IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2116	 36.78	0	2086386..2086994	-	202	24214816	gloB	LA2116	-	hydroxyacylglutathione hydrolase
2117	 35.24	0	2087204..2087518	-	104	24214817	-	LA2117	-	anti-sigma B factor antagonist
2118	 39.29	0	2087712..2088668	+	318	24214818	-	LA2118	-	metallo-beta-lactamase superfamily protein
2119	 37.96	0	2088738..2090228	+	496	24214819	glpK1	LA2119	-	glycerol kinase
2120	 30.71	0	2090222..2091517	-	431	24214820	fliG3	LA2120	-	flagellar motor switch protein fliG
2121	 35.33	0	2091651..2091950	-	99	24214821	-	LA2121	-	hypothetical protein
2122	 33.13	0	2091947..2092927	-	326	24214822	-	LA2122	-	sigma-B regulator
2123	 32.55	0	2092924..2093565	-	213	24214823	-	LA2123	-	hypothetical protein
2124	 34.46	0	2093735..2095156	-	473	24214824	-	LA2124	-	alginate O-acetylation protein
2125	 35.76	0	2095192..2096178	-	328	24214825	sppA1	LA2126	-	signal peptide peptidase sppA
2126	 33.33	0	2096170..2096283	+	37	24214826	-	LA2125	-	hypothetical protein
2127	 34.00	0	2096320..2097225	+	301	24214827	-	LA2127	-	hypothetical protein
2128	 39.01	0	2097529..2097669	+	46	24214828	-	LA2128	-	hypothetical protein
2129	 38.30	0	2098231..2099940	+	569	24214829	-	LA2129	-	DNA repair helicase
2130	 40.41	+1	2099992..2101206	+	404	24214830	-	LA2130	-	aminotransferase
2131	 32.90	0	2101210..2102136	+	308	24214831	-	LA2131	-	outermembrane protein
2132	 32.85	0	2102124..2102957	+	277	24214832	-	LA2132	-	alpha/beta fold family hydrolase/acetyltransferase
2133	 34.26	0	2102914..2104536	-	540	24214833	-	LA2133	-	sodium:solute symporter family protein
2134	 33.96	0	2104677..2105639	+	320	24214834	thrB	LA2134	-	homoserine kinase
2135	 32.00	0	2105706..2105930	+	74	24214835	-	LA2135	-	hypothetical protein
2136	 35.20	0	2106116..2106757	-	213	24214836	-	LA2136	-	hypothetical protein
2137	 36.27	0	2106766..2107071	-	101	24214837	-	LA2137	-	hypothetical protein
2138	 36.10	0	2107330..2108376	+	348	24214838	-	LA2138	-	hypothetical protein
2139	 40.06	+1	2108403..2109383	+	326	24214839	mdh	LA2139	-	malate dehydrogenase
2140	 36.25	0	2109401..2110531	+	376	24214840	bioF	LA2140	-	8-amino-7-oxononanoate synthase
2141	 35.44	0	2110531..2111196	+	221	24214841	bioD	LA2141	-	dethiobiotin synthase
2142	 36.71	0	2111193..2112494	+	433	24214842	bioA	LA2142	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
2143	 35.95	0	2112484..2113590	+	368	24214843	bioB	LA2143	-	biotin synthase
2144	 35.07	0	2114204..2114893	+	229	24214844	pafAH	LA2144	-	platelet-activating factor acetylhydrolase
2145	 34.13	0	2114901..2115782	+	293	24214845	serB	LA2145	-	phosphoserine phosphatase
2146	 34.67	0	2115765..2118311	-	848	24214846	mutS1	LA2146	-	DNA mismatch repair protein
2147	 35.16	0	2118308..2118964	-	218	24214847	trpF	LA2147	-	phosphoribosyl anthranilate isomerase
2148	 38.41	0	2119050..2119325	+	91	24214848	-	LA2148	-	hypothetical protein
2149	 37.84	0	2119398..2119907	+	169	24214849	-	LA2149	-	hypothetical protein
2150	 34.98	0	2119904..2120449	+	181	24214850	-	LA2150	-	hypothetical protein
2151	 39.46	0	2120446..2120853	-	135	24214851	-	LA2151	-	two-component response regulator
2152	 41.41	+1	2120870..2121946	-	358	24214852	leuB	LA2152	-	3-isopropylmalate dehydrogenase
2153	 39.31	0	2121963..2123183	-	406	24214853	argD	LA2153	-	acetylornithine aminotransferase
2154	 36.34	0	2123180..2124943	-	587	24214854	manB	LA2154	-	phosphomannomutase
2155	 34.97	0	2125046..2125411	+	121	24214855	-	LA2155	-	hypothetical protein
2156	 35.41	0	2125411..2126517	+	368	24214856	-	LA2156	-	aminotransferase
2157	 33.33	0	2126644..2127078	-	144	24214857	-	LA2157	-	hypothetical protein
2158	 30.00	-1	2127353..2127832	+	159	24214858	-	LA2158	-	hypothetical protein
2159	 18.52	-2	2127963..2128070	+	35	24214859	-	LA2159	-	hypothetical protein
2160	 31.61	0	2128514..2129326	-	270	24214860	-	LA2160	-	hypothetical protein
2161	 34.85	0	2129475..2129606	-	43	24214861	-	LA2161	-	hypothetical protein
2162	 42.46	+1	2129703..2129987	+	94	24214862	rpmB	LA2162	-	50S ribosomal protein L28
2163	 36.41	0	2130277..2130633	+	118	24214863	-	LA2163	-	endonuclease III
2164	 34.52	0	2130640..2131062	+	140	24214864	-	LA2164	-	acyl-CoA thioester hydrolase
2165	 33.55	0	2131069..2131536	+	155	24214865	-	LA2165	-	peptide chain release factor
2166	 35.08	0	2132062..2133891	+	609	24214866	uvrC	LA2166	-	excinuclease ABC, subunit C
2167	 31.75	0	2133941..2136967	+	1008	24214867	-	LA2167	-	hypothetical protein
2168	 31.66	0	2137054..2138364	+	436	24214868	-	LA2168	-	hypothetical protein
2169	 28.81	-1	2138361..2138537	+	58	24214869	-	LA2169	-	lipoprotein
2170	 31.70	0	2138611..2140143	+	510	24214870	-	LA2170	-	phospholipase D family protein
2171	 31.78	0	2140283..2141443	-	386	24214871	-	LA2171	-	hypothetical protein
2172	 34.71	0	2141722..2143032	+	436	24214872	-	LA2172	-	glycosyl transferase
2173	 37.48	0	2143469..2144530	-	353	24214873	rfaF1	LA2173	-	ADP-heptose:LPS heptosyltransferase
2174	 34.57	0	2144527..2145174	-	215	24214874	-	LA2174	-	hypothetical protein
2175	 35.07	0	2145242..2147023	+	593	24214875	-	LA2175	-	hypothetical protein
2176	 30.25	0	2147006..2147653	-	215	24214876	-	LA2176	-	hypothetical protein
2177	 36.79	0	2147640..2149577	-	645	24214877	-	LA2177	-	long-chain-fatty-acid CoA ligase
2178	 34.61	0	2149583..2150599	-	338	24214878	argC	LA2178	-	N-acetyl-gamma-glutamyl-phosphate reductase
2179	 39.06	0	2150850..2151950	-	366	24214879	recA	LA2179	-	recombinase A
2180	 29.48	-1	2152172..2152975	-	267	24214880	-	LA2180	-	hypothetical protein
2181	 23.08	-2	2153705..2153821	-	38	24214881	-	LA2181	-	hypothetical protein
2182	 31.73	0	2154033..2154530	+	165	24214882	-	LA2182	-	hypothetical protein
2183	 31.75	0	2154568..2154945	+	125	24214883	-	LA2183	-	hypothetical protein
2184	 39.47	0	2154994..2156379	+	461	24214884	-	LA2184	-	tldD protein
2185	 38.48	0	2156292..2157710	+	472	24214885	-	LA2185	-	tldD protein
2186	 34.92	0	2157784..2163588	+	1934	24214886	-	LA2186	-	hypothetical protein
2187	 34.41	0	2163751..2165880	+	709	24214887	-	LA2187	-	penicillin-binding protein 1F
2188	 34.59	0	2165933..2166730	+	265	24214888	-	LA2188	-	ATPase of AAA class
2189	 35.19	0	2166732..2167919	+	395	24214889	-	LA2189	-	hypothetical protein
2190	 33.77	0	2168298..2169212	-	304	24214890	panE1	LA2190	-	2-dehydropantoate 2-reductase
2191	 31.82	0	2169214..2169411	-	65	24214891	-	LA2191	-	hypothetical protein
2192	 29.30	-1	2169461..2170228	-	255	24214892	-	LA2192	-	hypothetical protein
2193	 35.02	0	2170218..2172236	-	672	24214893	pcrA3	LA2193	-	ATP-dependent DNA helicase pcrA
2194	 38.30	0	2172217..2172699	-	160	24214894	-	LA2194	-	FKBP-type peptidyl-prolyl cis-trans isomerase
2195	 28.81	-1	2172771..2173124	-	117	24214895	-	LA2195	-	hypothetical protein
2196	 30.59	0	2173383..2175752	-	789	24214896	-	LA2196	-	hypothetical protein
2197	 38.66	0	2176665..2178674	-	669	24214897	fadH	LA2197	-	2,4-dienoyl-CoA reductase (NADPH)
2198	 28.57	-1	2178744..2178848	+	34	24214898	-	LA2198	-	hypothetical protein
2199	 26.36	-1	2178858..2178986	+	42	24214899	-	LA2199	-	hypothetical protein
2200	 36.01	0	2179442..2180002	+	186	24214900	amiB2	LA2200	-	N-acetylmuramoyl-L-alanine amidase
2201	 43.52	+1	2180112..2180219	-	35	24214901	-	LA2201	-	hypothetical protein
2202	 42.09	+1	2180396..2181982	-	528	24214902	leuA1	LA2202	-	2-isopropylmalate synthase
2203	 35.74	0	2182051..2182383	+	110	24214903	-	LA2203	-	hypothetical protein
2204	 27.07	-1	2182503..2183093	-	196	24214904	-	LA2204	-	hypothetical protein
2205	 31.57	0	2183574..2184140	-	188	24214905	-	LA2205	-	outermembrane protein
2206	 33.72	0	2184153..2184671	-	172	24214906	-	LA2206	-	hypothetical protein
2207	 37.19	0	2184830..2185606	-	258	24214907	-	LA2207	-	hypothetical protein
2208	 36.13	0	2185701..2187308	+	535	24214908	-	LA2208	-	hypothetical protein
2209	 34.70	0	2187289..2188236	+	315	24214909	-	LA2209	-	translation factor SUA5
2210	 26.80	-1	2189109..2189261	-	50	24214910	-	LA2210	-	hypothetical protein
2211	 32.36	0	2189875..2191614	-	579	24214911	sppA2	LA2211	-	signal peptide peptidase sppA
2212	 39.27	0	2191724..2194570	+	948	24214912	uvrA	LA2212	-	excinuclease ABC subunit A
2213	 33.64	0	2194662..2195636	+	324	24214913	-	LA2213	-	hypothetical protein
2214	 30.71	0	2195795..2196748	-	317	24214914	czcD1	LA2214	-	cobalt-zinc-cadmium resistance protein czcD
2215	 33.33	0	2196745..2197764	-	339	24214915	motB2	LA2215	-	chemotaxis motB protein
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.