IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1181	 36.75	0	1187072..1188184	-	370	24213881	hisC	LA1182	-	histidinol-phosphate aminotransferase
1182	 30.16	-1	1188183..1188308	+	41	24213882	-	LA1181	-	hypothetical protein
1183	 33.88	0	1188314..1188496	+	60	24213883	-	LA1183	-	hypothetical protein
1184	 38.48	0	1188498..1190090	-	530	24213884	cyaA6	LA1184	-	adenylate cyclase
1185	 38.89	0	1190272..1191981	+	569	24213885	-	LA1185	-	response regulator receiver domain-containing protein
1186	 38.97	0	1192102..1192491	+	129	24213886	-	LA1186	-	two-component response regulator
1187	 30.23	0	1192788..1192916	+	42	24213887	-	LA1187	-	hypothetical protein
1188	 37.33	0	1193647..1194096	+	149	24213888	-	LA1188	-	outermembrane protein
1189	 32.29	0	1194261..1194548	+	95	24213889	-	LA1189	-	sigma-54 modulation protein
1190	 35.24	0	1194600..1195541	+	313	24213890	-	LA1190	-	hypothetical protein
1191	 38.44	0	1195570..1197645	-	691	24213891	-	LA1191	-	methyl-accepting chemotaxis protein
1192	 37.34	0	1197671..1199242	-	523	24213892	-	LA1192	-	outermembrane protein
1193	 28.81	-1	1199298..1199474	+	58	24213893	-	LA1193	-	hypothetical protein
1194	 26.02	-1	1200017..1200139	+	40	24213894	-	LA1194	-	hypothetical protein
1195	 33.33	0	1200110..1201255	-	381	24213895	-	LA1196	-	hypothetical protein
1196	 32.60	0	1201218..1201628	+	136	24213896	-	LA1195	-	hypothetical protein
1197	 35.70	0	1201594..1202985	+	463	24213897	-	LA1197	-	regulation protein
1198	 39.79	0	1202993..1203766	+	257	24213898	ech4	LA1198	-	enoyl-CoA hydratase
1199	 22.75	-2	1203969..1204157	-	62	24213899	-	LA1199	-	hypothetical protein
1200	 36.69	0	1204195..1204551	+	118	24213900	-	LA1200	-	hypothetical protein
1201	 33.63	0	1204652..1205317	-	221	24213901	-	LA1202	-	hypothetical protein
1202	 33.33	0	1205291..1205410	+	39	24213902	-	LA1201	-	hypothetical protein
1203	 36.56	0	1205434..1206888	+	484	24213903	-	LA1203	-	alginate o-acetyltransferase
1204	 37.78	0	1207021..1207380	+	119	24213904	-	LA1204	-	hypothetical protein
1205	 39.45	0	1207444..1208064	+	206	24213905	rpoE1	LA1205	-	RNA polymerase ECF-type sigma factor
1206	 34.18	0	1208045..1208632	+	195	24213906	-	LA1206	-	hypothetical protein
1207	 40.66	+1	1209323..1209745	+	140	24213907	-	LA1207	-	4-hydroxybenzoyl-CoA thioesterase
1208	 33.33	0	1209786..1209899	-	37	24213908	-	LA1208	-	hypothetical protein
1209	 39.51	0	1209905..1211263	+	452	24213909	-	LA1209	-	hypothetical protein
1210	 36.17	0	1211250..1212095	-	281	24213910	-	LA1211	-	hypothetical protein
1211	 38.83	0	1212045..1212608	+	187	24213911	-	LA1210	-	hypothetical protein
1212	 40.99	+1	1212609..1213091	-	160	24213912	-	LA1212	-	universal stress protein UspA-like nucleotide-binding protein
1213	 30.45	0	1213202..1214032	+	276	24213913	-	LA1213	-	hypothetical protein
1214	 37.88	0	1215312..1217114	+	600	24213914	tlpB	LA1214	-	methyl-accepting chemotaxis protein tlpB
1215	 28.57	-1	1217600..1217746	-	48	24213915	-	LA1215	-	hypothetical protein
1216	 25.00	-2	1217825..1217956	+	43	24213916	-	LA1216	-	hypothetical protein
1217	 36.47	0	1218314..1218919	-	201	24213917	-	LA1217	-	GNAT family acetyltransferase
1218	 36.36	0	1219492..1219623	+	43	24213918	-	LA1218	-	hypothetical protein
1219	 36.26	0	1219650..1220504	-	284	24213919	-	LA1219	-	rhomboid family protein
1220	 41.07	+1	1220575..1221531	+	318	24213920	-	LA1220	-	metallo-beta-lactamase superfamily protein
1221	 41.74	+1	1221528..1223966	+	812	24213921	-	LA1221	-	penicillin-binding protein 1A
1222	 43.33	+1	1224054..1225313	+	419	24213922	sucB	LA1222	-	dihydrolipoamide acyltransferase
1223	 45.23	+2	1225327..1226730	+	467	24213923	lpdA1	LA1223	-	dihydrolipoamide dehydrogenase
1224	 39.27	0	1226754..1229516	+	920	24213924	kgd	LA1224	-	alpha-ketoglutarate decarboxylase
1225	 36.23	0	1229711..1229986	+	91	24213925	-	LA1225	-	hypothetical protein
1226	 32.17	0	1230032..1230376	+	114	24213926	-	LA1226	-	hypothetical protein
1227	 27.67	-1	1230485..1230643	-	52	24213927	-	LA1227	-	hypothetical protein
1228	 29.84	-1	1230853..1231425	+	190	24213928	-	LA1228	-	outermembrane protein
1229	 25.85	-1	1231486..1231632	-	48	24213929	-	LA1229	-	hypothetical protein
1230	 39.70	0	1232167..1233282	-	371	24213930	-	LA1230	-	hypothetical protein
1231	 41.17	+1	1233279..1235090	-	603	24213931	htpG1	LA1231	-	heat shock protein htpG
1232	 32.41	0	1235630..1235737	-	35	24213932	-	LA1232	-	hypothetical protein
1233	 36.78	0	1235783..1236856	-	357	24213933	-	LA1233	-	transposase
1234	 38.18	0	1237477..1238694	-	405	24213934	-	LA1234	-	hypothetical protein
1235	 40.06	+1	1238679..1239020	-	113	24213935	-	LA1235	-	hypothetical protein
1236	 32.28	0	1239385..1239573	+	62	24213936	-	LA1236	-	hypothetical protein
1237	 28.79	-1	1240006..1240137	+	43	24213937	-	LA1237	-	hypothetical protein
1238	 40.21	+1	1240864..1241052	-	62	24213938	-	LA1238	-	hypothetical protein
1239	 36.90	0	1241058..1242149	-	363	24213939	carA	LA1239	-	carbamoyl phosphate synthase small subunit
1240	 38.03	0	1242400..1244316	+	638	24213940	thrS	LA1240	-	threonyl-tRNA synthetase
1241	 34.30	0	1244405..1244611	-	68	24213941	-	LA1241	-	hypothetical protein
1242	 38.33	0	1245801..1246340	+	179	24213942	infC	LA1242	-	translation initiation factor IF-3
1243	 37.25	0	1246373..1246576	+	67	24213943	rpmI	LA1243	-	ribosomal protein L35
1244	 39.27	0	1246576..1246929	+	117	24213944	rplT	LA1244	-	50S ribosomal protein L20
1245	 40.53	+1	1247017..1247655	+	212	24213945	-	LA1245	-	transcription elongation
1246	 39.77	0	1247639..1247980	+	113	24213946	-	LA1246	-	hypothetical protein
1247	 36.16	0	1248010..1248540	+	176	24213947	-	LA1247	-	5-formyltetrahydrofolate cyclo-ligase
1248	 27.66	-1	1248632..1248772	+	46	24213948	-	LA1248	-	hypothetical protein
1249	 29.86	-1	1248970..1249113	+	47	24213949	-	LA1249	-	hypothetical protein
1250	 36.70	0	1249110..1249643	+	177	24213950	cheW1	LA1250	-	chemotaxis protein cheW
1251	 38.31	0	1249643..1252855	+	1070	24213951	cheA1	LA1251	-	chemotaxis protein histidine kinase-like kinase
1252	 41.34	+1	1252861..1253934	+	357	24213952	cheB1	LA1252	-	chemotaxis response regulator CheB
1253	 42.42	+1	1253936..1254298	+	120	24213953	cheY	LA1253	-	CheY-like protein
1254	 38.55	0	1254316..1255101	+	261	24213954	-	LA1254	-	hypothetical protein
1255	 39.18	0	1255068..1255631	+	187	24213955	-	LA1255	-	hypothetical protein
1256	 40.65	+1	1255609..1256715	+	368	24213956	aroQ	LA1256	-	P-protein
1257	 36.38	0	1256712..1257629	+	305	24213957	tyrA	LA1257	-	prephenate dehydrogenase
1258	 38.62	0	1257610..1258932	+	440	24213958	aroA	LA1258	-	3-phosphoshikimate 1-carboxyvinyltransferase
1259	 37.30	0	1258859..1259614	+	251	24213959	-	LA1259	-	cytidylate kinase
1260	 37.55	0	1259667..1261349	+	560	24213960	rpsA	LA1260	-	30S ribosomal protein S1
1261	 36.69	0	1261374..1262117	+	247	24213961	-	LA1261	-	hypothetical protein
1262	 40.74	+1	1262114..1262734	+	206	24213962	hisG	LA1262	-	ATP phosphoribosyltransferase catalytic subunit
1263	 37.81	0	1263031..1263231	+	66	24213963	rpmF	LA1263	-	50S ribosomal protein L32
1264	 42.26	+1	1263237..1264244	+	335	24213964	plsX	LA1264	-	putative glycerol-3-phosphate acyltransferase PlsX
1265	 30.56	0	1264692..1264799	+	35	24213965	-	LA1265	-	hypothetical protein
1266	 31.67	0	1265023..1265142	-	39	24213966	-	LA1267	-	hypothetical protein
1267	 32.08	0	1265107..1265265	+	52	24213967	-	LA1266	-	hypothetical protein
1268	 33.33	0	1265271..1265384	+	37	24213968	-	LA1268	-	hypothetical protein
1269	 30.56	0	1265606..1265785	+	59	24213969	-	LA1269	-	hypothetical protein
1270	 33.33	0	1265859..1266029	+	56	24213970	-	LA1270	-	hypothetical protein
1271	 36.71	0	1266082..1266288	+	68	24213971	-	LA1271	-	hypothetical protein
1272	 31.34	0	1266483..1267034	-	183	24213972	-	LA1272	-	transcriptional regulator
1273	 36.33	0	1267951..1268451	-	166	24213973	-	LA1273	-	hypothetical protein
1274	 23.58	-2	1268607..1268729	+	40	24213974	-	LA1274	-	hypothetical protein
1275	 26.50	-1	1268788..1268904	+	38	24213975	-	LA1275	-	hypothetical protein
1276	 33.86	0	1269050..1270963	+	637	24213976	-	LA1276	-	sulfatase
1277	 35.09	0	1271338..1271451	+	37	24213977	-	LA1277	-	hypothetical protein
1278	 30.52	0	1271773..1271985	+	70	24213978	-	LA1278	-	hypothetical protein
1279	 28.99	-1	1272207..1272344	-	45	24213979	-	LA1279	-	hypothetical protein
1280	 35.70	0	1272413..1274401	-	662	24213980	-	LA1280	-	sulfatase family protein
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.