IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.02   STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1635	 29.10	-1	1630268..1631164	+	298	24214335	-	LA1635	-	glycosyl transferase
1636	 34.43	0	1631283..1631465	+	60	24214336	-	LA1636	-	hypothetical protein
1637	 31.39	0	1631593..1632003	+	136	24214337	-	LA1637	-	hypothetical protein
1638	 32.29	0	1632014..1632877	+	287	24214338	-	LA1638	-	polysaccharide deacetylase-like protein
1639	 30.70	0	1632862..1634991	+	709	24214339	-	LA1639	-	FemAB family protein
1640	 30.86	0	1634979..1637000	+	673	24214340	-	LA1640	-	lipoprotein
1641	 26.74	-1	1637205..1638494	+	429	24214341	-	LA1641	-	hypothetical protein
1642	 29.67	-1	1638584..1639729	+	381	24214342	-	LA1642	-	glycosyl transferase
1643	 33.91	0	1640247..1641281	+	344	24214343	-	LA1643	-	UDP-glucose 4-epimerase
1644	 31.79	0	1641288..1642388	+	366	24214344	-	LA1644	-	epimerase
1645	 34.92	0	1642392..1643522	+	376	24214345	-	LA1645	-	UDP-N-acetylglucosamine 2-epimerase
1646	 30.98	0	1643532..1644719	+	395	24214346	-	LA1646	-	glycosyl transferase
1647	 32.31	0	1644723..1645988	+	421	24214347	rfbP1	LA1647	-	colanic biosynthesis UDP-glucose lipid carrier transferase
1648	 26.56	-1	1646038..1647306	+	422	24214348	-	LA1648	-	hypothetical protein
1649	 33.71	0	1647630..1648973	+	447	24214349	rfbX	LA1649	-	polysaccharide biosynthesis protein
1650	 33.01	0	1648977..1649918	+	313	24214350	hlpA	LA1650	-	hemolysin hemolytic protein hlpA
1651	 37.39	0	1650021..1650242	+	73	24214351	-	LA1651	-	hypothetical protein
1652	 28.41	-1	1650619..1651512	+	297	24214352	-	LA1652	-	hypothetical protein
1653	 31.48	0	1652153..1653175	+	340	24214353	-	LA1653	-	hypothetical protein
1654	 31.67	0	1653325..1653744	+	139	24214354	-	LA1654	-	hypothetical protein
1655	 32.51	0	1653758..1654849	+	363	24214355	-	LA1655	-	DegT/DnrJ/EryC1/StrS family protein
1656	 26.44	-1	1654992..1655789	+	265	24214356	-	LA1656	-	glycosyl transferase
1657	 34.18	0	1656299..1657120	+	273	24214357	-	LA1657	-	glycosyl transferase
1658	 31.33	0	1657834..1659582	+	582	24214358	-	LA1658	-	glycosyl transferase
1659	 37.08	0	1659778..1660338	+	186	24214359	rfbC	LA1659	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1660	 36.92	0	1660342..1661262	+	306	24214360	rmlD	LA1660	-	dTDP-4-dehydrorhamnose reductase
1661	 36.85	0	1661199..1662308	+	369	24214361	rfbB4	LA1661	-	dTDP-glucose 4,6-dehydratase
1662	 37.18	0	1662309..1663193	+	294	24214362	rmlA	LA1662	-	glucose-1-phosphate thymidylyltransferase
1663	 35.18	0	1664175..1665149	+	324	24214363	-	LA1663	-	glycosyl transferase
1664	 29.17	-1	1665154..1666065	+	303	24214364	rfbF2	LA1664	-	dTDP-rhamnosyl transferase rfbF
1665	 32.32	0	1666150..1666347	-	65	24214365	-	LA1665	-	hypothetical protein
1666	 30.86	0	1666391..1667239	+	282	24214366	-	LA1666	-	glycosyl transferase
1667	 35.48	0	1667280..1668674	+	464	24214367	-	LA1667	-	Sodium:sulfate symporter
1668	 36.26	0	1669894..1670064	+	56	24214368	-	LA1668	-	hypothetical protein
1669	 34.94	0	1670065..1670499	+	144	24214369	-	LA1669	-	hypothetical protein
1670	 32.79	0	1670557..1670739	+	60	24214370	-	LA1670	-	hypothetical protein
1671	 42.14	+1	1670798..1672750	+	650	24214371	-	LA1671	-	ankyrin repeat-containing protein
1672	 33.91	0	1672813..1672986	-	57	24214372	-	LA1673	-	hypothetical protein
1673	 32.61	0	1672970..1673107	+	45	24214373	-	LA1672	-	hypothetical protein
1674	 38.05	0	1673131..1674360	+	409	24214374	capA2	LA1674	-	capsule biosynthesis protein capA
1675	 42.03	+1	1674425..1674700	+	91	24214375	rpsF	LA1675	-	30S ribosomal protein S6
1676	 40.84	+1	1674693..1675145	+	150	24214376	-	LA1676	-	single-stranded DNA-binding protein
1677	 39.74	0	1675157..1675468	+	103	24214377	rpsR	LA1677	-	30S ribosomal protein S18
1678	 39.56	0	1675478..1675927	+	149	24214378	rplI	LA1678	-	50S ribosomal protein L9
1679	 41.16	+1	1675945..1677273	+	442	24214379	dnaB	LA1679	-	replicative DNA helicase B
1680	 38.15	0	1677306..1679111	+	601	24214380	aspS	LA1680	-	aspartyl-tRNA synthetase
1681	 38.19	0	1679221..1679508	+	95	24214381	-	LA1681	-	hypothetical protein
1682	 39.54	0	1679539..1680102	+	187	24214382	phoH	LA1682	-	phosphate starvation-inducible protein PhoH, ATPase
1683	 37.27	0	1680107..1682521	+	804	24214383	-	LA1683	-	HD family protein
1684	 35.92	0	1682590..1683015	+	141	24214384	-	LA1684	-	hypothetical protein
1685	 37.80	0	1682988..1683770	+	260	24214385	recO	LA1685	-	recombination protein O
1686	 31.40	0	1683742..1683999	+	85	24214386	-	LA1686	-	hypothetical protein
1687	 39.05	0	1683986..1684405	+	139	24214387	-	LA1687	-	hypothetical protein
1688	 35.79	0	1684372..1686162	+	596	24214388	argS	LA1688	-	arginyl-tRNA synthetase
1689	 38.42	0	1686162..1687418	+	418	24214389	cinA	LA1689	-	competence-damage inducible protein cinA
1690	 34.91	0	1687415..1688494	+	359	24214390	-	LA1690	-	hypothetical protein
1691	 36.60	0	1688772..1690208	-	478	24214391	-	LA1691	-	outermembrane protein
1692	 35.05	0	1690765..1691757	-	330	24214392	-	LA1692	-	two-component response regulator
1693	 36.51	0	1691757..1692890	-	377	24214393	-	LA1693	-	sensory transduction histidine kinase
1694	 33.79	0	1692897..1693553	-	218	24214394	-	LA1694	-	hypothetical protein
1695	 42.42	+1	1693621..1694016	-	131	24214395	secG	LA1695	-	preprotein translocase subunit SecG
1696	 37.05	0	1694053..1694805	-	250	24214396	tpiA	LA1696	-	triosephosphate isomerase
1697	 24.31	-2	1695098..1695241	+	47	24214397	-	LA1697	-	hypothetical protein
1698	 33.33	0	1695428..1696252	+	274	24214398	-	LA1698	-	hypothetical protein
1699	 26.98	-1	1696291..1696416	-	41	24214399	-	LA1699	-	hypothetical protein
1700	 40.18	+1	1696912..1697130	-	72	24214400	-	LA1700	-	hypothetical protein
1701	 29.89	-1	1697216..1698028	-	270	24214401	-	LA1701	-	hypothetical protein
1702	 32.67	0	1698113..1699012	-	299	24214402	-	LA1702	-	hypothetical protein
1703	 40.22	+1	1699051..1700241	-	396	24214403	pgk	LA1703	-	phosphoglycerate kinase
1704	 40.58	+1	1700245..1701252	-	335	24214404	gapL	LA1704	-	glyceraldehyde 3-phosphate dehydrogenase 1
1705	 31.22	0	1701452..1701640	-	62	24214405	-	LA1705	-	hypothetical protein
1706	 32.62	0	1701771..1701911	-	46	24214406	-	LA1706	-	hypothetical protein
1707	 35.46	0	1702110..1702532	+	140	24214407	-	LA1707	-	hypothetical protein
1708	 23.68	-2	1702889..1703002	-	37	24214408	-	LA1708	-	hypothetical protein
1709	 30.97	0	1703013..1703435	-	140	24214409	-	LA1709	-	two-component response regulator
1710	 33.47	0	1703440..1704195	-	251	24214410	-	LA1710	-	sensory transduction histidine kinase
1711	 39.00	0	1704173..1704895	-	240	24214411	-	LA1711	-	PAS/PAC domain-containing protein
1712	 37.71	0	1705062..1705541	-	159	24214412	sipA	LA1712	-	Signal peptidase I
1713	 30.89	0	1705619..1705741	-	40	24214413	-	LA1714	-	hypothetical protein
1714	 35.90	0	1705729..1706274	+	181	24214414	-	LA1713	-	hypothetical protein
1715	 36.59	0	1706558..1707631	+	357	24214415	-	LA1715	-	hypothetical protein
1716	 32.59	0	1707727..1707861	+	44	24214416	-	LA1716	-	hypothetical protein
1717	 30.08	-1	1707969..1708091	+	40	24214417	-	LA1717	-	hypothetical protein
1718	 25.93	-1	1708094..1708255	+	53	24214418	-	LA1718	-	hypothetical protein
1719	 40.75	+1	1708307..1709236	+	309	24214419	cysK	LA1719	-	cysteine synthase
1720	 33.33	0	1710326..1710469	-	47	24214420	-	LA1720	-	hypothetical protein
1721	 34.47	0	1710779..1712620	+	613	24214421	topA	LA1721	-	DNA topoisomerase I
1722	 30.43	0	1712966..1713103	-	45	24214422	-	LA1722	-	hypothetical protein
1723	 25.71	-1	1713229..1713333	-	34	24214423	-	LA1723	-	hypothetical protein
1724	 34.93	0	1713813..1714625	-	270	24214424	-	LA1724	-	ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA
1725	 35.11	0	1714622..1716199	-	525	24214425	-	LA1726	-	HD family protein
1726	 34.97	0	1716170..1716475	+	101	24214426	-	LA1725	-	hypothetical protein
1727	 37.50	0	1716459..1716722	+	87	24214427	-	LA1727	-	hypothetical protein
1728	 36.16	0	1717191..1718039	-	282	24214428	-	LA1728	-	outermembrane protein
1729	 42.74	+1	1718129..1718479	-	116	24214429	panD	LA1729	-	aspartate alpha-decarboxylase
1730	 33.71	0	1718491..1719024	-	177	24214430	-	LA1730	-	hypothetical protein
1731	 35.79	0	1719037..1719687	+	216	24214431	lipB	LA1731	-	lipoate-protein ligase B
1732	 37.50	0	1719757..1719900	-	47	24214432	-	LA1732	-	hypothetical protein
1733	 35.31	0	1720116..1721279	+	387	24214433	-	LA1733	-	hypothetical protein
1734	 36.76	0	1721286..1722218	+	310	24214434	-	LA1734	-	anti-sigma F factor antagonist
35.02	MEAN

4.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.