IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.02   STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1890	 32.37	0	1865535..1866260	+	241	24214590	-	LA1890	-	hypothetical protein
1891	 34.04	0	1866484..1866624	-	46	24214591	-	LA1891	-	hypothetical protein
1892	 31.14	0	1866958..1867686	-	242	24214592	-	LA1892	-	hypothetical protein
1893	 26.83	-1	1867676..1867798	-	40	24214593	-	LA1893	-	hypothetical protein
1894	 35.33	0	1867854..1868303	+	149	24214594	-	LA1894	-	hypothetical protein
1895	 34.63	0	1868278..1868508	+	76	24214595	-	LA1895	-	hypothetical protein
1896	 46.58	+2	1868706..1869437	-	243	24214596	sdhB	LA1896	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
1897	 43.57	+1	1869437..1871350	-	637	24214597	sdhA	LA1897	-	succinate dehydrogenase flavoprotein subunit
1898	 41.70	+1	1871369..1872049	-	226	24214598	-	LA1898	-	cytochrome B subunit
1899	 33.60	0	1872322..1873848	+	508	24214599	-	LA1899	-	aldo/keto reductase family protein
1900	 35.91	0	1873838..1874302	+	154	24214600	-	LA1900	-	hypothetical protein
1901	 22.86	-2	1874278..1874382	+	34	24214601	-	LA1901	-	hypothetical protein
1902	 33.81	0	1874545..1874964	+	139	24214602	-	LA1902	-	hypothetical protein
1903	 33.33	0	1875036..1875419	+	127	24214603	-	LA1903	-	hypothetical protein
1904	 35.22	0	1875748..1876596	+	282	24214604	-	LA1904	-	hypothetical protein
1905	 36.02	0	1876606..1877943	+	445	24214605	-	LA1905	-	outermembrane protein
1906	 39.35	0	1878028..1878243	+	71	24214606	-	LA1906	-	hypothetical protein
1907	 27.00	-1	1878327..1878563	-	78	24214607	-	LA1907	-	hypothetical protein
1908	 35.35	0	1878626..1879072	-	148	24214608	-	LA1908	-	hypothetical protein
1909	 28.21	-1	1879491..1879607	-	38	24214609	-	LA1909	-	hypothetical protein
1910	 37.91	0	1879914..1880219	-	101	24214610	-	LA1910	-	hypothetical protein
1911	 37.62	0	1880379..1881614	-	411	24214611	serA	LA1911	-	D-3-phosphoglycerate dehydrogenase
1912	 32.96	0	1881819..1882355	+	178	24214612	-	LA1912	-	outermembrane protein
1913	 31.48	0	1882464..1882679	-	71	24214613	-	LA1913	-	hypothetical protein
1914	 23.48	-2	1882709..1882840	-	43	24214614	-	LA1914	-	hypothetical protein
1915	 40.42	+1	1882896..1886495	-	1199	24214615	-	LA1915	-	TPR repeat-containing protein
1916	 35.75	0	1886649..1887557	+	302	24214616	-	LA1916	-	isoamylase family protein
1917	 35.64	0	1887604..1888341	+	245	24214617	-	LA1917	-	hypothetical protein
1918	 33.33	0	1888546..1888815	+	89	24214618	-	LA1918	-	hypothetical protein
1919	 30.64	0	1888989..1890584	-	531	24214619	-	LA1919	-	regulatory protein
1920	 42.75	+1	1892061..1892336	+	91	24214620	rbpA2	LA1920	-	RNA-binding protein
1921	 37.70	0	1892652..1892834	+	60	24214621	-	LA1921	-	hypothetical protein
1922	 28.68	-1	1893062..1893190	-	42	24214622	-	LA1923	-	hypothetical protein
1923	 35.50	0	1893183..1893920	+	245	24214623	-	LA1922	-	MORN repeat-containing protein
1924	 34.61	0	1894933..1896027	-	364	24214624	-	LA1924	-	hypothetical protein
1925	 35.46	0	1896029..1896829	-	266	24214625	tatC	LA1925	-	Sec-independent protein translocase protein tatC
1926	 39.56	0	1896826..1897098	-	90	24214626	-	LA1926	-	mttA/Hcf106 family protein
1927	 34.20	0	1897487..1898296	+	269	24214627	-	LA1927	-	hypothetical protein
1928	 38.06	0	1898302..1898661	+	119	24214628	trxA	LA1928	-	thioredoxin (TRX)
1929	 37.08	0	1898684..1900843	+	719	24214629	cgs1	LA1929	-	cAMP-dependent protein kinase regulatory chain
1930	 40.05	+1	1900861..1901991	+	376	24214630	-	LA1930	-	Acyl-CoA dehydrogenase
1931	 41.22	+1	1902031..1903209	+	392	24214631	-	LA1931	-	outermembrane protein
1932	 34.31	0	1903315..1903926	+	203	24214632	-	LA1932	-	hypothetical protein
1933	 35.58	0	1904646..1905983	-	445	24214633	tetA2	LA1933	-	tetracycline resistance protein
1934	 37.81	0	1906026..1906427	-	133	24214634	-	LA1934	-	hypothetical protein
1935	 38.22	0	1906471..1907043	-	190	24214635	-	LA1935	-	hypothetical protein
1936	 38.03	0	1907103..1908974	-	623	24214636	-	LA1936	-	alpha/beta fold family hydrolase/acetyltransferase
1937	 39.96	+1	1910320..1910877	-	185	24214637	-	LA1937	-	CopG family transcriptional regulator
1938	 29.71	-1	1911293..1911430	+	45	24214638	-	LA1938	-	hypothetical protein
1939	 33.75	0	1911998..1912477	-	159	24214639	-	LA1939	-	outermembrane protein
1940	 30.13	-1	1912580..1912735	+	51	24214640	-	LA1940	-	hypothetical protein
1941	 33.08	0	1913206..1913607	-	133	24214641	-	LA1941	-	hypothetical protein
1942	 32.17	0	1913929..1914273	-	114	24214642	-	LA1942	-	hypothetical protein
1943	 36.75	0	1914587..1914703	-	38	24214643	-	LA1943	-	hypothetical protein
1944	 34.34	0	1914832..1915029	-	65	24214644	-	LA1944	-	lipoprotein
1945	 32.33	0	1915443..1916042	-	199	24214645	-	LA1945	-	hypothetical protein
1946	 32.94	0	1915993..1916502	-	169	24214646	-	LA1946	-	outermembrane protein
1947	 37.88	0	1916507..1917715	-	402	24214647	-	LA1947	-	outermembrane protein
1948	 39.67	0	1917732..1918220	-	162	24214648	-	LA1948	-	two-component response regulator
1949	 34.77	0	1918291..1919403	-	370	24214649	-	LA1949	-	hypothetical protein
1950	 38.68	0	1919667..1920227	-	186	24214650	-	LA1950	-	hypothetical protein
1951	 40.34	+1	1920897..1922195	+	432	24214651	eno	LA1951	-	enolase
1952	 26.67	-1	1922282..1922476	+	64	24214652	-	LA1952	-	hypothetical protein
1953	 40.07	+1	1922969..1923562	+	197	161484953	clpP1	LA1953	-	ATP-dependent Clp protease, proteolytic subunit
1954	 31.93	0	1923576..1923932	+	118	24214654	-	LA1954	-	hypothetical protein
1955	 37.49	0	1923956..1924966	+	336	24214655	-	LA1955	-	alpha/beta fold family hydrolase/acetyltransferase
1956	 34.41	0	1924977..1925534	+	185	24214656	-	LA1956	-	hypothetical protein
1957	 32.64	0	1925509..1926084	+	191	24214657	-	LA1957	-	lipoprotein
1958	 36.31	0	1926248..1926919	+	223	24214658	-	LA1958	-	outermembrane protein
1959	 37.87	0	1926916..1927665	+	249	24214659	-	LA1959	-	glutamine amidotransferase
1960	 38.42	0	1927770..1930502	+	910	24214660	secA	LA1960	-	preprotein translocase subunit SecA
1961	 34.93	0	1930526..1930963	+	145	24214661	-	LA1961	-	hypothetical protein
1962	 38.89	0	1931064..1931441	+	125	24214662	-	LA1962	-	hypothetical protein
1963	 37.80	0	1931541..1932995	+	484	24214663	-	LA1963	-	outer membrane protein precursor CzcC
1964	 42.51	+1	1933568..1934014	+	148	24214664	-	LA1964	-	cation efflux system membrane protein
1965	 38.42	0	1934004..1934750	+	248	24214665	-	LA1965	-	outermembrane protein
1966	 40.90	+1	1934756..1938085	+	1109	24214666	czcA2	LA1966	-	cation efflux system protein
1967	 39.72	0	1938620..1941940	+	1106	24214667	czcA3	LA1967	-	cation efflux system protein
1968	 40.16	+1	1942469..1944124	-	551	24214668	-	LA1968	-	outermembrane protein
1969	 26.85	-1	1944290..1944397	-	35	24214669	-	LA1969	-	hypothetical protein
1970	 34.26	0	1945541..1946839	-	432	24214670	papS	LA1970	-	Poly(A) polymerase
1971	 31.09	0	1946832..1947233	-	133	24214671	-	LA1971	-	hypothetical protein
1972	 40.00	+1	1947579..1947968	-	129	24214672	rnhA	LA1972	-	ribonuclease H-like protein
1973	 30.82	0	1947965..1948282	-	105	24214673	-	LA1973	-	hypothetical protein
1974	 33.98	0	1948666..1949439	+	257	24214674	-	LA1974	-	arginyl-tRNA-protein transferase
1975	 32.41	0	1949409..1949516	-	35	24214675	-	LA1976	-	hypothetical protein
1976	 38.46	0	1949500..1950240	+	246	24214676	-	LA1975	-	3-oxoacyl-(acyl carrier protein) reductase
1977	 36.13	0	1950259..1951761	+	500	24214677	-	LA1977	-	oxidoreductase, FAD-binding
1978	 32.19	0	1951762..1953243	+	493	24214678	-	LA1978	-	hypothetical protein
1979	 35.10	0	1953262..1954395	+	377	24214679	-	LA1979	-	glycosyl transferase
1980	 31.56	0	1954740..1955414	+	224	24214680	-	LA1980	-	hypothetical protein
1981	 30.68	0	1956255..1957877	-	540	24214681	-	LA1981	-	hypothetical protein
1982	 32.43	0	1957881..1959866	-	661	24214682	-	LA1982	-	hypothetical protein
1983	 31.52	0	1959977..1961794	-	605	24214683	-	LA1984	-	hypothetical protein
1984	 34.51	0	1961776..1963050	+	424	24214684	-	LA1983	-	hypothetical protein
1985	 35.31	0	1964315..1965427	-	370	24214685	-	LA1985	-	hypothetical protein
1986	 40.28	+1	1965498..1967024	+	508	24214686	-	LA1986	-	inosine-5'-monophosphate dehydrogenase
1987	 33.59	0	1967025..1967807	+	260	24214687	-	LA1987	-	outermembrane protein
1988	 35.79	0	1967816..1968508	+	230	24214688	-	LA1988	-	hypothetical protein
1989	 36.49	0	1968498..1968782	-	94	24214689	-	LA1989	-	outermembrane protein
35.02	MEAN

4.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.