IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2067	 37.76	0	2040370..2041656	-	428	24214767	-	LA2068	-	ATPase of the AAA+ class
2068	 39.46	0	2041640..2041786	+	48	24214768	-	LA2067	-	hypothetical protein
2069	 41.19	+1	2041972..2042289	+	105	24214769	fliN	LA2069	-	flagellar motor switch protein fliN
2070	 32.12	0	2042328..2042492	-	54	24214770	-	LA2070	-	hypothetical protein
2071	 36.66	0	2042764..2043696	-	310	24214771	-	LA2071	-	membrane protein
2072	 38.61	0	2043698..2044645	-	315	24214772	-	LA2072	-	membrane protein
2073	 38.33	0	2044677..2044856	-	59	24214773	-	LA2073	-	hypothetical protein
2074	 28.86	-1	2045075..2045275	-	66	24214774	-	LA2075	-	hypothetical protein
2075	 32.21	0	2045251..2045694	+	147	24214775	-	LA2074	-	hypothetical protein
2076	 36.23	0	2045721..2047133	+	470	24214776	argH	LA2076	-	argininosuccinate lyase
2077	 35.96	0	2047130..2048005	+	291	24214777	-	LA2077	-	peptidyl-prolyl cis-trans isomerase
2078	 36.86	0	2048002..2048625	+	207	24214778	-	LA2078	-	hypothetical protein
2079	 33.33	0	2049142..2049267	-	41	24214779	-	LA2079	-	hypothetical protein
2080	 35.06	0	2049308..2050174	+	288	24214780	-	LA2080	-	hypothetical protein
2081	 39.57	0	2050171..2051196	+	341	24214781	fliM	LA2081	-	flagellar motor switch protein FliM
2082	 34.92	0	2051507..2051632	+	41	24214782	-	LA2082	-	hypothetical protein
2083	 35.02	0	2051826..2052536	+	236	24214783	-	LA2083	-	hypothetical protein
2084	 31.96	0	2052915..2053205	-	96	24214784	-	LA2084	-	MtN3/saliva family protein
2085	 36.76	0	2053223..2053630	-	135	24214785	-	LA2085	-	7-cyano-7-deazaguanine reductase
2086	 35.51	0	2053636..2053773	+	45	24214786	-	LA2086	-	hypothetical protein
2087	 36.81	0	2053716..2055527	+	603	161484952	guaA	LA2087	-	bifunctional GMP synthase/glutamine amidotransferase protein
2088	 38.10	0	2056439..2057110	-	223	24214788	-	LA2088	-	hypothetical protein
2089	 29.64	-1	2057816..2060227	-	803	24214789	-	LA2089	-	hypothetical protein
2090	 34.02	0	2060336..2061208	+	290	24214790	-	LA2090	-	glycosyl transferase
2091	 33.46	0	2061195..2061971	+	258	24214791	-	LA2091	-	hypothetical protein
2092	 38.96	0	2061904..2062560	+	218	24214792	lpcA2	LA2092	-	phosphoheptose isomerase
2093	 37.14	0	2062571..2063332	+	253	24214793	oppD	LA2093	-	oligopeptide transport ATP-binding protein oppD
2094	 36.27	0	2063329..2064792	+	487	24214794	-	LA2094	-	FHA-domain-containing protein
2095	 42.78	+1	2064950..2066347	+	465	24214795	leuC	LA2095	-	isopropylmalate isomerase large subunit
2096	 39.13	0	2066367..2066987	+	206	24214796	leuD	LA2096	-	isopropylmalate isomerase small subunit
2097	 39.42	0	2067003..2068004	+	333	24214797	cysM	LA2097	-	cysteine synthase B
2098	 36.22	0	2068001..2069905	+	634	24214798	-	LA2098	-	helicase
2099	 32.41	0	2070387..2070494	+	35	24214799	-	LA2099	-	hypothetical protein
2100	 30.92	0	2070724..2071428	-	234	24214800	-	LA2100	-	hypothetical protein
2101	 38.92	0	2071513..2072067	+	184	24214801	-	LA2101	-	ECF subfamily RNA polymerase sigma factor
2102	 34.23	0	2072101..2073321	+	406	24214802	-	LA2102	-	hypothetical protein
2103	 39.58	0	2073318..2073653	+	111	24214803	-	LA2103	-	hypothetical protein
2104	 38.20	0	2073650..2075890	+	746	24214804	clpA	LA2104	-	ATPase with chaperone activity, ATP-binding subunit
2105	 38.12	0	2075904..2077637	+	577	24214805	-	LA2105	-	gamma-glutamyltranspeptidase
2106	 35.58	0	2077598..2079196	+	532	24214806	gshA	LA2106	-	gamma-glutamylcysteine synthetase
2107	 33.91	0	2079184..2080215	+	343	24214807	-	LA2107	-	hypothetical protein
2108	 37.04	0	2080212..2080454	-	80	24214808	-	LA2108	-	glutathione S-transferase
2109	 38.89	0	2080451..2080774	-	107	24214809	-	LA2109	-	hypothetical protein
2110	 32.54	0	2080771..2081022	-	83	24214810	-	LA2110	-	BolA protein
2111	 24.73	-2	2081174..2081359	+	61	24214811	-	LA2111	-	hypothetical protein
2112	 31.82	0	2082907..2083170	-	87	24214812	-	LA2112	-	BolA protein
2113	 33.98	0	2083174..2083947	-	257	24214813	-	LA2113	-	ABC transporter
2114	 36.60	0	2083944..2084861	-	305	24214814	-	LA2114	-	ABC transporter, ATP-binding protein
2115	 36.08	0	2084880..2086262	-	460	24214815	lpdA2	LA2115	-	dihydrolipoamide dehydrogenase
2116	 36.78	0	2086386..2086994	-	202	24214816	gloB	LA2116	-	hydroxyacylglutathione hydrolase
2117	 35.24	0	2087204..2087518	-	104	24214817	-	LA2117	-	anti-sigma B factor antagonist
2118	 39.29	0	2087712..2088668	+	318	24214818	-	LA2118	-	metallo-beta-lactamase superfamily protein
2119	 37.96	0	2088738..2090228	+	496	24214819	glpK1	LA2119	-	glycerol kinase
2120	 30.71	0	2090222..2091517	-	431	24214820	fliG3	LA2120	-	flagellar motor switch protein fliG
2121	 35.33	0	2091651..2091950	-	99	24214821	-	LA2121	-	hypothetical protein
2122	 33.13	0	2091947..2092927	-	326	24214822	-	LA2122	-	sigma-B regulator
2123	 32.55	0	2092924..2093565	-	213	24214823	-	LA2123	-	hypothetical protein
2124	 34.46	0	2093735..2095156	-	473	24214824	-	LA2124	-	alginate O-acetylation protein
2125	 35.76	0	2095192..2096178	-	328	24214825	sppA1	LA2126	-	signal peptide peptidase sppA
2126	 33.33	0	2096170..2096283	+	37	24214826	-	LA2125	-	hypothetical protein
2127	 34.00	0	2096320..2097225	+	301	24214827	-	LA2127	-	hypothetical protein
2128	 39.01	0	2097529..2097669	+	46	24214828	-	LA2128	-	hypothetical protein
2129	 38.30	0	2098231..2099940	+	569	24214829	-	LA2129	-	DNA repair helicase
2130	 40.41	+1	2099992..2101206	+	404	24214830	-	LA2130	-	aminotransferase
2131	 32.90	0	2101210..2102136	+	308	24214831	-	LA2131	-	outermembrane protein
2132	 32.85	0	2102124..2102957	+	277	24214832	-	LA2132	-	alpha/beta fold family hydrolase/acetyltransferase
2133	 34.26	0	2102914..2104536	-	540	24214833	-	LA2133	-	sodium:solute symporter family protein
2134	 33.96	0	2104677..2105639	+	320	24214834	thrB	LA2134	-	homoserine kinase
2135	 32.00	0	2105706..2105930	+	74	24214835	-	LA2135	-	hypothetical protein
2136	 35.20	0	2106116..2106757	-	213	24214836	-	LA2136	-	hypothetical protein
2137	 36.27	0	2106766..2107071	-	101	24214837	-	LA2137	-	hypothetical protein
2138	 36.10	0	2107330..2108376	+	348	24214838	-	LA2138	-	hypothetical protein
2139	 40.06	+1	2108403..2109383	+	326	24214839	mdh	LA2139	-	malate dehydrogenase
2140	 36.25	0	2109401..2110531	+	376	24214840	bioF	LA2140	-	8-amino-7-oxononanoate synthase
2141	 35.44	0	2110531..2111196	+	221	24214841	bioD	LA2141	-	dethiobiotin synthase
2142	 36.71	0	2111193..2112494	+	433	24214842	bioA	LA2142	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
2143	 35.95	0	2112484..2113590	+	368	24214843	bioB	LA2143	-	biotin synthase
2144	 35.07	0	2114204..2114893	+	229	24214844	pafAH	LA2144	-	platelet-activating factor acetylhydrolase
2145	 34.13	0	2114901..2115782	+	293	24214845	serB	LA2145	-	phosphoserine phosphatase
2146	 34.67	0	2115765..2118311	-	848	24214846	mutS1	LA2146	-	DNA mismatch repair protein
2147	 35.16	0	2118308..2118964	-	218	24214847	trpF	LA2147	-	phosphoribosyl anthranilate isomerase
2148	 38.41	0	2119050..2119325	+	91	24214848	-	LA2148	-	hypothetical protein
2149	 37.84	0	2119398..2119907	+	169	24214849	-	LA2149	-	hypothetical protein
2150	 34.98	0	2119904..2120449	+	181	24214850	-	LA2150	-	hypothetical protein
2151	 39.46	0	2120446..2120853	-	135	24214851	-	LA2151	-	two-component response regulator
2152	 41.41	+1	2120870..2121946	-	358	24214852	leuB	LA2152	-	3-isopropylmalate dehydrogenase
2153	 39.31	0	2121963..2123183	-	406	24214853	argD	LA2153	-	acetylornithine aminotransferase
2154	 36.34	0	2123180..2124943	-	587	24214854	manB	LA2154	-	phosphomannomutase
2155	 34.97	0	2125046..2125411	+	121	24214855	-	LA2155	-	hypothetical protein
2156	 35.41	0	2125411..2126517	+	368	24214856	-	LA2156	-	aminotransferase
2157	 33.33	0	2126644..2127078	-	144	24214857	-	LA2157	-	hypothetical protein
2158	 30.00	-1	2127353..2127832	+	159	24214858	-	LA2158	-	hypothetical protein
2159	 18.52	-2	2127963..2128070	+	35	24214859	-	LA2159	-	hypothetical protein
2160	 31.61	0	2128514..2129326	-	270	24214860	-	LA2160	-	hypothetical protein
2161	 34.85	0	2129475..2129606	-	43	24214861	-	LA2161	-	hypothetical protein
2162	 42.46	+1	2129703..2129987	+	94	24214862	rpmB	LA2162	-	50S ribosomal protein L28
2163	 36.41	0	2130277..2130633	+	118	24214863	-	LA2163	-	endonuclease III
2164	 34.52	0	2130640..2131062	+	140	24214864	-	LA2164	-	acyl-CoA thioester hydrolase
2165	 33.55	0	2131069..2131536	+	155	24214865	-	LA2165	-	peptide chain release factor
2166	 35.08	0	2132062..2133891	+	609	24214866	uvrC	LA2166	-	excinuclease ABC, subunit C
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.