IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.02   STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1252	 41.34	+1	1252861..1253934	+	357	24213952	cheB1	LA1252	-	chemotaxis response regulator CheB
1253	 42.42	+1	1253936..1254298	+	120	24213953	cheY	LA1253	-	CheY-like protein
1254	 38.55	0	1254316..1255101	+	261	24213954	-	LA1254	-	hypothetical protein
1255	 39.18	0	1255068..1255631	+	187	24213955	-	LA1255	-	hypothetical protein
1256	 40.65	+1	1255609..1256715	+	368	24213956	aroQ	LA1256	-	P-protein
1257	 36.38	0	1256712..1257629	+	305	24213957	tyrA	LA1257	-	prephenate dehydrogenase
1258	 38.62	0	1257610..1258932	+	440	24213958	aroA	LA1258	-	3-phosphoshikimate 1-carboxyvinyltransferase
1259	 37.30	0	1258859..1259614	+	251	24213959	-	LA1259	-	cytidylate kinase
1260	 37.55	0	1259667..1261349	+	560	24213960	rpsA	LA1260	-	30S ribosomal protein S1
1261	 36.69	0	1261374..1262117	+	247	24213961	-	LA1261	-	hypothetical protein
1262	 40.74	+1	1262114..1262734	+	206	24213962	hisG	LA1262	-	ATP phosphoribosyltransferase catalytic subunit
1263	 37.81	0	1263031..1263231	+	66	24213963	rpmF	LA1263	-	50S ribosomal protein L32
1264	 42.26	+1	1263237..1264244	+	335	24213964	plsX	LA1264	-	putative glycerol-3-phosphate acyltransferase PlsX
1265	 30.56	0	1264692..1264799	+	35	24213965	-	LA1265	-	hypothetical protein
1266	 31.67	0	1265023..1265142	-	39	24213966	-	LA1267	-	hypothetical protein
1267	 32.08	0	1265107..1265265	+	52	24213967	-	LA1266	-	hypothetical protein
1268	 33.33	0	1265271..1265384	+	37	24213968	-	LA1268	-	hypothetical protein
1269	 30.56	0	1265606..1265785	+	59	24213969	-	LA1269	-	hypothetical protein
1270	 33.33	0	1265859..1266029	+	56	24213970	-	LA1270	-	hypothetical protein
1271	 36.71	0	1266082..1266288	+	68	24213971	-	LA1271	-	hypothetical protein
1272	 31.34	0	1266483..1267034	-	183	24213972	-	LA1272	-	transcriptional regulator
1273	 36.33	0	1267951..1268451	-	166	24213973	-	LA1273	-	hypothetical protein
1274	 23.58	-2	1268607..1268729	+	40	24213974	-	LA1274	-	hypothetical protein
1275	 26.50	-1	1268788..1268904	+	38	24213975	-	LA1275	-	hypothetical protein
1276	 33.86	0	1269050..1270963	+	637	24213976	-	LA1276	-	sulfatase
1277	 35.09	0	1271338..1271451	+	37	24213977	-	LA1277	-	hypothetical protein
1278	 30.52	0	1271773..1271985	+	70	24213978	-	LA1278	-	hypothetical protein
1279	 28.99	-1	1272207..1272344	-	45	24213979	-	LA1279	-	hypothetical protein
1280	 35.70	0	1272413..1274401	-	662	24213980	-	LA1280	-	sulfatase family protein
1281	 28.51	-1	1274561..1274788	+	75	24213981	-	LA1281	-	hypothetical protein
1282	 36.51	0	1275022..1275777	+	251	24213982	-	LA1282	-	TetR family transcriptional regulator
1283	 40.07	+1	1275808..1276623	+	271	24213983	-	LA1283	-	hypothetical protein
1284	 39.14	0	1276623..1277861	+	412	24213984	-	LA1284	-	lipoprotein releasing system transmembrane protein lolC
1285	 36.78	0	1277851..1278576	+	241	24213985	-	LA1285	-	ABC transporter, ATP-binding protein
1286	 36.25	0	1278625..1279857	+	410	24213986	-	LA1286	-	hypothetical protein
1287	 33.33	0	1280153..1280263	+	36	24213987	-	LA1287	-	hypothetical protein
1288	 26.54	-1	1280271..1280432	-	53	24213988	-	LA1288	-	hypothetical protein
1289	 36.11	0	1280448..1280699	+	83	24213989	-	LA1289	-	hypothetical protein
1290	 30.71	0	1281139..1281558	-	139	24213990	-	LA1290	-	hypothetical protein
1291	 33.99	0	1281515..1282126	-	203	24213991	-	LA1291	-	hypothetical protein
1292	 32.86	0	1282628..1283479	-	283	24213992	-	LA1292	-	Type III leader peptidase family protein
1293	 35.42	0	1283463..1284563	-	366	24213993	-	LA1293	-	aminotransferase
1294	 35.56	0	1285664..1285798	-	44	24213994	-	LA1294	-	hypothetical protein
1295	 37.88	0	1285872..1288775	+	967	24213995	-	LA1295	-	hypothetical protein
1296	 34.92	0	1289106..1289231	+	41	24213996	-	LA1296	-	hypothetical protein
1297	 38.69	0	1289319..1289897	+	192	24213997	-	LA1297	-	hypothetical protein
1298	 28.33	-1	1289993..1290112	+	39	24213998	-	LA1298	-	hypothetical protein
1299	 39.40	0	1290285..1292543	-	752	24213999	-	LA1299	-	ankyrin repeat-containing protein
1300	 26.42	-1	1292605..1292763	+	52	24214000	-	LA1300	-	hypothetical protein
1301	 36.31	0	1292766..1292933	-	55	24214001	-	LA1301	-	hypothetical protein
1302	 34.58	0	1293293..1293775	+	160	24214002	smpB	LA1302	-	SsrA-binding protein
1303	 38.57	0	1293800..1295269	+	489	24214003	engA	LA1303	-	GTP-binding protein EngA
1304	 36.56	0	1295266..1295916	+	216	24214004	-	LA1304	-	hypothetical protein
1305	 36.33	0	1295891..1296691	+	266	24214005	-	LA1305	-	hypothetical protein
1306	 42.25	+1	1296780..1296992	+	70	24214006	-	LA1306	-	hypothetical protein
1307	 37.05	0	1298550..1300379	-	609	24214007	-	LA1307	-	hypothetical protein
1308	 40.74	+1	1300391..1300579	+	62	24214008	-	LA1308	-	hypothetical protein
1309	 33.60	0	1300650..1303244	+	864	24214009	-	LA1309	-	chromosome segregation protein
1310	 38.23	0	1303367..1303897	-	176	24214010	-	LA1310	-	hypothetical protein
1311	 25.76	-1	1304354..1304485	+	43	24214011	-	LA1311	-	hypothetical protein
1312	 37.80	0	1304464..1304754	-	96	24214012	-	LA1312	-	hypothetical protein
1313	 40.51	+1	1306526..1307947	+	473	24214013	glnA	LA1313	-	glutamine synthetase
1314	 46.20	+2	1307931..1308233	-	100	24214014	-	LA1314	-	hypothetical protein
1315	 34.17	0	1308257..1308376	-	39	24214015	-	LA1315	-	hypothetical protein
1316	 37.96	0	1308390..1308497	+	35	24214016	-	LA1316	-	hypothetical protein
1317	 40.32	+1	1308724..1309281	+	185	24214017	-	LA1317	-	hypothetical protein
1318	 35.46	0	1309421..1309561	+	46	24214018	-	LA1318	-	hypothetical protein
1319	 36.83	0	1309598..1310311	-	237	24214019	-	LA1319	-	hypothetical protein
1320	 34.75	0	1311254..1311394	+	46	24214020	-	LA1320	-	hypothetical protein
1321	 36.52	0	1311384..1312793	+	469	24214021	dsbD	LA1321	-	thiol:disulfide interchange protein DsbD
1322	 31.48	0	1313553..1313660	+	35	24214022	-	LA1322	-	hypothetical protein
1323	 40.48	+1	1314150..1316387	+	745	24214023	purL	LA1323	-	phosphoribosylformylglycinamidine synthase II
1324	 32.26	0	1316403..1317056	+	217	24214024	-	LA1324	-	leucine-rich repeat-containing protein
1325	 38.98	0	1317064..1319808	+	914	24214025	ileS	LA1325	-	isoleucyl-tRNA synthetase
1326	 35.76	0	1320187..1320927	-	246	24214026	-	LA1326	-	hypothetical protein
1327	 35.06	0	1320924..1321328	-	134	24214027	-	LA1327	-	anti-sigma factor antagonist
1328	 38.37	0	1321399..1323243	+	614	24214028	-	LA1328	-	hypothetical protein
1329	 37.50	0	1323259..1323978	+	239	24214029	-	LA1329	-	hypothetical protein
1330	 31.42	0	1323975..1324445	+	156	24214030	-	LA1330	-	hypothetical protein
1331	 32.28	0	1324575..1324763	+	62	24214031	-	LA1331	-	hypothetical protein
1332	 38.31	0	1325508..1326491	-	327	24214032	-	LA1332	-	outermembrane protein
1333	 43.05	+1	1326606..1328108	+	500	24214033	amic	LA1333	-	amidase
1334	 37.78	0	1329076..1330245	+	389	24214034	-	LA1334	-	oxidoreductase
1335	 37.07	0	1330257..1331969	+	570	24214035	-	LA1335	-	ABC1 family protein kinase
1336	 36.61	0	1331966..1332514	+	182	24214036	lspA	LA1336	-	lipoprotein signal peptidase
1337	 38.07	0	1332519..1333046	+	175	24214037	-	LA1337	-	cyclic nucleotide binding protein
1338	 37.27	0	1333039..1334106	+	355	24214038	-	LA1338	-	hypothetical protein
1339	 35.48	0	1334836..1335765	-	309	24214039	-	LA1339	-	hypothetical protein
1340	 37.67	0	1336074..1337018	-	314	24214040	nctP1	LA1340	-	sodium bile acid symporter family Na(+) dependent transporter
1341	 30.00	-1	1337269..1337448	-	59	24214041	-	LA1341	-	hypothetical protein
1342	 24.07	-2	1337467..1337574	-	35	24214042	-	LA1342	-	hypothetical protein
1343	 37.52	0	1337742..1338458	+	238	24214043	-	LA1343	-	hypothetical protein
1344	 25.93	-1	1338603..1338764	-	53	24214044	-	LA1344	-	hypothetical protein
1345	 37.28	0	1338791..1340692	-	633	24214045	-	LA1345	-	hypothetical protein
1346	 17.14	-2	1340744..1340848	+	34	24214046	-	LA1346	-	hypothetical protein
1347	 35.05	0	1340890..1341354	-	154	24214047	-	LA1347	-	two-component response regulator
1348	 32.69	0	1341338..1342726	-	462	24214048	-	LA1348	-	sensory transduction histidine kinase
1349	 22.40	-2	1343416..1343607	-	63	24214049	-	LA1349	-	hypothetical protein
1350	 37.68	0	1343609..1344229	-	206	24214050	ubiG	LA1350	-	3-demethylubiquinone-9 3-methyltransferase
1351	 39.55	0	1344559..1345587	+	342	24214051	capA1	LA1351	-	capsule biosynthesis protein capA
35.02	MEAN

4.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.