IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.02   STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1118	 41.27	+1	1122189..1122314	+	41	24213818	-	LA1117	-	hypothetical protein
1119	 38.58	0	1122707..1123144	+	145	24213819	-	LA1119	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
1120	 27.93	-1	1123952..1124062	-	36	24213820	-	LA1120	-	hypothetical protein
1121	 36.59	0	1124315..1124836	+	173	24213821	-	LA1121	-	hypothetical protein
1122	 35.49	0	1125009..1126028	-	339	24213822	-	LA1122	-	outermembrane protein
1123	 34.64	0	1126519..1127358	-	279	24213823	-	LA1123	-	hypothetical protein
1124	 34.43	0	1127289..1129019	-	576	24213824	cutE	LA1124	-	apolipoprotein N-acyltransferase
1125	 33.24	0	1129025..1130059	-	344	24213825	-	LA1125	-	outermembrane protein
1126	 36.67	0	1130146..1131165	+	339	24213826	-	LA1126	-	phosphoglycerate dehydrogenase
1127	 32.67	0	1131884..1132033	-	49	24213827	-	LA1127	-	hypothetical protein
1128	 32.12	0	1132502..1133404	-	300	24213828	-	LA1128	-	hypothetical protein
1129	 33.19	0	1133382..1134068	-	228	24213829	-	LA1129	-	DNA alkylation repair enzyme-like protein
1130	 35.21	0	1134242..1135942	-	566	24213830	fadE1	LA1130	-	Acyl-CoA dehydrogenase
1131	 37.99	0	1136113..1136778	-	221	24213831	-	LA1131	-	protein-L-isoaspartate O-methyltransferase
1132	 35.80	0	1136957..1137199	-	80	24213832	-	LA1132	-	hypothetical protein
1133	 33.80	0	1137299..1137730	+	143	24213833	-	LA1133	-	hypothetical protein
1134	 32.70	0	1138125..1138283	-	52	24213834	-	LA1134	-	hypothetical protein
1135	 34.52	0	1139061..1140236	+	391	24213835	-	LA1135	-	hypothetical protein
1136	 36.30	0	1140695..1141468	+	257	24213836	-	LA1136	-	hypothetical protein
1137	 37.63	0	1141490..1142605	+	371	24213837	-	LA1137	-	transcriptional regulator
1138	 39.50	0	1142614..1143927	+	437	24213838	-	LA1138	-	hypothetical protein
1139	 37.45	0	1143918..1144670	+	250	24213839	pgsA1	LA1139	-	phosphatidylglycerophosphate synthase
1140	 39.17	0	1144645..1145655	+	336	24213840	trpD	LA1140	-	anthranilate phosphoribosyltransferase
1141	 38.53	0	1145711..1146037	+	108	24213841	-	LA1141	-	hypothetical protein
1142	 39.42	0	1146815..1148719	+	634	24213842	secD	LA1142	-	preprotein translocase subunit SecD
1143	 36.02	0	1148694..1149662	+	322	24213843	secF	LA1143	-	preprotein translocase subunit SecF
1144	 35.19	0	1149662..1151062	+	466	24213844	ribD1	LA1144	-	riboflavin biosynthesis protein D
1145	 38.19	0	1151032..1151649	+	205	24213845	ribE	LA1145	-	riboflavin synthase subunit alpha
1146	 34.19	0	1151808..1151924	+	38	24213846	-	LA1146	-	hypothetical protein
1147	 40.22	+1	1153293..1154498	+	401	24213847	ribA	LA1147	-	riboflavin biosynthesis protein A
1148	 40.95	+1	1154747..1154851	+	34	24213848	-	LA1148	-	hypothetical protein
1149	 27.78	-1	1154994..1155119	+	41	24213849	-	LA1149	-	hypothetical protein
1150	 26.83	-1	1155103..1155225	+	40	24213850	-	LA1150	-	hypothetical protein
1151	 37.68	0	1155459..1155734	+	91	24213851	-	LA1151	-	hypothetical protein
1152	 37.26	0	1155958..1156644	+	228	24213852	-	LA1152	-	hypothetical protein
1153	 35.07	0	1156856..1157200	-	114	24213853	-	LA1153	-	hypothetical protein
1154	 23.15	-2	1158521..1158628	-	35	24213854	-	LA1154	-	hypothetical protein
1155	 37.60	0	1158629..1159636	+	335	24213855	cysP	LA1155	-	sulfate-binding protein precursor
1156	 37.83	0	1159655..1160500	+	281	24213856	cysT	LA1156	-	Sulfate transport system permease protein cysT
1157	 39.17	0	1160497..1161336	+	279	24213857	cysW	LA1157	-	Sulfate transport system permease protein cysW
1158	 38.91	0	1161512..1162408	+	298	24213858	-	LA1158	-	ABC transporter
1159	 41.03	+1	1162939..1164147	-	402	24213859	-	LA1159	-	outermembrane protein
1160	 44.97	+2	1165353..1165541	+	62	24213860	-	LA1160	-	hypothetical protein
1161	 37.86	0	1165784..1167241	-	485	24213861	fadL	LA1161	-	long-chain fatty acid transport protein
1162	 37.09	0	1167288..1168406	+	372	24213862	-	LA1162	-	hypothetical protein
1163	 33.18	0	1168411..1169076	+	221	24213863	-	LA1163	-	hypothetical protein
1164	 34.03	0	1169086..1174365	+	1759	24213864	-	LA1164	-	serine/threonine-protein kinase
1165	 28.70	-1	1174654..1174761	+	35	24213865	-	LA1165	-	hypothetical protein
1166	 37.98	0	1174787..1175431	+	214	24213866	pdxH	LA1166	-	pyridoxamine 5'-phosphate oxidase
1167	 30.80	0	1175584..1176018	+	144	24213867	-	LA1167	-	hypothetical protein
1168	 32.38	0	1176015..1176434	+	139	24213868	-	LA1168	-	outermembrane protein
1169	 29.55	-1	1176663..1176794	-	43	24213869	-	LA1169	-	hypothetical protein
1170	 31.16	0	1176682..1176819	-	45	24213870	-	LA1170	-	hypothetical protein
1171	 48.81	+2	1177140..1177307	-	55	24213871	-	LA1171	-	hypothetical protein
1172	 36.30	0	1177298..1177702	-	134	24213872	-	LA1172	-	hypothetical protein
1173	 36.76	0	1177835..1179817	+	660	24213873	-	LA1173	-	acetoacetyl-CoA synthetase
1174	 33.74	0	1180324..1181316	+	330	24213874	-	LA1174	-	amino acid ABC transporter, periplasmic amino acid-binding protein
1175	 38.06	0	1181483..1183303	+	606	24213875	mutL	LA1175	-	DNA mismatch repair protein
1176	 39.13	0	1183272..1183892	+	206	24213876	-	LA1176	-	dedA protein
1177	 29.54	-1	1184016..1184384	-	122	24213877	-	LA1177	-	outermembrane protein
1178	 35.09	0	1184588..1184815	+	75	24213878	-	LA1178	-	hypothetical protein
1179	 40.09	+1	1184812..1186083	+	423	24213879	-	LA1179	-	recombination factor protein RarA
1180	 32.70	0	1186084..1186401	-	105	24213880	-	LA1180	-	hypothetical protein
1181	 36.75	0	1187072..1188184	-	370	24213881	hisC	LA1182	-	histidinol-phosphate aminotransferase
1182	 30.16	-1	1188183..1188308	+	41	24213882	-	LA1181	-	hypothetical protein
1183	 33.88	0	1188314..1188496	+	60	24213883	-	LA1183	-	hypothetical protein
1184	 38.48	0	1188498..1190090	-	530	24213884	cyaA6	LA1184	-	adenylate cyclase
1185	 38.89	0	1190272..1191981	+	569	24213885	-	LA1185	-	response regulator receiver domain-containing protein
1186	 38.97	0	1192102..1192491	+	129	24213886	-	LA1186	-	two-component response regulator
1187	 30.23	0	1192788..1192916	+	42	24213887	-	LA1187	-	hypothetical protein
1188	 37.33	0	1193647..1194096	+	149	24213888	-	LA1188	-	outermembrane protein
1189	 32.29	0	1194261..1194548	+	95	24213889	-	LA1189	-	sigma-54 modulation protein
1190	 35.24	0	1194600..1195541	+	313	24213890	-	LA1190	-	hypothetical protein
1191	 38.44	0	1195570..1197645	-	691	24213891	-	LA1191	-	methyl-accepting chemotaxis protein
1192	 37.34	0	1197671..1199242	-	523	24213892	-	LA1192	-	outermembrane protein
1193	 28.81	-1	1199298..1199474	+	58	24213893	-	LA1193	-	hypothetical protein
1194	 26.02	-1	1200017..1200139	+	40	24213894	-	LA1194	-	hypothetical protein
1195	 33.33	0	1200110..1201255	-	381	24213895	-	LA1196	-	hypothetical protein
1196	 32.60	0	1201218..1201628	+	136	24213896	-	LA1195	-	hypothetical protein
1197	 35.70	0	1201594..1202985	+	463	24213897	-	LA1197	-	regulation protein
1198	 39.79	0	1202993..1203766	+	257	24213898	ech4	LA1198	-	enoyl-CoA hydratase
1199	 22.75	-2	1203969..1204157	-	62	24213899	-	LA1199	-	hypothetical protein
1200	 36.69	0	1204195..1204551	+	118	24213900	-	LA1200	-	hypothetical protein
1201	 33.63	0	1204652..1205317	-	221	24213901	-	LA1202	-	hypothetical protein
1202	 33.33	0	1205291..1205410	+	39	24213902	-	LA1201	-	hypothetical protein
1203	 36.56	0	1205434..1206888	+	484	24213903	-	LA1203	-	alginate o-acetyltransferase
1204	 37.78	0	1207021..1207380	+	119	24213904	-	LA1204	-	hypothetical protein
1205	 39.45	0	1207444..1208064	+	206	24213905	rpoE1	LA1205	-	RNA polymerase ECF-type sigma factor
1206	 34.18	0	1208045..1208632	+	195	24213906	-	LA1206	-	hypothetical protein
1207	 40.66	+1	1209323..1209745	+	140	24213907	-	LA1207	-	4-hydroxybenzoyl-CoA thioesterase
1208	 33.33	0	1209786..1209899	-	37	24213908	-	LA1208	-	hypothetical protein
1209	 39.51	0	1209905..1211263	+	452	24213909	-	LA1209	-	hypothetical protein
1210	 36.17	0	1211250..1212095	-	281	24213910	-	LA1211	-	hypothetical protein
1211	 38.83	0	1212045..1212608	+	187	24213911	-	LA1210	-	hypothetical protein
1212	 40.99	+1	1212609..1213091	-	160	24213912	-	LA1212	-	universal stress protein UspA-like nucleotide-binding protein
1213	 30.45	0	1213202..1214032	+	276	24213913	-	LA1213	-	hypothetical protein
1214	 37.88	0	1215312..1217114	+	600	24213914	tlpB	LA1214	-	methyl-accepting chemotaxis protein tlpB
1215	 28.57	-1	1217600..1217746	-	48	24213915	-	LA1215	-	hypothetical protein
1216	 25.00	-2	1217825..1217956	+	43	24213916	-	LA1216	-	hypothetical protein
1217	 36.47	0	1218314..1218919	-	201	24213917	-	LA1217	-	GNAT family acetyltransferase
35.02	MEAN

4.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.