hypothetical protein
2462	 33.01	0	2439818..2440756	+	312	24215162	bcrA	LA2462	-	bacitracin transport ATP-binding protein bcrA
2463	 31.59	0	2440737..2441483	+	248	24215163	gldF	LA2463	-	gliding motility protein GldF
2464	 34.04	0	2441480..2443186	+	568	24215164	gldG	LA2464	-	gliding motility protein GldG
2465	 30.96	0	2443183..2444193	+	336	24215165	-	LA2465	-	hypothetical protein
2466	 34.40	0	2444624..2445376	+	250	24215166	-	LA2466	-	protein-S-isoprenylcysteine methyltransferase
2467	 33.73	0	2446071..2446820	-	249	24215167	-	LA2467	-	hypothetical protein
2468	 37.90	0	2446824..2448158	+	444	24215168	-	LA2468	-	hypothetical protein
2469	 38.06	0	2448158..2448622	+	154	24215169	CheX	LA2469	-	chemotaxis protein
2470	 29.17	-1	2449064..2449615	+	183	24215170	-	LA2470	-	hypothetical protein
2471	 34.44	0	2449877..2450872	-	331	24215171	-	LA2471	-	outermembrane protein
2472	 38.58	0	2450869..2451459	-	196	24215172	-	LA2472	-	hypothetical protein
2473	 34.48	0	2451622..2452317	+	231	24215173	-	LA2473	-	fumarate and nitrate reduction regulatory protein
2474	 31.82	0	2452579..2452710	-	43	24215174	-	LA2475	-	hypothetical protein
2475	 37.58	0	2452685..2454379	+	564	24215175	-	LA2474	-	hypothetical protein
2476	 27.49	-1	2454486..2454656	-	56	24215176	-	LA2476	-	hypothetical protein
2477	 32.51	0	2454742..2455107	-	121	24215177	-	LA2477	-	hypothetical protein
2478	 35.84	0	2455180..2455578	-	132	24215178	-	LA2478	-	hypothetical protein
2479	 33.33	0	2455575..2455916	-	113	24215179	-	LA2480	-	sensory transduction histidine kinase
2480	 34.23	0	2455898..2456008	+	36	24215180	-	LA2479	-	hypothetical protein
2481	 25.53	-1	2455976..2456116	-	46	24215181	-	LA2481	-	hypothetical protein
2482	 21.90	-2	2456259..2456363	-	34	24215182	-	LA2482	-	hypothetical protein
2483	 34.89	0	2456497..2457393	-	298	24215183	-	LA2483	-	integrase/recombinase xerD
2484	 31.39	0	2457491..2458366	+	291	24215184	-	LA2484	-	hypothetical protein
2485	 26.54	-1	2458339..2458500	+	53	24215185	-	LA2485	-	hypothetical protein
2486	 35.37	0	2458497..2459525	+	342	24215186	-	LA2486	-	hypothetical protein
2487	 35.09	0	2459605..2459718	+	37	24215187	-	LA2487	-	hypothetical protein
2488	 34.26	0	2460116..2460655	+	179	24215188	-	LA2488	-	hypothetical protein
2489	 34.86	0	2460702..2462138	-	478	24215189	-	LA2489	-	alginate O-acetylation protein
2490	 37.12	0	2462128..2463315	-	395	24215190	-	LA2490	-	hypothetical protein
2491	 39.47	0	2463388..2463501	-	37	24215191	-	LA2491	-	hypothetical protein
2492	 43.57	+1	2464128..2464547	+	139	24215192	-	LA2492	-	hypothetical protein
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.