IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2310	 25.23	-2	2288186..2288296	+	36	24215010	-	LA2310	-	hypothetical protein
2311	 33.33	0	2288415..2288912	-	165	24215011	-	LA2312	-	thioredoxin
2312	 31.62	0	2288911..2289435	+	174	24215012	-	LA2311	-	hypothetical protein
2313	 21.95	-2	2290155..2290277	-	40	24215013	-	LA2313	-	hypothetical protein
2314	 34.19	0	2290292..2291455	-	387	24215014	-	LA2314	-	mannosyltransferase
2315	 37.12	0	2291560..2292405	-	281	24215015	cysQ	LA2315	-	inositol monophosphatase family protein
2316	 35.37	0	2292430..2292870	-	146	24215016	-	LA2316	-	outermembrane protein
2317	 36.56	0	2292933..2295131	-	732	24215017	pcrA4	LA2317	-	ATP-dependent DNA helicase pcrA
2318	 35.86	0	2295135..2298062	-	975	24215018	-	LA2318	-	outer membrane protein
2319	 36.22	0	2298081..2298530	-	149	24215019	tolR	LA2319	-	ExbD/TolR family protein
2320	 37.62	0	2298533..2299138	-	201	24215020	-	LA2320	-	biopolymer transport protein
2321	 39.19	0	2299250..2300956	-	568	24215021	recN	LA2321	-	DNA repair protein RecN
2322	 25.25	-2	2301315..2301512	-	65	24215022	-	LA2322	-	hypothetical protein
2323	 34.33	0	2301721..2302425	+	234	24215023	-	LA2323	-	hypothetical protein
2324	 38.00	0	2302415..2303185	+	256	24215024	fabG	LA2324	-	3-ketoacyl-(acyl-carrier-protein) reductase
2325	 39.33	0	2303362..2303661	+	99	24215025	-	LA2325	-	ArsR family transcriptional regulator
2326	 34.15	0	2303689..2304669	-	326	24215026	rfaD	LA2326	-	UDP-galactose 4-epimerase
2327	 38.34	0	2304675..2306432	-	585	24215027	-	LA2327	-	hypothetical protein
2328	 34.66	0	2306429..2307556	-	375	24215028	mutY	LA2328	-	A/G-specific DNA glycosylase
2329	 38.89	0	2307638..2308735	-	365	24215029	-	LA2329	-	translation-associated GTPase
2330	 30.29	0	2308781..2309995	-	404	24215030	-	LA2330	-	hypothetical protein
2331	 34.26	0	2310041..2310688	-	215	24215031	-	LA2331	-	hypothetical protein
2332	 34.81	0	2310751..2311695	+	314	24215032	ubiA	LA2332	-	prenyltransferase
2333	 36.04	0	2312232..2312342	+	36	24215033	-	LA2333	-	hypothetical protein
2334	 28.99	-1	2312368..2312505	+	45	24215034	-	LA2334	-	hypothetical protein
2335	 38.70	0	2313128..2313742	+	204	24215035	-	LA2335	-	aromatic acid decarboxylase
2336	 36.81	0	2313749..2314438	-	229	24215036	-	LA2336	-	hypothetical protein
2337	 38.31	0	2314485..2315528	-	347	24215037	-	LA2337	-	ATPase
2338	 32.65	0	2315530..2316408	-	292	24215038	-	LA2338	-	DNA repair exonuclease
2339	 39.46	0	2316405..2316665	-	86	24215039	-	LA2339	-	biotin/lipoyl attachment domain-containing protein
2340	 36.34	0	2316733..2317563	+	276	24215040	-	LA2340	-	hypothetical protein
2341	 22.86	-2	2317690..2317794	+	34	24215041	-	LA2341	-	hypothetical protein
2342	 34.10	0	2318065..2318583	+	172	24215042	-	LA2342	-	hypothetical protein
2343	 34.53	0	2318803..2320308	-	501	24215043	-	LA2343	-	hypothetical protein
2344	 33.96	0	2321297..2321455	-	52	24215044	-	LA2344	-	hypothetical protein
2345	 39.38	0	2321603..2323042	-	479	24215045	hslU	LA2345	-	ATP-dependent protease ATP-binding subunit
2346	 40.70	+1	2323052..2323594	-	180	24215046	-	LA2346	-	ATP-dependent protease peptidase subunit
2347	 34.17	0	2323581..2324537	-	318	24215047	xerC	LA2347	-	integrase/recombinase xerC
2348	 32.67	0	2324509..2324658	-	49	24215048	-	LA2348	-	hypothetical protein
2349	 35.43	0	2324736..2325308	-	190	24215049	-	LA2349	-	peptidyl-tRNA hydrolase
2350	 39.33	0	2325296..2326846	-	516	24215050	cimA	LA2350	-	alpha-isopropylmalate synthase
2351	 36.86	0	2326843..2327211	-	122	24215051	mutS2	LA2351	-	DNA mismatch repair protein MutS
2352	 37.95	0	2327301..2328860	+	519	24215052	-	LA2352	-	hypothetical protein
2353	 35.20	0	2329859..2330500	-	213	24215053	-	LA2354	-	dedA protein
2354	 30.93	0	2330474..2331097	+	207	24215054	-	LA2353	-	hypothetical protein
2355	 33.78	0	2331104..2332234	+	376	24215055	-	LA2355	-	hypothetical protein
2356	 38.22	0	2332238..2333506	+	422	24215056	xseA	LA2356	-	exodeoxyribonuclease VII large subunit
2357	 33.33	0	2333508..2333795	+	95	24215057	xseB	LA2357	-	exodeoxyribonuclease VII small subunit
2358	 32.16	0	2334112..2334282	+	56	24215058	-	LA2358	-	hypothetical protein
2359	 28.12	-1	2334272..2334367	-	31	24215059	-	LA2359	-	hypothetical protein
2360	 39.42	0	2334723..2338352	+	1209	24215060	nrdA	LA2360	-	ribonucleotide-diphosphate reductase subunit alpha
2361	 45.05	+2	2338522..2339067	-	181	24215061	-	LA2361	-	alcohol dehydrogenase
2362	 34.25	0	2339552..2339770	-	72	24215062	-	LA2362	-	hypothetical protein
2363	 28.46	-1	2340128..2340250	-	40	24215063	-	LA2364	-	outermembrane protein
2364	 29.37	-1	2340132..2340257	+	41	24215064	-	LA2363	-	hypothetical protein
2365	 36.52	0	2340309..2341250	-	313	24215065	-	LA2365	-	hypothetical protein
2366	 37.12	0	2341247..2341774	-	175	24215066	-	LA2366	-	hypothetical protein
2367	 34.57	0	2341782..2343404	-	540	24215067	ftsA2	LA2367	-	cell-division protein ftsA
2368	 36.89	0	2343410..2344786	-	458	24215068	-	LA2368	-	type II secretion pathway related protein etpK-like protein
2369	 38.60	0	2344749..2345393	-	214	24215069	-	LA2369	-	hypothetical protein
2370	 40.97	+1	2345403..2345939	-	178	24215070	-	LA2370	-	hypothetical protein
2371	 37.19	0	2345914..2346483	-	189	24215071	-	LA2371	-	outermembrane protein
2372	 40.88	+1	2346505..2346981	-	158	24215072	epsG	LA2372	-	general secretory pathway protein G
2373	 38.47	0	2347003..2348229	-	408	24215073	epsF	LA2373	-	general secretory pathway protein F
2374	 40.32	+1	2348235..2349908	-	557	24215074	epsE	LA2374	-	general secretion pathway protein E
2375	 37.34	0	2349912..2351759	-	615	24215075	epsD	LA2375	-	general secretory pathway protein D
2376	 39.71	0	2351707..2352615	-	302	24215076	epsC	LA2376	-	general secretion pathway protein C
2377	 38.08	0	2352671..2353681	-	336	24215077	-	LA2377	-	peptidase, M23/M37 family protein
2378	 35.20	0	2353650..2354024	-	124	24215078	-	LA2378	-	lipoprotein
2379	 37.44	0	2354228..2355712	+	494	24215079	-	LA2379	-	hypothetical protein
2380	 34.85	0	2355732..2355929	-	65	24215080	-	LA2380	-	hypothetical protein
2381	 32.48	0	2356025..2356375	-	116	24215081	-	LA2381	-	hypothetical protein
2382	 20.29	-2	2356901..2357038	+	45	24215082	-	LA2382	-	hypothetical protein
2383	 33.59	0	2357091..2358275	-	394	24215083	-	LA2383	-	HD-GYP domain-containing protein
2384	 38.64	0	2358272..2358535	-	87	24215084	flhB1	LA2384	-	flhB-related protein
2385	 34.68	0	2358536..2359279	-	247	24215085	-	LA2385	-	hypothetical protein
2386	 33.62	0	2359353..2359703	-	116	24215086	-	LA2386	-	ribonuclease HII
2387	 38.13	0	2360055..2360471	-	138	24215087	rplS	LA2387	-	50S ribosomal protein L19
2388	 40.52	+1	2360431..2361126	-	231	24215088	trmD	LA2388	-	tRNA (guanine-N1)-methyltransferase
2389	 36.72	0	2361116..2361646	-	176	24215089	rimM	LA2389	-	RimM protein, required for 16S rRNA processing
2390	 39.39	0	2361639..2361869	-	76	24215090	-	LA2390	-	RNA-binding protein
2391	 37.83	0	2361869..2362135	-	88	161484950	rpsP	LA2391	-	30S ribosomal protein S16
2392	 31.82	0	2362247..2362378	-	43	24215092	-	LA2393	-	hypothetical protein
2393	 32.61	0	2362349..2362486	+	45	24215093	-	LA2392	-	hypothetical protein
2394	 36.11	0	2362909..2363556	-	215	24215094	-	LA2394	-	ribulose-phosphate 3-epimerase
2395	 34.84	0	2363553..2364548	-	331	24215095	-	LA2395	-	outermembrane protein
2396	 38.18	0	2364545..2365183	-	212	24215096	-	LA2396	-	methionyl-tRNA formyltransferase
2397	 36.04	0	2365460..2365570	+	36	24215097	-	LA2397	-	hypothetical protein
2398	 36.57	0	2365619..2367562	-	647	24215098	priA	LA2398	-	primosomal protein N'
2399	 37.44	0	2367559..2368410	-	283	24215099	-	LA2399	-	hypothetical protein
2400	 35.93	0	2368403..2369749	-	448	24215100	ntrX	LA2400	-	nitrogen assimilation regulatory protein Ntrx
2401	 34.12	0	2369757..2371547	-	596	24215101	-	LA2401	-	two-component hybrid sensor and regulator
2402	 39.39	0	2371561..2371824	-	87	24215102	ptsH	LA2402	-	phosphocarrier protein HPr
2403	 39.13	0	2371796..2372761	-	321	24215103	hprK	LA2403	-	HPr kinase/phosphorylase
2404	 35.86	0	2372766..2374187	-	473	24215104	rpoN	LA2404	-	transcription initiation factor sigma 54
2405	 39.12	0	2374184..2374909	-	241	24215105	-	LA2405	-	ABC transport system, ATPase component
2406	 35.08	0	2374922..2376292	-	456	24215106	-	LA2406	-	hypothetical protein
2407	 35.04	0	2376289..2376873	-	194	24215107	-	LA2407	-	hypothetical protein
2408	 37.59	0	2376885..2377754	-	289	24215108	kdsA	LA2408	-	2-dehydro-3-deoxyphosphooctonate aldolase
2409	 38.31	0	2377751..2379379	-	542	24215109	pyrG	LA2409	-	CTP synthetase
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.