IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.02   STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1929	 37.08	0	1898684..1900843	+	719	24214629	cgs1	LA1929	-	cAMP-dependent protein kinase regulatory chain
1930	 40.05	+1	1900861..1901991	+	376	24214630	-	LA1930	-	Acyl-CoA dehydrogenase
1931	 41.22	+1	1902031..1903209	+	392	24214631	-	LA1931	-	outermembrane protein
1932	 34.31	0	1903315..1903926	+	203	24214632	-	LA1932	-	hypothetical protein
1933	 35.58	0	1904646..1905983	-	445	24214633	tetA2	LA1933	-	tetracycline resistance protein
1934	 37.81	0	1906026..1906427	-	133	24214634	-	LA1934	-	hypothetical protein
1935	 38.22	0	1906471..1907043	-	190	24214635	-	LA1935	-	hypothetical protein
1936	 38.03	0	1907103..1908974	-	623	24214636	-	LA1936	-	alpha/beta fold family hydrolase/acetyltransferase
1937	 39.96	+1	1910320..1910877	-	185	24214637	-	LA1937	-	CopG family transcriptional regulator
1938	 29.71	-1	1911293..1911430	+	45	24214638	-	LA1938	-	hypothetical protein
1939	 33.75	0	1911998..1912477	-	159	24214639	-	LA1939	-	outermembrane protein
1940	 30.13	-1	1912580..1912735	+	51	24214640	-	LA1940	-	hypothetical protein
1941	 33.08	0	1913206..1913607	-	133	24214641	-	LA1941	-	hypothetical protein
1942	 32.17	0	1913929..1914273	-	114	24214642	-	LA1942	-	hypothetical protein
1943	 36.75	0	1914587..1914703	-	38	24214643	-	LA1943	-	hypothetical protein
1944	 34.34	0	1914832..1915029	-	65	24214644	-	LA1944	-	lipoprotein
1945	 32.33	0	1915443..1916042	-	199	24214645	-	LA1945	-	hypothetical protein
1946	 32.94	0	1915993..1916502	-	169	24214646	-	LA1946	-	outermembrane protein
1947	 37.88	0	1916507..1917715	-	402	24214647	-	LA1947	-	outermembrane protein
1948	 39.67	0	1917732..1918220	-	162	24214648	-	LA1948	-	two-component response regulator
1949	 34.77	0	1918291..1919403	-	370	24214649	-	LA1949	-	hypothetical protein
1950	 38.68	0	1919667..1920227	-	186	24214650	-	LA1950	-	hypothetical protein
1951	 40.34	+1	1920897..1922195	+	432	24214651	eno	LA1951	-	enolase
1952	 26.67	-1	1922282..1922476	+	64	24214652	-	LA1952	-	hypothetical protein
1953	 40.07	+1	1922969..1923562	+	197	161484953	clpP1	LA1953	-	ATP-dependent Clp protease, proteolytic subunit
1954	 31.93	0	1923576..1923932	+	118	24214654	-	LA1954	-	hypothetical protein
1955	 37.49	0	1923956..1924966	+	336	24214655	-	LA1955	-	alpha/beta fold family hydrolase/acetyltransferase
1956	 34.41	0	1924977..1925534	+	185	24214656	-	LA1956	-	hypothetical protein
1957	 32.64	0	1925509..1926084	+	191	24214657	-	LA1957	-	lipoprotein
1958	 36.31	0	1926248..1926919	+	223	24214658	-	LA1958	-	outermembrane protein
1959	 37.87	0	1926916..1927665	+	249	24214659	-	LA1959	-	glutamine amidotransferase
1960	 38.42	0	1927770..1930502	+	910	24214660	secA	LA1960	-	preprotein translocase subunit SecA
1961	 34.93	0	1930526..1930963	+	145	24214661	-	LA1961	-	hypothetical protein
1962	 38.89	0	1931064..1931441	+	125	24214662	-	LA1962	-	hypothetical protein
1963	 37.80	0	1931541..1932995	+	484	24214663	-	LA1963	-	outer membrane protein precursor CzcC
1964	 42.51	+1	1933568..1934014	+	148	24214664	-	LA1964	-	cation efflux system membrane protein
1965	 38.42	0	1934004..1934750	+	248	24214665	-	LA1965	-	outermembrane protein
1966	 40.90	+1	1934756..1938085	+	1109	24214666	czcA2	LA1966	-	cation efflux system protein
1967	 39.72	0	1938620..1941940	+	1106	24214667	czcA3	LA1967	-	cation efflux system protein
1968	 40.16	+1	1942469..1944124	-	551	24214668	-	LA1968	-	outermembrane protein
1969	 26.85	-1	1944290..1944397	-	35	24214669	-	LA1969	-	hypothetical protein
1970	 34.26	0	1945541..1946839	-	432	24214670	papS	LA1970	-	Poly(A) polymerase
1971	 31.09	0	1946832..1947233	-	133	24214671	-	LA1971	-	hypothetical protein
1972	 40.00	+1	1947579..1947968	-	129	24214672	rnhA	LA1972	-	ribonuclease H-like protein
1973	 30.82	0	1947965..1948282	-	105	24214673	-	LA1973	-	hypothetical protein
1974	 33.98	0	1948666..1949439	+	257	24214674	-	LA1974	-	arginyl-tRNA-protein transferase
1975	 32.41	0	1949409..1949516	-	35	24214675	-	LA1976	-	hypothetical protein
1976	 38.46	0	1949500..1950240	+	246	24214676	-	LA1975	-	3-oxoacyl-(acyl carrier protein) reductase
1977	 36.13	0	1950259..1951761	+	500	24214677	-	LA1977	-	oxidoreductase, FAD-binding
1978	 32.19	0	1951762..1953243	+	493	24214678	-	LA1978	-	hypothetical protein
1979	 35.10	0	1953262..1954395	+	377	24214679	-	LA1979	-	glycosyl transferase
1980	 31.56	0	1954740..1955414	+	224	24214680	-	LA1980	-	hypothetical protein
1981	 30.68	0	1956255..1957877	-	540	24214681	-	LA1981	-	hypothetical protein
1982	 32.43	0	1957881..1959866	-	661	24214682	-	LA1982	-	hypothetical protein
1983	 31.52	0	1959977..1961794	-	605	24214683	-	LA1984	-	hypothetical protein
1984	 34.51	0	1961776..1963050	+	424	24214684	-	LA1983	-	hypothetical protein
1985	 35.31	0	1964315..1965427	-	370	24214685	-	LA1985	-	hypothetical protein
1986	 40.28	+1	1965498..1967024	+	508	24214686	-	LA1986	-	inosine-5'-monophosphate dehydrogenase
1987	 33.59	0	1967025..1967807	+	260	24214687	-	LA1987	-	outermembrane protein
1988	 35.79	0	1967816..1968508	+	230	24214688	-	LA1988	-	hypothetical protein
1989	 36.49	0	1968498..1968782	-	94	24214689	-	LA1989	-	outermembrane protein
1990	 28.99	-1	1969210..1969347	+	45	24214690	-	LA1990	-	hypothetical protein
1991	 35.04	0	1969358..1970002	+	214	24214691	thiE	LA1991	-	thiamine-phosphate pyrophosphorylase
1992	 36.71	0	1970057..1970884	+	275	24214692	tagA	LA1992	-	UDP-N-acetyl-D-mannosamine transferase
1993	 30.61	0	1971073..1971219	+	48	24214693	-	LA1993	-	hypothetical protein
1994	 29.76	-1	1971602..1971769	+	55	24214694	-	LA1994	-	hypothetical protein
1995	 38.44	0	1971908..1973395	-	495	24214695	lysS1	LA1995	-	lysyl-tRNA synthetase
1996	 35.02	0	1973404..1974054	-	216	24214696	-	LA1996	-	hypothetical protein
1997	 35.08	0	1974104..1976284	-	726	24214697	-	LA1997	-	cellulose synthase catalytic subunit-like protein
1998	 35.99	0	1976495..1977397	-	300	24214698	-	LA1998	-	polysaccharide deacetylase
1999	 33.12	0	1977418..1977888	-	156	24214699	-	LA1999	-	hypothetical protein
2000	 35.21	0	1977873..1978139	-	88	24214700	-	LA2000	-	hypothetical protein
2001	 33.93	0	1978761..1979435	-	224	24214701	pgsA2	LA2001	-	phosphatidylglycerophosphate synthase
2002	 26.19	-1	1980535..1980660	+	41	24214702	-	LA2002	-	hypothetical protein
2003	 39.44	0	1981077..1982321	+	414	24214703	-	LA2003	-	hypothetical protein
2004	 44.02	+1	1982318..1983178	+	286	24214704	-	LA2004	-	outermembrane protein
2005	 32.38	0	1983494..1983598	+	34	24214705	-	LA2005	-	hypothetical protein
2006	 27.19	-1	1983821..1984048	-	75	24214706	-	LA2006	-	hypothetical protein
2007	 36.57	0	1984321..1985340	-	339	24214707	fliG2	LA2007	-	flagellar motor switch protein
2008	 42.48	+1	1985346..1986722	-	458	24214708	pdhC	LA2008	-	dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex E2
2009	 43.08	+1	1986744..1987718	-	324	24214709	aceE1	LA2009	-	pyruvate dehydrogenase subunit beta
2010	 42.48	+1	1987718..1988701	-	327	24214710	aceE2	LA2010	-	pyruvate dehydrogenase E1 component, alpha subunit
2011	 36.79	0	1988799..1989521	+	240	24214711	-	LA2011	-	two-component response regulator
2012	 34.16	0	1989619..1990944	+	441	24214712	-	LA2012	-	sensory histidine kinase CreC
2013	 31.94	0	1991214..1991429	+	71	24214713	-	LA2013	-	hypothetical protein
2014	 33.33	0	1991417..1992793	+	458	24214714	creD	LA2014	-	hypothetical protein
2015	 45.12	+2	1992972..1993217	+	81	24214715	-	LA2015	-	hypothetical protein
2016	 42.67	+1	1993425..1993799	+	124	24214716	-	LA2016	-	hypothetical protein
2017	 45.15	+2	1994587..1995432	+	281	24214717	flaB1	LA2017	-	periplasmic flagellin
2018	 34.72	0	1995534..1995677	+	47	24214718	-	LA2018	-	hypothetical protein
2019	 47.42	+2	1995890..1996741	+	283	24214719	flaB2	LA2019	-	periplasmic flagellin
2020	 33.78	0	1997756..1999093	+	445	24214720	-	LA2020	-	hypothetical protein
2021	 25.93	-1	1999128..1999235	-	35	24214721	-	LA2021	-	hypothetical protein
2022	 29.47	-1	1999232..1999723	-	163	24214722	-	LA2022	-	hypothetical protein
2023	 37.39	0	1999809..2000375	-	188	24214723	-	LA2023	-	cytochrome c
2024	 39.63	0	2001025..2002263	-	412	24214724	-	LA2024	-	hypothetical protein
2025	 36.49	0	2002293..2003591	+	432	24214725	-	LA2025	-	hypothetical protein
2026	 35.10	0	2003545..2004222	+	225	24214726	-	LA2026	-	hypothetical protein
2027	 36.74	0	2004219..2005070	+	283	24214727	-	LA2027	-	hypothetical protein
2028	 36.81	0	2005394..2006140	+	248	24214728	-	LA2028	-	membrane protease subunit, stomatin/prohibitin-like protein
35.02	MEAN

4.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.