IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1853	 33.79	0	1823379..1823819	+	146	24214553	-	LA1853	-	hypothetical protein
1854	 42.77	+1	1824621..1826051	+	476	24214554	-	LA1854	-	hypothetical protein
1855	 42.71	+1	1826052..1826915	-	287	24214555	flgG1	LA1855	-	flagellar hook protein
1856	 29.24	-1	1827711..1827881	+	56	24214556	-	LA1856	-	hypothetical protein
1857	 33.11	0	1827966..1828403	-	145	24214557	-	LA1857	-	ferric uptake regulation protein
1858	 33.88	0	1828892..1829437	+	181	24214558	-	LA1858	-	ankyrin repeat-containing protein
1859	 38.44	0	1829395..1830882	+	495	24214559	catA	LA1859	-	catalase
1860	 36.26	0	1831286..1833505	+	739	24214560	-	LA1860	-	two-component hybrid sensor and regulator
1861	 35.10	0	1833818..1834948	-	376	24214561	-	LA1861	-	hypothetical protein
1862	 35.60	0	1835739..1836401	-	220	24214562	-	LA1862	-	tRNA/rRNA methyltransferase
1863	 36.65	0	1836491..1837906	-	471	24214563	cysS	LA1863	-	cysteinyl-tRNA synthetase
1864	 37.78	0	1837903..1838868	-	321	24214564	axeA	LA1864	-	acetyl xylan esterase
1865	 40.23	+1	1838884..1839738	-	284	24214565	folD	LA1865	-	FolD bifunctional protein
1866	 39.37	0	1839820..1841127	+	435	24214566	asnC	LA1866	-	asparaginyl-tRNA synthetase
1867	 34.47	0	1841527..1842318	+	263	24214567	-	LA1867	-	hypothetical protein
1868	 27.25	-1	1843595..1843972	+	125	24214568	-	LA1868	-	hypothetical protein
1869	 27.83	-1	1844020..1844364	+	114	24214569	-	LA1869	-	hypothetical protein
1870	 28.24	-1	1844343..1844597	+	84	24214570	-	LA1870	-	hypothetical protein
1871	 21.09	-2	1844862..1845008	+	48	24214571	-	LA1871	-	hypothetical protein
1872	 32.95	0	1845135..1845908	+	257	24214572	-	LA1872	-	hypothetical protein
1873	 40.11	+1	1845943..1846473	-	176	24214573	-	LA1873	-	hypothetical protein
1874	 35.12	0	1847288..1848127	-	279	24214574	-	LA1874	-	hypothetical protein
1875	 37.23	0	1848186..1850162	-	658	24214575	-	LA1875	-	ATP-dependent DNA helicase
1876	 32.54	0	1850159..1850284	-	41	24214576	-	LA1876	-	hypothetical protein
1877	 37.89	0	1850281..1851816	-	511	24214577	-	LA1877	-	SNF family Na(+)/neurotransmitter symporter
1878	 39.32	0	1851836..1851952	-	38	24214578	-	LA1878	-	hypothetical protein
1879	 38.56	0	1852280..1854862	+	860	24214579	clpB	LA1879	-	ABC transporter ATPase
1880	 35.92	0	1855009..1855434	-	141	24214580	-	LA1880	-	transcriptional regulator
1881	 19.05	-2	1856872..1856976	-	34	24214581	-	LA1881	-	hypothetical protein
1882	 25.19	-2	1857399..1857533	-	44	24214582	-	LA1882	-	hypothetical protein
1883	 34.32	0	1857770..1859287	-	505	24214583	-	LA1883	-	hypothetical protein
1884	 35.88	0	1859306..1859659	-	117	24214584	-	LA1884	-	hypothetical protein
1885	 33.63	0	1859656..1860318	-	220	24214585	-	LA1885	-	hypothetical protein
1886	 36.18	0	1860324..1860674	+	116	24214586	-	LA1886	-	anti-sigma factor antagonist
1887	 35.31	0	1860686..1861444	+	252	24214587	-	LA1887	-	hypothetical protein
1888	 38.71	0	1861570..1863372	+	600	24214588	lepA	LA1888	-	GTP-binding protein LepA
1889	 32.17	0	1863702..1864643	+	313	24214589	-	LA1889	-	1-aminocyclopropane-1-carboxylate deaminase
1890	 32.37	0	1865535..1866260	+	241	24214590	-	LA1890	-	hypothetical protein
1891	 34.04	0	1866484..1866624	-	46	24214591	-	LA1891	-	hypothetical protein
1892	 31.14	0	1866958..1867686	-	242	24214592	-	LA1892	-	hypothetical protein
1893	 26.83	-1	1867676..1867798	-	40	24214593	-	LA1893	-	hypothetical protein
1894	 35.33	0	1867854..1868303	+	149	24214594	-	LA1894	-	hypothetical protein
1895	 34.63	0	1868278..1868508	+	76	24214595	-	LA1895	-	hypothetical protein
1896	 46.58	+2	1868706..1869437	-	243	24214596	sdhB	LA1896	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
1897	 43.57	+1	1869437..1871350	-	637	24214597	sdhA	LA1897	-	succinate dehydrogenase flavoprotein subunit
1898	 41.70	+1	1871369..1872049	-	226	24214598	-	LA1898	-	cytochrome B subunit
1899	 33.60	0	1872322..1873848	+	508	24214599	-	LA1899	-	aldo/keto reductase family protein
1900	 35.91	0	1873838..1874302	+	154	24214600	-	LA1900	-	hypothetical protein
1901	 22.86	-2	1874278..1874382	+	34	24214601	-	LA1901	-	hypothetical protein
1902	 33.81	0	1874545..1874964	+	139	24214602	-	LA1902	-	hypothetical protein
1903	 33.33	0	1875036..1875419	+	127	24214603	-	LA1903	-	hypothetical protein
1904	 35.22	0	1875748..1876596	+	282	24214604	-	LA1904	-	hypothetical protein
1905	 36.02	0	1876606..1877943	+	445	24214605	-	LA1905	-	outermembrane protein
1906	 39.35	0	1878028..1878243	+	71	24214606	-	LA1906	-	hypothetical protein
1907	 27.00	-1	1878327..1878563	-	78	24214607	-	LA1907	-	hypothetical protein
1908	 35.35	0	1878626..1879072	-	148	24214608	-	LA1908	-	hypothetical protein
1909	 28.21	-1	1879491..1879607	-	38	24214609	-	LA1909	-	hypothetical protein
1910	 37.91	0	1879914..1880219	-	101	24214610	-	LA1910	-	hypothetical protein
1911	 37.62	0	1880379..1881614	-	411	24214611	serA	LA1911	-	D-3-phosphoglycerate dehydrogenase
1912	 32.96	0	1881819..1882355	+	178	24214612	-	LA1912	-	outermembrane protein
1913	 31.48	0	1882464..1882679	-	71	24214613	-	LA1913	-	hypothetical protein
1914	 23.48	-2	1882709..1882840	-	43	24214614	-	LA1914	-	hypothetical protein
1915	 40.42	+1	1882896..1886495	-	1199	24214615	-	LA1915	-	TPR repeat-containing protein
1916	 35.75	0	1886649..1887557	+	302	24214616	-	LA1916	-	isoamylase family protein
1917	 35.64	0	1887604..1888341	+	245	24214617	-	LA1917	-	hypothetical protein
1918	 33.33	0	1888546..1888815	+	89	24214618	-	LA1918	-	hypothetical protein
1919	 30.64	0	1888989..1890584	-	531	24214619	-	LA1919	-	regulatory protein
1920	 42.75	+1	1892061..1892336	+	91	24214620	rbpA2	LA1920	-	RNA-binding protein
1921	 37.70	0	1892652..1892834	+	60	24214621	-	LA1921	-	hypothetical protein
1922	 28.68	-1	1893062..1893190	-	42	24214622	-	LA1923	-	hypothetical protein
1923	 35.50	0	1893183..1893920	+	245	24214623	-	LA1922	-	MORN repeat-containing protein
1924	 34.61	0	1894933..1896027	-	364	24214624	-	LA1924	-	hypothetical protein
1925	 35.46	0	1896029..1896829	-	266	24214625	tatC	LA1925	-	Sec-independent protein translocase protein tatC
1926	 39.56	0	1896826..1897098	-	90	24214626	-	LA1926	-	mttA/Hcf106 family protein
1927	 34.20	0	1897487..1898296	+	269	24214627	-	LA1927	-	hypothetical protein
1928	 38.06	0	1898302..1898661	+	119	24214628	trxA	LA1928	-	thioredoxin (TRX)
1929	 37.08	0	1898684..1900843	+	719	24214629	cgs1	LA1929	-	cAMP-dependent protein kinase regulatory chain
1930	 40.05	+1	1900861..1901991	+	376	24214630	-	LA1930	-	Acyl-CoA dehydrogenase
1931	 41.22	+1	1902031..1903209	+	392	24214631	-	LA1931	-	outermembrane protein
1932	 34.31	0	1903315..1903926	+	203	24214632	-	LA1932	-	hypothetical protein
1933	 35.58	0	1904646..1905983	-	445	24214633	tetA2	LA1933	-	tetracycline resistance protein
1934	 37.81	0	1906026..1906427	-	133	24214634	-	LA1934	-	hypothetical protein
1935	 38.22	0	1906471..1907043	-	190	24214635	-	LA1935	-	hypothetical protein
1936	 38.03	0	1907103..1908974	-	623	24214636	-	LA1936	-	alpha/beta fold family hydrolase/acetyltransferase
1937	 39.96	+1	1910320..1910877	-	185	24214637	-	LA1937	-	CopG family transcriptional regulator
1938	 29.71	-1	1911293..1911430	+	45	24214638	-	LA1938	-	hypothetical protein
1939	 33.75	0	1911998..1912477	-	159	24214639	-	LA1939	-	outermembrane protein
1940	 30.13	-1	1912580..1912735	+	51	24214640	-	LA1940	-	hypothetical protein
1941	 33.08	0	1913206..1913607	-	133	24214641	-	LA1941	-	hypothetical protein
1942	 32.17	0	1913929..1914273	-	114	24214642	-	LA1942	-	hypothetical protein
1943	 36.75	0	1914587..1914703	-	38	24214643	-	LA1943	-	hypothetical protein
1944	 34.34	0	1914832..1915029	-	65	24214644	-	LA1944	-	lipoprotein
1945	 32.33	0	1915443..1916042	-	199	24214645	-	LA1945	-	hypothetical protein
1946	 32.94	0	1915993..1916502	-	169	24214646	-	LA1946	-	outermembrane protein
1947	 37.88	0	1916507..1917715	-	402	24214647	-	LA1947	-	outermembrane protein
1948	 39.67	0	1917732..1918220	-	162	24214648	-	LA1948	-	two-component response regulator
1949	 34.77	0	1918291..1919403	-	370	24214649	-	LA1949	-	hypothetical protein
1950	 38.68	0	1919667..1920227	-	186	24214650	-	LA1950	-	hypothetical protein
1951	 40.34	+1	1920897..1922195	+	432	24214651	eno	LA1951	-	enolase
1952	 26.67	-1	1922282..1922476	+	64	24214652	-	LA1952	-	hypothetical protein
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.