IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.02   STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1333	 43.05	+1	1326606..1328108	+	500	24214033	amic	LA1333	-	amidase
1334	 37.78	0	1329076..1330245	+	389	24214034	-	LA1334	-	oxidoreductase
1335	 37.07	0	1330257..1331969	+	570	24214035	-	LA1335	-	ABC1 family protein kinase
1336	 36.61	0	1331966..1332514	+	182	24214036	lspA	LA1336	-	lipoprotein signal peptidase
1337	 38.07	0	1332519..1333046	+	175	24214037	-	LA1337	-	cyclic nucleotide binding protein
1338	 37.27	0	1333039..1334106	+	355	24214038	-	LA1338	-	hypothetical protein
1339	 35.48	0	1334836..1335765	-	309	24214039	-	LA1339	-	hypothetical protein
1340	 37.67	0	1336074..1337018	-	314	24214040	nctP1	LA1340	-	sodium bile acid symporter family Na(+) dependent transporter
1341	 30.00	-1	1337269..1337448	-	59	24214041	-	LA1341	-	hypothetical protein
1342	 24.07	-2	1337467..1337574	-	35	24214042	-	LA1342	-	hypothetical protein
1343	 37.52	0	1337742..1338458	+	238	24214043	-	LA1343	-	hypothetical protein
1344	 25.93	-1	1338603..1338764	-	53	24214044	-	LA1344	-	hypothetical protein
1345	 37.28	0	1338791..1340692	-	633	24214045	-	LA1345	-	hypothetical protein
1346	 17.14	-2	1340744..1340848	+	34	24214046	-	LA1346	-	hypothetical protein
1347	 35.05	0	1340890..1341354	-	154	24214047	-	LA1347	-	two-component response regulator
1348	 32.69	0	1341338..1342726	-	462	24214048	-	LA1348	-	sensory transduction histidine kinase
1349	 22.40	-2	1343416..1343607	-	63	24214049	-	LA1349	-	hypothetical protein
1350	 37.68	0	1343609..1344229	-	206	24214050	ubiG	LA1350	-	3-demethylubiquinone-9 3-methyltransferase
1351	 39.55	0	1344559..1345587	+	342	24214051	capA1	LA1351	-	capsule biosynthesis protein capA
1352	 36.59	0	1345978..1346100	+	40	24214052	-	LA1352	-	hypothetical protein
1353	 35.97	0	1346621..1347151	+	176	24214053	-	LA1353	-	leucine-rich repeat-containing protein
1354	 34.00	0	1347226..1347525	+	99	24214054	-	LA1354	-	leucine-rich repeat-containing protein
1355	 30.56	0	1347591..1347734	-	47	24214055	-	LA1355	-	hypothetical protein
1356	 38.69	0	1348177..1350231	+	684	24214056	cirA	LA1356	-	TonB-dependent receptor
1357	 40.72	+1	1350233..1351396	+	387	24214057	-	LA1357	-	hypothetical protein
1358	 37.60	0	1352020..1352676	+	218	24214058	-	LA1358	-	ankyrin repeat-containing protein
1359	 36.64	0	1353154..1353606	+	150	24214059	-	LA1359	-	hypothetical protein
1360	 27.89	-1	1354008..1354154	+	48	24214060	-	LA1360	-	hypothetical protein
1361	 36.78	0	1354666..1355739	+	357	24214061	-	LA1361	-	transposase
1362	 33.33	0	1355959..1356474	+	171	24214062	-	LA1362	-	hypothetical protein
1363	 38.18	0	1356648..1357844	+	398	24214063	-	LA1363	-	hypothetical protein
1364	 36.83	0	1357851..1358222	+	123	24214064	-	LA1364	-	hypothetical protein
1365	 33.86	0	1358258..1359790	+	510	24214065	-	LA1365	-	alginate o-acetyltransferase
1366	 35.05	0	1359753..1360973	+	406	24214066	-	LA1366	-	hypothetical protein
1367	 25.93	-1	1361225..1361332	-	35	24214067	-	LA1367	-	hypothetical protein
1368	 33.23	0	1361552..1363543	-	663	24214068	-	LA1368	-	outermembrane protein
1369	 28.67	-1	1363733..1364290	+	185	24214069	-	LA1369	-	hypothetical protein
1370	 36.14	0	1364293..1364934	-	213	24214070	mag1	LA1370	-	DNA-3-methyladenine glycosylase
1371	 32.10	0	1364967..1365128	+	53	24214071	-	LA1371	-	hypothetical protein
1372	 40.33	+1	1365106..1366335	+	409	24214072	tetA1	LA1372	-	tetracycline resistance protein, class A
1373	 27.13	-1	1366357..1366485	-	42	24214073	-	LA1373	-	hypothetical protein
1374	 36.31	0	1367191..1368198	+	335	24214074	-	LA1374	-	Pirin-related protein
1375	 39.30	0	1368460..1369782	-	440	24214075	-	LA1375	-	hypothetical protein
1376	 26.83	-1	1370442..1370564	+	40	24214076	-	LA1376	-	hypothetical protein
1377	 41.33	+1	1370663..1371250	-	195	24214077	-	LA1377	-	hypothetical protein
1378	 42.89	+1	1371845..1373665	+	606	24214078	typA	LA1378	-	GTP-binding protein TYPA/BIPA-like protein
1379	 25.00	-2	1373797..1373904	-	35	24214079	-	LA1379	-	hypothetical protein
1380	 21.28	-2	1374349..1374489	+	46	24214080	-	LA1380	-	hypothetical protein
1381	 22.58	-2	1374706..1374891	+	61	24214081	-	LA1381	-	hypothetical protein
1382	 31.68	0	1374962..1376173	+	403	24214082	-	LA1382	-	acyltransferase
1383	 36.55	0	1376527..1377708	+	393	24214083	-	LA1383	-	ThiJ/PfpI family protein
1384	 34.64	0	1378593..1379513	-	306	24214084	-	LA1384	-	hypothetical protein
1385	 25.71	-1	1379673..1380131	-	152	24214085	-	LA1385	-	hypothetical protein
1386	 30.67	0	1380896..1381045	+	49	24214086	-	LA1386	-	hypothetical protein
1387	 36.94	0	1381106..1381216	-	36	24214087	-	LA1387	-	hypothetical protein
1388	 38.71	0	1381357..1382751	-	464	24214088	glyS	LA1388	-	glycyl-tRNA synthetase
1389	 38.72	0	1382816..1384540	+	574	24214089	-	LA1389	-	hypothetical protein
1390	 37.85	0	1384537..1385289	+	250	24214090	-	LA1390	-	MttB family protein
1391	 38.10	0	1385286..1386188	+	300	24214091	prmA	LA1391	-	ribosomal protein L11 methyltransferase
1392	 40.63	+1	1386193..1387179	+	328	24214092	pfkB	LA1392	-	ribokinase
1393	 32.53	0	1388268..1388639	-	123	24214093	-	LA1393	-	hypothetical protein
1394	 34.78	0	1388705..1388911	+	68	24214094	-	LA1394	-	hypothetical protein
1395	 30.95	0	1388962..1389129	-	55	24214095	-	LA1395	-	hypothetical protein
1396	 34.02	0	1389244..1389822	-	192	24214096	-	LA1396	-	hypothetical protein
1397	 34.86	0	1389836..1392790	-	984	24214097	-	LA1397	-	protein export membrane protein SecD/SecF
1398	 36.23	0	1392797..1393453	-	218	24214098	-	LA1398	-	outermembrane protein
1399	 25.53	-1	1393637..1393777	+	46	24214099	-	LA1399	-	hypothetical protein
1400	 37.75	0	1395464..1397410	+	648	24214100	-	LA1400	-	hypothetical protein
1401	 17.50	-2	1397596..1397715	-	39	24214101	-	LA1401	-	hypothetical protein
1402	 38.50	0	1398328..1400319	+	663	24214102	-	LA1402	-	hypothetical protein
1403	 36.14	0	1402320..1402640	+	106	24214103	-	LA1403	-	hypothetical protein
1404	 40.24	+1	1402637..1403824	+	395	24214104	-	LA1404	-	outermembrane protein
1405	 22.22	-2	1403992..1404126	+	44	24214105	-	LA1405	-	hypothetical protein
1406	 37.55	0	1404927..1406255	-	442	24214106	-	LA1406	-	sterol desaturase-related protein
1407	 34.04	0	1406462..1406602	-	46	24214107	-	LA1407	-	hypothetical protein
1408	 31.58	0	1406984..1407097	-	37	24214108	-	LA1408	-	hypothetical protein
1409	 42.07	+1	1407159..1408406	-	415	24214109	glyA	LA1409	-	serine hydroxymethyltransferase
1410	 35.76	0	1408446..1409432	-	328	24214110	-	LA1410	-	lipoate-protein ligase A
1411	 28.47	-1	1410195..1410338	-	47	24214111	-	LA1411	-	hypothetical protein
1412	 35.78	0	1410319..1411341	-	340	24214112	-	LA1412	-	hypothetical protein
1413	 30.89	0	1411332..1411454	-	40	24214113	-	LA1414	-	hypothetical protein
1414	 37.77	0	1411454..1412536	+	360	24214114	-	LA1413	-	hypothetical protein
1415	 33.97	0	1412590..1412745	-	51	24214115	-	LA1415	-	hypothetical protein
1416	 42.55	+1	1413232..1414077	+	281	24214116	-	LA1416	-	carboxyphosphonoenolpyruvate phosphonomutase-like protein
1417	 40.52	+1	1414447..1414905	+	152	24214117	gloA	LA1417	-	lactoylglutathione lyase
1418	 30.63	0	1415373..1415483	-	36	24214118	-	LA1418	-	hypothetical protein
1419	 35.84	0	1415873..1417351	-	492	24214119	cyaA7	LA1419	-	adenylate cyclase
1420	 35.47	0	1417358..1417732	-	124	24214120	-	LA1420	-	hypothetical protein
1421	 36.58	0	1417735..1418289	-	184	24214121	-	LA1421	-	hypothetical protein
1422	 37.49	0	1418327..1423669	-	1780	24214122	-	LA1422	-	Serine/threonine protein kinase
1423	 42.31	+1	1423694..1424662	-	322	24214123	fabH	LA1423	-	3-oxoacyl-[acyl-carrier-protein] synthase III
1424	 41.19	+1	1424696..1426477	-	593	24214124	scoA	LA1424	-	succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A
1425	 33.56	0	1426897..1427760	+	287	24214125	-	LA1425	-	hypothetical protein
1426	 26.42	-1	1427914..1428072	-	52	24214126	-	LA1426	-	hypothetical protein
1427	 38.91	0	1428115..1428885	+	256	24214127	-	LA1427	-	3-oxoacyl-(acyl carrier protein) reductase
1428	 38.40	0	1429583..1430392	+	269	24214128	-	LA1428	-	protein phosphatase
1429	 32.01	0	1430367..1430894	-	175	24214129	-	LA1429	-	hypothetical protein
1430	 41.98	+1	1430905..1432200	-	431	24214130	-	LA1430	-	3-oxoacyl-[acyl-carrier-protein] synthase
1431	 25.56	-1	1432954..1433133	-	59	24214131	-	LA1431	-	hypothetical protein
1432	 35.70	0	1433545..1433967	-	140	24214132	-	LA1432	-	two-component response regulator
35.02	MEAN

4.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.